| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,779,319 | G→T | 9.0% | E234* (GAA→TAA) | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,779,319 | 0 | G | T | 9.0% | 559.6 / 4.7 | 208 | E234* (GAA→TAA) | gpmM | phosphoglycero mutase III, cofactor‑independent |
| Reads supporting (aligned to +/- strand): ref base G (110/66); new base T (4/28); total (114/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.19e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 231 total aligned reads displayed.
TCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTCGCG > CP009273/3779170‑3779468 | tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatgatg < 1:3246752/150‑1 (MQ=255)tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatgatg > 1:2733717/1‑150 (MQ=255)tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatgatg < 2:732754/150‑1 (MQ=255) atTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGaa > 1:4733921/1‑150 (MQ=255) tGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAAtt > 1:396044/1‑150 (MQ=255) ggTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTc < 2:2259544/150‑1 (MQ=255) ggTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTc < 2:1647155/150‑1 (MQ=255) ggTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTc < 2:4660011/150‑1 (MQ=255) actacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTGGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAg > 2:2060496/1‑150 (MQ=255) ctacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGc > 1:365040/1‑150 (MQ=255) cgcgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGAc > 2:2473111/1‑150 (MQ=255) cgcgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGAc < 2:4272301/150‑1 (MQ=255) cgcgATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGAc > 2:4191295/1‑150 (MQ=255) gcgTTGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCTGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGAcc < 2:2234644/150‑1 (MQ=255) tGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTa > 2:304543/1‑150 (MQ=255) ggACCGCGTTAACGTTTGGTTTCGGGTATAAAAAGTTTATGACCTGGTGACTCTGGCGCTGGGCTAGTTCCTGGCCTATACGGCCGTTGGTGTTTTGCTGGGTGCTTTTGCTCGCGAGTAAAATGTTTATTTCGTG‑AAAGCGACCGTTAt < 2:4561003/150‑1 (MQ=255) ggACCGCGATAACCGTTGGGATCGCGTATAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGTTGAATTCGTG‑AAAGCGACCGTTAt < 2:4561321/150‑1 (MQ=255) ccGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCg > 2:2041909/1‑150 (MQ=255) cgcgATAACCGTTGGGATCGCGTAGAAAAAGCTTAGGACCTGCTGACTCTGGCGCTGGGCGAGTTCCTGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAATTGATGAATTCGTG‑AAAGCGACCGTTATCCGt < 2:770557/150‑1 (MQ=255) gcgATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTg > 1:642709/1‑150 (MQ=255) taTAACCGTTGGGATCGCGTATAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAATTGATGAATTCGTT‑AAAGCGACCGTTATCCGTGCt < 2:1060763/149‑1 (MQ=255) aTAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACTAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTg < 2:2610656/150‑1 (MQ=255) tAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGa > 2:1372688/1‑150 (MQ=255) ccGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGGTATCCGTGCTGAAgg > 2:3711857/1‑150 (MQ=255) gATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGGTATCCGTGCTGAAGGTCAGCCa > 2:1096342/1‑150 (MQ=255) aTCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATTCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAg > 1:4540269/1‑150 (MQ=255) aTCGCGGAGAAAAAGAATATGACCTGCTGACTCTGTCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTTCTTATGCTAGCGACCAAAATGAAGAAATAGTG‑AAAGCTACCGTTATACGTGCAGAAAGTCAGcccg > 2:3634569/1‑148 (MQ=255) gcgTATAAAAAGCTTTTGACCTGCTGACTCGGGCGCTGGGCGAGTCCCAGGCCGATACCGCCGTTGCTGTTTTGCTGGCTGATTATGCTCGCTACGAAAATTATTAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcg < 1:1857447/150‑1 (MQ=255) gTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcgcg > 2:2746180/1‑150 (MQ=255) gTAGAAAAAGCTTAGGACCTGCTGACTCTGGCGCTGGGCGTGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCTGGCTGCTTATGCTCGCGACGAAAATGTTTAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcgcg < 1:4753310/150‑1 (MQ=255) tAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATTATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCgg > 1:3801033/1‑150 (MQ=255) aaaaaGCTTATGACGTGCTGACTCGGGCGCTGGGGGTGTTCCAGGCCTATACCGCGGTTGGTGTTTTGCAGGCTGTTTTTGCTCGCGACGAATTTGTTTAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa < 2:3598183/150‑1 (MQ=255) aaaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGTTGCATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa > 2:2000733/1‑150 (MQ=255) aaaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa > 2:4352116/1‑150 (MQ=255) aaaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCaa > 2:1351944/1‑150 (MQ=255) aaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGTGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAAt < 1:74078/150‑1 (MQ=255) aaaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAAt > 2:2595160/1‑150 (MQ=255) aaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAATCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATgg > 1:2944962/1‑150 (MQ=255) aaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATgg > 2:3227711/1‑150 (MQ=255) aGCTTCTGACCTGGTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGTTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGa < 2:1817388/150‑1 (MQ=255) aGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGa > 1:1585073/1‑150 (MQ=255) gCTTTTGACCTGCTGACTGTGGCGCTGGGGGTGTTCCAGGCCTATACCGCGGTTGCTGGTTTGCTGGCTGCTTATGCTCGCGACTAAATTGTTTAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGaa < 2:75120/150‑1 (MQ=255) ttATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGa > 2:3974408/1‑150 (MQ=255) tctGACCTGCTGACTCTGGCGCTGGGCGAGTTCCCGGCCGATCCCGCGGTTGGTGGTTTGCTGGGGGCTTTTGCTGGCGACGAAATTGATGATTTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGAc < 2:2179300/148‑1 (MQ=255) tATGACCTGCTGACTCTGGCGCTGGGCGTGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAATTGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGAc < 2:3692342/150‑1 (MQ=255) tGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATTATGAATTCGTG‑AAATCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCCATGGAAGACgg > 1:3059361/1‑150 (MQ=255) tGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACgg > 1:4308905/1‑150 (MQ=255) aCCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCGTATGCTCGCGACGAAAAAGATGAAATCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCCGACGCGGCAAAGGAAGACGGCg > 1:1199795/1‑150 (MQ=255) ctggtgACTCGGGCGCAGGGCGCGTTCCCGGCCGTTACCGCGGTTGCTGGTTTGCTGGCTGCTTTTGCTCGCGAGAAAATTTATTAATTGGTT‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGAt < 2:96817/150‑1 (MQ=255) ctgctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGAt > 2:1689838/1‑150 (MQ=255) tgcttACTGGGGGGCTGGGCGTGTTCCCGGCCTATCCCGCGTTTGGTGTTTGGCGGGCTGATTTTGCTCGCGACGAATTTTATTAATTCTTT‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATg < 1:1348803/150‑1 (MQ=255) tgctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATg > 1:3831759/1‑150 (MQ=255) ctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCa > 2:4433310/1‑150 (MQ=255) ctctGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGa < 2:3906658/150‑1 (MQ=255) cAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATg > 2:3386749/1‑150 (MQ=255) tgggCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGGTGCTTATGCTCGCGACTAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGa < 1:1124507/149‑1 (MQ=255) gAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTc > 2:2910131/1‑150 (MQ=255) tgTTCCCGGCGGATCCGGCGGTGGGTGGTTTGCGGGCTGATTAGGCTCGCGACTAAATTTATTAATT‑GTGCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc < 1:842382/149‑1 (MQ=255) cgTTCCTGGCCGATACCGCGGTGGGTGTTTTGCAGGCTGCTTTTGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc < 2:3247764/149‑1 (MQ=255) aGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCTGGCTGCTTAGGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc < 2:2714511/150‑1 (MQ=255) aGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGGTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc > 1:115487/1‑150 (MQ=255) ttCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGt > 2:3981401/1‑150 (MQ=255) ccGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGAcc > 2:3165932/1‑150 (MQ=255) ctaaaCCGCCGTTGCTGGTTTGCAGGCTGATTATGCTCGCTACGAAAATTATGAATTCGTT‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcg < 2:869640/146‑1 (MQ=255) cGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATTCTAGCGACGAAAATGATTAATTAGTG‑AAAGCCACCGGTATACGTGCTGAATGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACAGATTTTCATGAACTTCCGTGCTGACcg > 1:2145122/1‑150 (MQ=255) aTACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGTAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcgcg > 2:2357735/1‑150 (MQ=255) tACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTAGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTAATGAACTTCCGTGCTGACcgcgc > 1:4371398/1‑150 (MQ=255) aCCGCGGTTGGTGTTTTGCTGGCTGCTTATGCTCGCGACTAAAATTATTATTTCGTT‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcgcgcg < 1:2997913/150‑1 (MQ=255) aCCGCCGTTGCTGGTTTGCAGGCTGCTTATTCTCGCGACGAAAATTATGAATTAGTG‑AAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCAATGGAATACGGCGATGCACTGATTTTAATGAACTTCCGTGCTGACcgcgcg > 1:3101634/1‑150 (MQ=255) ccgTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTg > 1:961801/1‑150 (MQ=255) cgTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGa > 2:3539457/1‑150 (MQ=255) gTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGaa > 2:112832/1‑150 (MQ=255) gTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGaa > 2:3497640/1‑150 (MQ=255) gTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGaa > 2:1448581/1‑150 (MQ=255) ttGCGGGTTTGCAGGCTGATTATGCTCGCGACGAAAATGTTTAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGaaa < 2:1317710/150‑1 (MQ=255) cTGTTTTGCTGGCTGCTTATGCTCGCGACTAAAATGATTAATTCGTT‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCa < 1:2595023/150‑1 (MQ=255) ggTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACt > 2:944579/1‑150 (MQ=255) aGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCtt > 2:2430326/1‑150 (MQ=255) gctgctTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTc > 2:3837916/1‑150 (MQ=255) gattATGCTCGCGATGAATATTATTATGGCGTG‑AAAGCGTCCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTg < 1:4759997/148‑1 (MQ=255) ctTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGa > 2:2559790/1‑150 (MQ=255) ttATGCTCGCTACTAAATTGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGaa < 1:3711857/150‑1 (MQ=255) ttATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGaa > 2:46245/1‑150 (MQ=255) tATGCTCGCGACTAAATTGTTTAATTCGTT‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAAc < 1:3451026/150‑1 (MQ=255) tATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAAc > 1:602162/1‑150 (MQ=255) aTGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACg < 2:1495802/150‑1 (MQ=255) gCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCt < 2:4120052/150‑1 (MQ=255) cTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTg > 2:1815281/1‑150 (MQ=255) tCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGa > 1:2886215/1‑150 (MQ=255) aaaaTGATTAATTCGTT‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg < 1:4191295/150‑1 (MQ=255) aaTGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGc > 1:4107393/1‑150 (MQ=255) atgatgAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCt < 2:2169526/150‑1 (MQ=255) atgatgAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCt > 2:2775759/1‑150 (MQ=255) gatgaATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTc < 1:1048106/150‑1 (MQ=255) atgaATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcg > 1:3037740/1‑150 (MQ=255) atgaATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcg > 1:1887464/1‑150 (MQ=255) atgaATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcg > 1:1762007/1‑150 (MQ=255) atgaATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcg > 1:1598355/1‑150 (MQ=255) gaATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcgcg > 2:474215/1‑150 (MQ=255) gaATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTcgcg > 1:3871146/1‑150 (MQ=255) | TCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTG‑AAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCTTCGCG > CP009273/3779170‑3779468 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |