mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 3180785 | NA (NA) | 7 (0.030) | 6/278 | NT | 2.0% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | = 3750596 | 340 (1.230) | coding (592/1152 nt) | yiaY | putative Fe‑containing alcohol dehydrogenase, Pfam00465 family | |||||
| * | ? | CP009273 | 3179457 = | NA (NA) | 4 (0.010) | 3/274 | NT | 1.2% | intergenic (+9/‑89) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | 3750590 = | 346 (1.250) | coding (598/1152 nt) | yiaY | putative Fe‑containing alcohol dehydrogenase, Pfam00465 family | |||||
| * | ? | CP009273 | = 3076055 | 382 (1.380) | 4 (0.020) | 4/254 | NT | 1.1% | noncoding (7/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 3076169 = | 359 (1.420) | noncoding (121/147 nt) | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP214 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | = 2310161 | 265 (0.960) | 11 (0.040) | 8/278 | NT | 4.0% | coding (506/651 nt) | rcsB | response regulator in two‑component regulatory system with RcsC and YojN |
| ? | CP009273 | = 2991050 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||
| * | ? | CP009273 | 2282398 = | NA (NA) | 4 (0.010) | 4/276 | NT | 2.1% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | CP009273 | 3795902 = | 179 (0.670) | coding (517/1020 nt) | waaR | UDP‑D‑galactose:(glucosyl)lipopolysaccharide‑ alpha‑1,3‑D‑galactosyltransferase | |||||
| * | ? | CP009273 | = 776678 | 197 (0.710) | 4 (0.020) | 4/242 | NT | 2.2% | noncoding (76/76 nt) | lysY | tRNA‑Lys |
| ? | CP009273 | 777000 = | 189 (0.790) | intergenic (+100/‑33) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys | |||||
| * | ? | CP009273 | 308665 = | 176 (0.640) | 9 (0.030) | 4/278 | NT | 4.9% | intergenic (‑177/+187) | ykgM/ykgR | 50S ribosomal protein L31 type B; alternative L31 utilized during zinc limitation/uncharacterized protein |
| ? | CP009273 | = 1463497 | NA (NA) | noncoding (1/1331 nt) | IS2 | repeat region | |||||