| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,870,977 | T→A | 5.5% | intergenic (‑152/+88) | yidB ← / ← gyrB | DUF937 family protein/DNA gyrase, subunit B |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,870,977 | 0 | T | A | 5.5% | 936.2 / 4.5 | 313 | intergenic (‑152/+88) | yidB/gyrB | DUF937 family protein/DNA gyrase, subunit B |
| Reads supporting (aligned to +/- strand): ref base T (188/102); new base A (8/15); total (196/117) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.32e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 316 total aligned reads displayed.
TAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAA > CP009273/3870828‑3871126 | tAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCt < 1:4118620/150‑1 (MQ=255) aaTCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATATAGTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGAGAACGCCTTATCCGGCCTa > 1:3568872/1‑150 (MQ=255) aaTCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTa > 2:3533831/1‑150 (MQ=255) tCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGAACTCCGCCCATTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACa < 1:158436/150‑1 (MQ=255) aCCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaa < 1:1293509/150‑1 (MQ=255) ccTGTACAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACaaaa < 2:848080/150‑1 (MQ=255) cTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATTATAATTGCGGACTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCACTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAt < 1:4453290/150‑1 (MQ=255) tGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATc > 2:3526296/1‑150 (MQ=255) aCGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCa < 2:2121524/150‑1 (MQ=255) cGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCaa < 1:2780265/150‑1 (MQ=255) gtgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATTCGGCGTGAAAGCCTTATCCGGCCTACAAAATCATGAAAAATCAAt > 1:2303880/1‑150 (MQ=255) gtgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAAt > 1:2389017/1‑150 (MQ=255) tgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATa > 2:2090960/1‑150 (MQ=255) tgtTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTGTCTTCTAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAACTTCAATa > 2:2678053/1‑150 (MQ=255) ttGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACa < 1:102013/150‑1 (MQ=255) ttGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACa < 1:4580007/150‑1 (MQ=255) tGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACAt < 1:501829/150‑1 (MQ=255) cAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCaa > 2:1143273/1‑150 (MQ=255) aaaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATAATGAAAATTCAATACATTGCAAg > 1:113653/1‑150 (MQ=255) aaaaGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGa < 2:3010198/150‑1 (MQ=255) gTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGAtttt < 1:1874968/150‑1 (MQ=255) aGATTTGCGGGATGCTAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTGGCTGATAGCTTCGTGCCGGATGCGGCGTGCACGCCTTCTCCGGCCTCCACAATCCTGACAAGTCAATACATTGCCAGATTGTCGtt > 2:4042842/1‑149 (MQ=255) aGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTa < 1:1664255/150‑1 (MQ=255) aGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTa > 2:1690475/1‑150 (MQ=255) aGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTa < 1:3038236/150‑1 (MQ=255) aGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTa > 2:1992899/1‑150 (MQ=255) aGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATAATGAAAATTAAATACATTGCAAGATTTTAGTa > 1:1221727/1‑150 (MQ=255) aGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATACGGCCTACAAAATAATGAAAATTCAATAAATTGAAATATTTTCGTa > 1:3634928/1‑150 (MQ=38) tGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCt < 2:613541/150‑1 (MQ=255) gCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTg < 2:4281976/150‑1 (MQ=255) cGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGa < 2:3569074/150‑1 (MQ=255) gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGAt < 2:545782/150‑1 (MQ=255) gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGAt < 2:2560052/150‑1 (MQ=255) gggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGAt < 2:2559986/150‑1 (MQ=255) ggATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGTACGCCTTATCCGGCCTACAAAATAATGAAAATTCAATAAAATGCAAGATTTTCGTAGGCCTGATa > 1:3249657/1‑150 (MQ=255) gatgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa > 2:3297610/1‑150 (MQ=255) gatgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATaa < 1:1374167/150‑1 (MQ=255) ctgatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGCTGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGCTTTTCGTAGGCCTGATGAg > 2:3153449/2‑150 (MQ=255) gatAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCg > 2:1508148/1‑150 (MQ=255) tAATTGCGGATTGCAGAAATAAAATGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTa > 2:3889913/1‑150 (MQ=255) aaTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAg > 2:3336940/1‑150 (MQ=255) aaTTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAg > 2:1216032/1‑150 (MQ=255) gCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCa < 1:791526/150‑1 (MQ=255) cGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCAt > 2:1082890/1‑150 (MQ=255) ggATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATc > 1:3964874/1‑150 (MQ=255) aTTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTGAATACATTGCAAGATTTTCGTTGTCCTGGTAAGAGTGGCGCTTcgg > 1:471323/1‑148 (MQ=37) aGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGACAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACg > 1:3496847/1‑150 (MQ=255) aaTAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTAAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTc > 1:1033612/1‑150 (MQ=255) aTAAAACGGGCGGAGCTGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATCCATTGCAAGATTTTCGTAGGCCTGATAAGCGTCGCGCATCAGGCACGCTCg < 2:4530702/150‑1 (MQ=255) aaaaaGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCa > 2:2159162/1‑150 (MQ=255) aaacGGGCGGTGTTTATCTCCGCCCTTTTCTTATCGCTTCTTGCGGGAGGCGGCGTGAACGCGTTCGCCGGCCTACAAAATCATGACATTTCAATACTTTGCAAGATTTTCGTTGGCCTGATACGGGTAGCGCATCCGGCACGCTCGCAt < 2:3683036/150‑1 (MQ=255) gCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTTAACGCCTTACCCGGCATACAAAATCATCAAAATACAATACATTGCAAGATTTTCGTAGGCCTTATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAg < 2:2466021/150‑1 (MQ=25) cGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAACTCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgc > 2:236600/1‑150 (MQ=255) ggATATGAACTCCGCCATTTTATTTTAGATTCTTGCCGGATGCGGCGTTACCGCCTTATCCGGCAAACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTTATAAGCGTAGCGAATCAGGCACGCTCGCATGGTTAgcg < 1:393676/150‑1 (MQ=255) ggAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgcg > 1:2228771/1‑150 (MQ=255) ggAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAAAGCCTTATCCGGCCTACAAAATCATGAAAATTAAATACATTTCAATATTTTAGTATGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgcg > 1:2188510/1‑150 (MQ=25) gagaTGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgcgc > 2:1558827/1‑150 (MQ=255) gagaTGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAgcgc > 2:4448107/1‑150 (MQ=255) tgatgatCTCCGCCCTTTTCTTATAGCTTCTTGCCGGTTGCGGCGTGAACGCCTTATCCGGCCAACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTTGGCCTGTTATGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGcc < 1:760472/149‑1 (MQ=25) agaTGATCTCCGCCCTTTTCTTATCGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGcc < 2:4757760/150‑1 (MQ=255) agaTGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGcc > 1:2273551/1‑150 (MQ=255) agaTGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTAAAAAATCATGAAAATTCAAAACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGcc > 1:989287/1‑150 (MQ=255) agaTGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCATATACGGCCAAAAAAATAATGAAAAATCAATACAATTCAAGATTTTAGTAGGCCTGATAAGCGTATCGCATCAGGCACGCTCGCAAGGTTAGCGcc > 1:3385539/1‑150 (MQ=25) atgatCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTAACCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAATCCTAGCGCATCAGGCCCGCACGCAAGGATAGCGCCAt > 1:3181539/1‑150 (MQ=21) tctcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTaaa < 2:760858/150‑1 (MQ=255) tctcCGCCCTTTTCTTATAGCTTCTTGCCGGAGGCGGCGTGAACGCCTTATCCGGCCTACAACATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTaaa < 2:1474939/150‑1 (MQ=255) ctcCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCATATACGGCCAACAAAATAAAGAAAATTAAAAACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACCCTCGCATGGTTAGCGCCCATAAat > 1:4005225/1‑150 (MQ=25) cccTTTTCTTATAGCTTCTTGCCGGCTGCGGCTTGAACGCCTTATCCGGCATAAAAAATCATTAAAATTAAATACATTGAAATATTTTCTTAGGCATTATAAGCGTAGCGCATCTGGCACGCTCGCATGGTTAGCGCCATTAAATATCGa < 1:1930008/150‑1 (MQ=255) ccTTTTCTTATAGCTTCTTGCCGGATGCGGCGGGAACCCCATATACCGCCAACAAAATAATTAAAAATAAAAACAATGCAAGATTTTAGTATGCCTGATAAACGTAGCGCAACAGGCACGCTCGCCTGGTTAGCGCCCGTAAATATCGat > 1:827724/1‑150 (MQ=255) ttttCTTATAGCTTCTTGCCGGATTCGGCGTGAACGCCTTATCCTGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTTGGCCTGATAAGCGTAGCGCAGCAGGCACGCTCGCATGGTTAGCGCCATTAAAAATCGatat > 2:2039835/1‑150 (MQ=37) tttCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCAACAAAATCATGAAAATTAAATACAATGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCACGCACGCGCGCATGGTTAGCGCCATTAAATATCGATAtt > 1:140741/1‑150 (MQ=25) ataGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGTCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTcgccgc > 1:299838/1‑150 (MQ=255) ataGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCCTGGTTAGCGCCATTAAATATCGATATTcgccgc > 1:299185/1‑150 (MQ=255) taGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCt > 2:4440959/1‑150 (MQ=255) cttGCGGGATGCGGCTTGAACGCCTTATCCGGCCTAAAAAAACATTAAAATTCAATAATTTGAATGTTTTTCGTTGGCCTGATATGCGTAGCGAATAAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAgg < 1:386205/150‑1 (MQ=255) cttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAgg > 2:3232297/1‑150 (MQ=255) cttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAgg > 1:3720292/1‑150 (MQ=255) ttGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAggg > 2:2302499/1‑150 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGc > 2:2906610/1‑150 (MQ=255) tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGc > 2:721782/1‑150 (MQ=255) tGCCCGATGCGGCGTGAACGCCTTATCAGGCCTACAAAATCATGAAAATTCAATACATTGCAATATTTTCGTAGGCCAGATAAGCGTAGCGCATCAGGCACCCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGc > 2:2478416/1‑150 (MQ=25) cctgaggcggctTCAACGCATTAGCCGCCAAAAAAAATCATTAAAATTCAAAAAATTGAATTTTTTTCTTAGGCCTTATAAGCGTAGCGAATCTGCCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGt < 1:2549531/144‑1 (MQ=255) ccGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCTTGAAAATTCAATACATTGCAATATTTTCGTAGGCCTTATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGt < 1:3533627/150‑1 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtc > 2:3459150/1‑150 (MQ=255) ggATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTtc > 2:373580/1‑150 (MQ=255) tGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTctct < 2:303264/150‑1 (MQ=255) cggcgTTAACGCCTTAGCCGGCAAAAAAAATAATGAAAATTCAATACATTGAAATATTTTCTTTGGCCTTATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTc < 1:1835243/150‑1 (MQ=37) ggcgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTCAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTGCa > 1:4631207/1‑150 (MQ=255) cgTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAAt > 1:2061643/1‑150 (MQ=255) tGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATaa > 2:3398802/1‑150 (MQ=255) tGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATaa > 2:1911138/1‑150 (MQ=255) tGAACGCATTATCCGGCATACAAAATCATGAAAATTCAATACATTGCACGTTTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATaa < 2:1252317/150‑1 (MQ=255) aCGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACg < 2:369544/150‑1 (MQ=255) cTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACg > 2:3170876/1‑150 (MQ=255) tATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGgc > 2:1334402/1‑150 (MQ=255) tCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATATTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCAGGGTTAGCGCCATTAACTATCGATATTCGCCGCTTTCAGGGCGTTCGCTTCAATAACCGCACGgcgc > 2:3777320/1‑150 (MQ=37) ccGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGcgcg > 1:3308840/1‑150 (MQ=255) ccGGCATACAAAATCATGAAAATTCAATACATTGAAATATTTTCGTAGGCCTTATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGcgcg < 2:2206958/150‑1 (MQ=255) ccTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTc > 1:3840692/1‑150 (MQ=255) cTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCa > 2:447493/1‑150 (MQ=255) | TAATCACCTGTAAAGCGTTACGTGTTGACCCAAAAAGTATAGATTTGCGGGATGATAATTGCGGATTGCAGAAATAAAAAGGGCGGAGATGATCTCCGCCCTTTTCTTATAGCTTCTTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAATCATGAAAATTCAATACATTGCAAGATTTTCGTAGGCCTGATAAGCGTAGCGCATCAGGCACGCTCGCATGGTTAGCGCCATTAAATATCGATATTCGCCGCTTTCAGGGCGTTCTCTTCAATAAACGCACGGCGCGGTTCAA > CP009273/3870828‑3871126 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |