| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,757 | T→A | 10.0% | intergenic (‑74/+234) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,757 | 0 | T | A | 10.0% | 434.1 / 8.5 | 158 | intergenic (‑74/+234) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base T (87/52); new base A (4/13); total (91/67) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.22e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 164 total aligned reads displayed.
GAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGACGCTT > CP009273/2170608‑2170906 | gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTAGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATAGAGATAACGAt > 2:2247411/1‑150 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTT‑TTTTCGATTTAAAAATATTATTAAAATATTTTTTTTTTAATATAGAGATAACCATc > 2:3022389/1‑150 (MQ=255) aaTATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTGAAAATATAAATAAATTATTTGTTTTTTAATATCGAGATAACGCTc > 2:4529536/1‑150 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTAGATTTAAAAATATAATGAAATTATTTGTTTTTAAATATAGAGATAAAGATcac‑a > 2:3508692/1‑150 (MQ=255) tGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑aaa < 2:9820/150‑1 (MQ=255) tGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑GTTTGGATTTTAAAATATAATGAAAATATTTTTTTTTTAATATAGAGATTACGATCAC‑aaa > 1:3378027/1‑150 (MQ=255) aaTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑aaaaa < 2:2921667/150‑1 (MQ=255) aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAAc < 2:3406260/150‑1 (MQ=255) tGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACg < 2:1949857/150‑1 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTGGTTTTCATAAAATAAAGTAAAAATTTTTTTTTTTATATAGTGATAAACAACAC‑AAAAAAGACaa > 1:2102703/1‑150 (MQ=255) aaCCGAATAACCGCCGCGCTGTGCGTTTTTATGATTCTGATTTGTCGATACCACTTAATTTTTCATATCCTGTCTTTTT‑TTTTCTATTTAAAAATATAATTAATTTTTTTTTTTTTAATTATCTTTATAACGATAAA‑AAACACGACAata < 2:1483788/150‑1 (MQ=255) gCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGaa < 2:2365799/150‑1 (MQ=255) cATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTTTTTTTGAAAAAAAAATGAAAATATTTTTTTTTTAAAATATAGATAAAAAAAAC‑ACAAAACACAATAAGaaa > 1:1283678/1‑150 (MQ=255) tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTAGATTTCAAAATATAATGTAATTATTTTTTTTTTAATATAGAGATAACGATCAA‑AAAAAAGACAATATGAAAat > 2:4309910/1‑150 (MQ=255) tAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTAGATTTAAAAATATAATTAAATTATTTTTTTTTAAAAATAGAGATAACCCTAAC‑AAAAACGACAAAATTAAAat > 2:1335857/1‑150 (MQ=255) cgccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTGGATTTAAAAAAAAAATTAAAATATTTTTTTTTTAAAAAATAGGTAACGATAACAAAAAACAACAAAATCAAAattat > 1:4352631/1‑150 (MQ=255) gccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTT‑TTTTAGAATTAAAAAAAAAATGAAAATATTTTTTTTTAAAAATAGAGATAAAAATAAC‑AAAAAACACAAAATTAAAaatatta > 2:1034741/1‑149 (MQ=255) gcgcTGTGCGTTTTTCAGCATCTGCTTTGTCGATACCACTTACATTTTAATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATGAATTTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCgag < 2:2236514/150‑1 (MQ=255) gcgcGGTGGGGTGTTCGGCATGGGGTTGGGCGATACCACGTCCTTTTTCATCGCGTGTCGTTTG‑TTTTCGATTTCAAAATATATTCAAATTTTTTTTTTTTAAATAGCGCGATACCGATCAC‑AAACACGACAATATGAAAATTATTCgag < 2:2806743/150‑1 (MQ=255) cGTTGTTCAGCATGTGCTTTGTCTATACCACGAAATTTTTATTATCCTGTGGTTTT‑TTTTGGTTTTAAAAATATAATTAATTTTTTTTTTTTTAAATATCGATATAACGAACAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑aaa < 1:4183096/150‑1 (MQ=255) tgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTAGTTTTAAAAAAATAAATAAAATAATTTTTTTTTAATATAGATATAAACAAAAC‑AAAAAAAACAAAATTAAAAATATTTGAGGAG‑TT‑TAAGGc > 1:284405/1‑150 (MQ=255) ttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTAGATTTAAAAAAATAATGAAATTATTTTTTTTTTAATATCGAGATAAAGATAAC‑AAAAACGAAAATATTAAAATTATTAGATGAG‑TG‑AAATGCaa > 2:3579749/1‑150 (MQ=255) aacAGAATCTGATTTGCAGACACCACTTACTTTTTCATATCCTGACGTTTT‑TTTTCTATAAAAAAATATAATCAAATTATTTTTTTTTAAATATCTATATAACTATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCaa < 2:115117/148‑1 (MQ=255) aGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTGGATTTGAAAATATAATGAAATTATTTTTTTTTTAATATAGATATAAAGATAAC‑AAAAAAAACAAAAATAAAATTATTTGAGGGG‑TG‑TAAGGGaaaaa > 2:2009255/1‑150 (MQ=255) tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTAAAAATATAATGAAATTATTTTTTTTTAAATATCTAGATAACCATAAC‑AAAAAAGACAAAATTAAAATTATTCGAGGAT‑TG‑AAATGCaaaaaaaag > 2:401805/1‑148 (MQ=255) cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTGGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAAAGATAAC‑AAAAAAGACAATATTAAAATTATTGGTGGAGTTT‑AAGGGCAAAAAAACgcca > 2:2708306/1‑147 (MQ=255) cTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTT‑TTTTAGATTTAAAAAAATAATTAAAATATTTTTTTTTTAATAAAGAGATAAAGATCAC‑AAAAAAGAAAAAATGTAAATTATTATAGGAG‑TG‑TAAGGCaaaaaaaaaggcg > 2:4049904/1‑144 (MQ=255) tgacGATACCACTTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATTAATTTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTccc < 2:2343378/147‑1 (MQ=255) ggacGATCCCCCGTACATTTTCATACCCCGCCGTTTG‑TGTTCGATTACAAAATATAATGAAATTTATTGTTTTTAAATATCGAGATAACGACCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTccc < 2:2947096/147‑1 (MQ=255) aTACCACTTACATTTTAATTTCCTTTCGTTTT‑TTTTCTATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAg < 2:2471845/150‑1 (MQ=255) tACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCTATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATACCGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAgg < 2:3107848/150‑1 (MQ=255) tACCACGTACATTTTCATATCCTGTCGTGTG‑TTTTGGGTTTAAAAAAATAAATAAAATATTTTTTTTTTAATATAGAGATAAACAACAC‑AAAAAACACAAAATTTAAAATATTAGATGAG‑TGTAAATGCAAAAAAAC‑GCCACCCGCTAgg > 2:2419680/1‑150 (MQ=255) aCCACGTACATTTTCATATCCTGTCGTTTT‑TTTTAGATTTAAAAATATAAATAAAATAATTTTTTTTAAATATAGATATAACAATAAC‑AAAAAAAAAAATAATAAAAATATTAGAGGAG‑TG‑AAATGCAAAAAAAATGCCACCCGAAAggg > 2:4771283/1‑150 (MQ=255) cATATCCTTTCGTTTG‑TTTTCTATTACAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAA‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAg < 2:3803089/150‑1 (MQ=255) tCCTGTCTTTTG‑TTTACGATTAAAAAATATAATTAATTTATTTTTTTTTAAATATCTATATAACTACCAA‑AACCACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcg < 1:2300357/150‑1 (MQ=255) tCCTGTCGTTTG‑TTTTCTATTAAAAATTAAAATGAAATTATTTGTTTTTAAATACCGATATAACTAAAAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcg < 1:4698544/150‑1 (MQ=255) tCCTGTCGTGTG‑TTTTAGATTTAAAAAAAAAAAGAAAAAATTTTTTTTTAAATATCGAGATAACCATCAC‑AAAAAACAAAAAAATAAAAATAATAGAGGAG‑GG‑AAAGGCAAAAAAACAGCCACCCCAAAGGGCACCCGTAGCAAAATgcg > 2:533599/1‑150 (MQ=255) tcgtttgtttgtttTTCTATTAAAAATTATATTTAATTTTTTTTTTTTTAAATATCTATAAAAAGAAAAA‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgcg < 1:151132/144‑1 (MQ=255) tGTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCAC‑AAAAAAGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgt > 2:4230851/1‑150 (MQ=255) gTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCgtg > 2:642447/1‑150 (MQ=255) tttg‑tttTCTATTACAAAATATAATTAATTTATTTGTTTTTAAATATCGAGATAACTAACAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt < 1:1897758/150‑1 (MQ=255) tttg‑tttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGATATAACGATCAA‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt < 2:2581817/150‑1 (MQ=255) tttg‑tttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGAGAGGGAAGCCGTAGCAAAGTGCGCGTGtttt > 2:3935929/1‑150 (MQ=255) ttg‑tttTCTATTACAAAATATAATTAATTTTTTTGTTTTTAAATATCGATATAACTATCAA‑AAACACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 1:298368/150‑1 (MQ=255) ttg‑tttTCGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 2:2218558/150‑1 (MQ=255) tttttttCTATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 1:297519/147‑1 (MQ=255) tg‑tttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa > 2:1959418/1‑150 (MQ=255) ttttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACACTATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 2:1008512/1‑150 (MQ=255) tttCGATTTCAAAATATAATGAAATTTTTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACTGCCTCCCGATAGGGATGCCGTAGCACAGTGCGCGTGTTTTTATGc < 1:3569600/150‑1 (MQ=255) ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc > 1:3965806/1‑150 (MQ=255) ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc > 2:309875/1‑150 (MQ=255) tCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCg > 2:3432939/1‑150 (MQ=255) ctttttAAAAATATATTAAATTTTTTTTTTTTTAAATAGGGATATAACGAAAAC‑AAAAACTACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg < 1:1274561/147‑1 (MQ=255) ttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGc > 2:325460/1‑150 (MQ=255) taATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCACAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAAc > 1:2658803/1‑150 (MQ=255) atgattttattTGTTTTTAAATATCTAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt < 1:260696/144‑1 (MQ=255) aTGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt < 2:721334/150‑1 (MQ=255) gAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAc > 2:1055292/1‑150 (MQ=255) aatttattTTTTTTTAAATAGCGATATAACGAACAC‑AACAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACg < 1:3473136/147‑1 (MQ=255) aaaTTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACg > 2:3943892/1‑150 (MQ=255) aaTTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGCAGCCGTAGCACAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGt > 1:1910745/1‑150 (MQ=255) aaTTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGt > 2:245782/1‑150 (MQ=255) tttattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTg < 2:3039115/149‑1 (MQ=255) attattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTg > 1:782722/1‑150 (MQ=255) attattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTg > 1:782615/1‑150 (MQ=255) attattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTg > 1:4467328/1‑150 (MQ=255) attattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTg > 1:4467099/1‑150 (MQ=255) attattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTg < 2:3537137/150‑1 (MQ=255) attattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTg > 1:2304720/1‑150 (MQ=255) attattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTg > 1:90711/1‑150 (MQ=255) tattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGc > 2:2879842/1‑150 (MQ=255) tattTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGc > 2:3357910/1‑150 (MQ=255) tttGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAg > 1:2323229/1‑150 (MQ=255) tttGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAg > 1:4553864/1‑150 (MQ=255) ttGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGt < 2:3077760/150‑1 (MQ=255) tGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTg > 1:1201929/1‑150 (MQ=255) gTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGc > 1:3187076/1‑150 (MQ=255) gTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGc > 1:385333/1‑150 (MQ=255) ttttAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTa > 1:891551/1‑150 (MQ=255) ttttAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTa > 1:3282189/1‑150 (MQ=255) tttAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTAt > 2:1268743/1‑150 (MQ=255) tttAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTAt > 1:4505078/1‑150 (MQ=255) tAATTATCTAGATAACTATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGt < 1:1034741/150‑1 (MQ=255) tAAATATCGATATAACTATCAA‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGt < 1:349829/150‑1 (MQ=255) aaaTATCTATATAACGATAAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTa < 1:82879/150‑1 (MQ=255) aaaTATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTa > 2:3107801/1‑150 (MQ=255) aaTATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAg > 1:227532/1‑150 (MQ=255) atatCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAgg > 2:1258228/1‑150 (MQ=255) atCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGCGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGCTAGGGAAGCCGTAGCCATGTGCGCGTGGGTGTATGCCGGATGCGGTGTTAACATACGTGGCAGTGCTATGTCGGCa > 2:1589818/1‑150 (MQ=255) atCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCa > 1:69320/1‑150 (MQ=255) atCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCa > 2:4132974/1‑150 (MQ=255) ctataTAACTAACAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATg < 1:4529511/146‑1 (MQ=255) cGAGAAACCTATAAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATg < 1:4529281/150‑1 (MQ=255) agaTAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGAt > 1:1572651/1‑150 (MQ=255) gaTAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATa > 1:1014705/1‑150 (MQ=255) aTAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATaa > 1:3716603/1‑150 (MQ=255) aTAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATaa > 1:3716625/1‑150 (MQ=255) aaCGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGa > 1:1748857/1‑150 (MQ=255) gATCAC‑AAAAACGACAATATGAAAATTATTCGAGGCG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGTCGc > 2:682800/1‑150 (MQ=255) gATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGACGc > 1:2165183/1‑150 (MQ=255) | GAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTG‑TTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAG‑TG‑AAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATACGTGGCAGTGCTATGTAGGCATGATAAGACGCTT > CP009273/2170608‑2170906 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |