| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 360,173 | C→A | 7.6% | intergenic (‑107/+488) | lacZ ← / ← lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 360,173 | 0 | C | A | 7.6% | 808.4 / 5.9 | 303 | intergenic (‑107/+488) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| Reads supporting (aligned to +/- strand): ref base C (71/193); new base A (13/26); total (84/219) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.44e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 313 total aligned reads displayed.
CAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAT > CP009273/360025‑360322 | cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc < 2:1477563/150‑1 (MQ=255)cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc > 2:2302672/1‑150 (MQ=255)cAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATcc < 2:504651/150‑1 (MQ=255) tgCGGCTTACCATCCCGCGCAACCATCCTGTGCTGGCGCTCCGATTATACGGTGTCAAACTTGTTATTTCCGATCCCAATTTCCTGGATTTTTTGGGCGGGGGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCg < 1:2191665/149‑1 (MQ=16) aGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATCCg > 2:4009583/1‑150 (MQ=255) cggataaccaccCCGCCCCACCATCCCGTGCTGGAGCTCCTTTTATACGCTTACAAACATGAGAATTCCGATCCCAATTTCCTGGCTGTTTTGGGGGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCt < 1:1017592/144‑1 (MQ=16) cGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGCAACGTTAAAAAACGCt > 1:1366841/1‑150 (MQ=255) cTTACCATCCCGCGCCACCATCCAGTGCAGGAGCTCCTATTATATGGTGTAAACCAGGACAATTCCGATCCCCAATTCCTGGCTGTTTTTGGCGGGCGCCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTccc < 1:4136734/150‑1 (MQ=21) cTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTccc < 2:1884180/150‑1 (MQ=255) cTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCTTCGCCACGGTCAAAAACGCGccc > 1:2923325/1‑150 (MQ=37) ttACCATCCCGCGCCACCATCCCGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcg < 1:1150123/150‑1 (MQ=255) ttACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCCACGTTCAAATCCGCTCCcg > 1:3523605/1‑150 (MQ=255) ttACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcg < 2:1784126/150‑1 (MQ=255) acaaacaccagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcg > 2:1401996‑M1/73‑150 (MQ=255) acaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTAAAAACCGCTCCcg < 1:381131‑M1/78‑1 (MQ=255) aaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggc < 1:3934100‑M1/80‑1 (MQ=255) ccATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCcggcg > 2:3689504/1‑150 (MQ=255) cATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGGTTCGCAACGTTCAAATACGCAGCccgcgg > 1:889113/1‑150 (MQ=37) acaacagataaaacgaaaggcccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACCTTCAAATACGCTCCcggcgg < 1:397113‑M1/82‑1 (MQ=255) tCCCGCGCCACCATCCCGGGCTGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCGGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGAt < 2:2028457/150‑1 (MQ=25) cgcCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTc < 2:2170952/150‑1 (MQ=255) gcaaccaTCCAGTGCTGGAGCTCCTTTGATAAGCTTAAAAACATGATAATTCCGATCCACAATTCCTGGCTTTTTAGGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTcc < 1:322433/147‑1 (MQ=18) caccaTCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa > 2:3945301/1‑150 (MQ=255) gaaaggcccagtctttcgactgtgcctttcgttttttttgaggcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGGTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCa > 2:3144611‑M1/55‑150 (MQ=255) ccAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAgg < 2:4635622/150‑1 (MQ=255) aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgag < 2:2934346/150‑1 (MQ=255) aGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgag < 2:546274/150‑1 (MQ=255) gTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATGCCGATCCCCAATTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGgaga < 2:4408496/150‑1 (MQ=255) cccagtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGagag < 2:4697391‑M1/102‑1 (MQ=255) tgtccgtcgacggagcctttcgttttatttgctgcccggggcaatAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGt > 2:4380229‑M1/46‑150 (MQ=255) agtctttcgactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAAAGTTAAAATACCCACCCCGCGGATTTGTACTACTAAGGAGagccg < 2:1213657‑M1/105‑3 (MQ=255) ggcggtcgcctgagccgttcgatttatttgcttgcgggggacttCATTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGtt > 2:3000465‑M1/45‑150 (MQ=255) gAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTc < 2:3922301/150‑1 (MQ=255) gAGCTCCGATGAGAAGCTGTCAAACATGAGAATTCCGACCCCCACTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTc < 2:3739667/150‑1 (MQ=255) ccGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGa < 2:2729873/150‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGac < 2:403784‑M1/113‑1 (MQ=255) gactgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAACCGCTCCCCGCGGAATTGTCCAACTCAGGAGAGCGGTCACCGac < 2:2441445‑M1/113‑1 (MQ=255) gatgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGaca < 1:1113639/150‑1 (MQ=255) atgatAATCTGTCAAAAATGAGAATTCCTATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaa < 2:4470655/150‑1 (MQ=255) tgatAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaa < 2:3309842/150‑1 (MQ=255) tgagcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAAACTTCAAATACGCACCCCGCGGATTTGTCCTACACACGAGAGcgttcaccaaaaaa < 2:475382‑M1/116‑7 (MQ=255) gcctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGacaaacaa < 2:3554466‑M1/119‑1 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAACGTTCAAATACGCTCCCCGCGGATTTTTCCAACAAAGGGGAGCGTTCACCCCCAAacaaca < 1:4666575‑M1/121‑1 (MQ=255) ctttcgttttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTAGCAACGTTCAAATCCCCTCCCGGCGGATTTGTCCAACACAGGAGAGCGTTCACCGACAAaccaca < 2:69668‑M1/121‑1 (MQ=255) tttcgttttatttgatgcctggggaattAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAg > 1:4372808‑M1/29‑150 (MQ=255) gCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAg < 2:2510245/150‑1 (MQ=255) tGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGAt < 1:3586796/150‑1 (MQ=255) ggttttttttgatgcctggggatttATTTCCTGGCTGTTTAGGGGGGGCGTCGTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa > 2:1636401‑M1/26‑150 (MQ=255) gTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATa < 1:1991219/150‑1 (MQ=255) tttatttgatgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa < 2:3544033‑M1/128‑1 (MQ=255) aaaCATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa < 2:341695/150‑1 (MQ=255) aaaTGAGAATTCCGATCCCCATTTCCTGGCTGTTTTGGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACg < 2:3625047/148‑1 (MQ=14) cATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTGGCGTCGCAACGTTCAAAACCGCTCCCCGCGGAATTGTCCGACTCAGGAGAGCGGTCCCCCACCCACAACCGATAAAAccc > 2:421248/1‑148 (MQ=17) atttgatgcctgggtaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCAc > 1:4254919‑M1/20‑128 (MQ=255) agaATTCCGATCCCCAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg < 1:4331309/150‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg < 1:1928470/150‑1 (MQ=255) agaATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAgg < 2:2254259/150‑1 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGcc > 1:3175801‑M1/14‑150 (MQ=255) tgcctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAAACCCCTCCCCGCGGAGTTGTCCTACACAGGAGAGCGGTAACCCACAAACAACAAATAAAACGAAAGGcc < 1:749751‑M1/137‑1 (MQ=255) tttCCGATCCCCATTTCCGTGCTGTTTTGGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc < 1:1748445/149‑1 (MQ=11) agtCCGATCCCCAATTCCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGccc < 1:1973461/148‑1 (MQ=255) aTTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAAACGCTACCGGCGGCTTTTTCCTACGAAGGAGAGCGTTGACCCACAAAAAAAAGATAAAAAGAAAGGgcc > 1:4770574/1‑150 (MQ=14) cctgggtaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATaaaa > 1:2335457‑M1/12‑139 (MQ=255) cctggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGCAACGTTCAAATCCGCTCCCGGCGGATTTGTACTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCa < 2:3365854‑M1/139‑1 (MQ=255) tggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGt < 2:2648218‑M1/141‑1 (MQ=255) ggggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTACGCAGGTGAGCGTTCACCGACACACAACAGATAAAACGAAAGGCCCCGTc < 2:4481179‑M1/142‑1 (MQ=255) cGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTc < 2:1809671/150‑1 (MQ=39) gggaattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACGCTCCCCGCGGCTTTGTCCTCCGCAGGGGCGCGGTCCCCGGCAAACGACAGATTAAACGTAAGGGCCagtaa < 2:1297792‑M1/143‑3 (MQ=255) gATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCt < 2:1069449/150‑1 (MQ=38) aTCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAAACCGCACCCGGCGGATTTGTCCTACGCCGGAGAGCCGTCACCCCCCAACAACAGAAAAAACCAAACGCCCACTcgg > 1:3144611/1‑148 (MQ=11) ccccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 1:662539/150‑1 (MQ=35) ccccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 2:1156642/150‑1 (MQ=35) aattAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATACGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTc < 2:1052443‑M1/146‑1 (MQ=255) cccAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTTCTTCGCAACGTTCAAAACCCCTCCCGGCGGCTTTGTCCTACACAGGAGAGCGGTCACCGCCACAAAACACATAAAAAGAAATGCCCACTCTTTCg > 1:2685095/1‑150 (MQ=11) ccAAGTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGa < 2:895076/150‑1 (MQ=17) cAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGAc < 2:655548/150‑1 (MQ=33) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACt < 2:3194550/150‑1 (MQ=32) aaTTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTAACCGACAAACAACAGATAAAACGAAATGCCCACTCTTTCGACt > 2:2078956/1‑150 (MQ=255) aTTCCTGGCAGTTTATGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTg < 1:3049190/150‑1 (MQ=17) cgccccgcccgcccCCCTCCGGGCCGTTGCTTCGCAACGTTCAACTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAACCAACAGATAAACCGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGc < 1:1621746/144‑1 (MQ=1) tGCCCGCCACCCTCCGGGCCGTTGCTTCGCCACGTTCAAATCCGCTCCCGGCGGCTTTGTGCTACTCAGGAGGGCGTTAAACGACAAACAACAGATAAAAAGAAAGGCCCAGTCTTTCGACGGGGCCGTTGGGTTTATTTGTTGCCTggg > 2:2864862/1‑150 (MQ=11) tGCCCGCCACCCTCCGGGCCGGTGCTTCGCAACGTTCAAAGCCGCTCCCGGCGGATTTGTCCTACTCCGGAGAGCGGTCACCGACAAACACCAGATAACACGAAAGGCCCCGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 2:1129548/150‑1 (MQ=11) ggCCCGCCACCCTCCGGGCCGGTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTggg < 1:2982170/149‑1 (MQ=11) gccccGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTC‑TTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg < 1:3262759/148‑1 (MQ=14) gCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTgggg < 2:1549759/150‑1 (MQ=31) cGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGgggaat < 1:459487/150‑1 (MQ=33) aCCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGCCAAACAACAGATAAAACGAAAGGCCCCGTCTTTCGCCTGAGCCTTTCGTTTTATTTGATGCCTGgggacttggg > 2:3853336/1‑150 (MQ=255) cTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAAAGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCGGgggaattgggaat > 2:1528505/1‑150 (MQ=255) ccGGGCCGTTGCTTCGAAACGTTAAAATCAGCTCCCGGCGGATTTGTCCTACTCAGTAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGaatta < 1:403728/150‑1 (MQ=255) ccGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTGTCGTTTGATTTGATGCCTGGGGAAGTGGGAATTAATTCt > 1:2028464/1‑150 (MQ=255) ttGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGACTTGGGAATTAATTCTTGa > 2:1931769/1‑150 (MQ=255) aaCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTCTTTGATGCCGGGGGACTTGGGACTGAATTCTTGAAGACGAAAg > 1:535322/1‑150 (MQ=14) aCGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAgg > 2:4321362/1‑150 (MQ=255) tCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCt < 2:2365883/150‑1 (MQ=255) tCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCt > 1:3271633/1‑150 (MQ=255) caTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGt < 1:1913330/149‑1 (MQ=255) aTCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTAGTTGATGCCTGGGGAAGTGGGACTTAATTCTTGAAGACGAAAGGGCCTCGTg > 2:972383/1‑150 (MQ=255) ccGCTCCCGGGGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAAAAACATATAAAACTAAAGGCCCTGTCTTTCGACTGAGCCTTTCGTTTTTTTTGATGCCTGGGGAATTGGGATTTAATTCTTGAAGACGAAAGGGCCTCGTGAt < 1:2441445/150‑1 (MQ=18) ccGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGGCTGGGGCATTGGGAATTAATTCTTGAAGACGAAAGGGCCGCGTGAt > 1:2809959/1‑150 (MQ=255) ccGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAt > 2:4553765/1‑150 (MQ=255) | CAGCGGCTTACCATCCAGCGCCACCATCCAGTGCAGGAGCTCCGATGATAAGCTGTCAAACATGAGAATTCCGATCCCCAATTCCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGCAACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCAGGAGAGCGTTCACCGACAAACAACAGATAAAACGAAAGGCCCAGTCTTTCGACTGAGCCTTTCGTTTTATTTGATGCCTGGGGAATTGGGAATTAATTCTTGAAGACGAAAGGGCCTCGTGAT > CP009273/360025‑360322 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |