| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 295,695 | T→G | 17.0% | E317D (GAA→GAC) | paoC ← | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 295,695 | 0 | T | G | 17.0% | 619.2 / 53.3 | 289 | E317D (GAA→GAC) | paoC | PaoABC aldehyde oxidoreductase, Moco‑containing subunit |
| Reads supporting (aligned to +/- strand): ref base T (71/162); new base G (54/2); total (125/164) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.31e-21 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 301 total aligned reads displayed.
CGTCGATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATC > CP009273/295547‑295842 | cgtcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGtt < 2:2933971/149‑1 (MQ=255)cgtcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGtt < 1:3647734/149‑1 (MQ=255) gtcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGttt > 1:4181575/1‑149 (MQ=255) gtcgATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATAAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGttt > 1:3857873/1‑149 (MQ=255) aTCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCgg > 1:3965049/1‑149 (MQ=255) gcgATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTGCGGCGt > 1:2651852/1‑149 (MQ=255) gATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTgc < 1:1034277/149‑1 (MQ=255) aTTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTgcc < 1:3861071/149‑1 (MQ=255) aTTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTgcc > 2:2116140/1‑149 (MQ=255) ttCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTgccgc < 2:101284/149‑1 (MQ=255) gAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCgg < 1:4381893/149‑1 (MQ=255) ccATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAgg < 1:436060/149‑1 (MQ=255) aTCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGtt < 2:2570071/149‑1 (MQ=255) tCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGttt > 2:2846339/1‑149 (MQ=255) tCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACGGCGTGGCGCCGGGCAGGttt > 1:1877060/1‑149 (MQ=255) cAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTc < 2:4219736/149‑1 (MQ=255) cAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTc < 1:3416865/149‑1 (MQ=255) aGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTGCGGCGTGCCGCCCGGCAGGTTTcc > 1:2587131/1‑149 (MQ=255) aGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTcc < 2:2442606/149‑1 (MQ=255) aGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCCGCGGGGCCCCGGGCCggggtgc > 1:1625010/1‑144 (MQ=255) aGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGGGCCCCCCGGCCGGgttac > 1:2237250/1‑147 (MQ=255) ccGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGa < 2:269051/149‑1 (MQ=255) ccGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGa < 2:626259/149‑1 (MQ=255) ccGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGa < 2:3741656/149‑1 (MQ=255) ccGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGa < 2:2366368/149‑1 (MQ=255) gggtgCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGAcc < 1:182557/149‑1 (MQ=255) gCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACGGCGTGCCGCCGGGCCGGGTTCCAGACCACCt > 2:3385896/1‑149 (MQ=255) cTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCtt < 2:2794749/149‑1 (MQ=255) ccGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCAtg < 1:2513921/149‑1 (MQ=255) cGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCAtgt < 1:179828/149‑1 (MQ=255) gggCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCCGGGTTGCAGACCAGCGTTCAtgtg > 2:151117/1‑149 (MQ=255) gggCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCAtgtg < 1:198270/149‑1 (MQ=255) gggCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCAtgtg < 1:2489825/149‑1 (MQ=255) gggCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGGGCCGCCGGGCCGGGTTCCAGACCAGCTTTCAtgtg > 2:3592953/1‑149 (MQ=255) ggCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCGCCGGGCAGGTTTACAGACCAGCTTTCATGTga > 2:476921/1‑149 (MQ=255) gcgcACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGGTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTga‑g < 2:2658414/149‑1 (MQ=255) cgcacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCCGCTTTCATGTga‑ga > 2:2201537/1‑149 (MQ=255) cgcacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTga‑ga < 1:1305907/149‑1 (MQ=255) cgcacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGCCGCCGGGCCGGTTTGCAGACCAGCATTAAtgtgtgg > 1:1022117/1‑146 (MQ=255) gcacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GAt < 1:1492140/149‑1 (MQ=255) cacgcaTGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTGCGGCGTGCCGCCCGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATa > 2:1424779/1‑149 (MQ=255) ggCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGa < 2:1847840/149‑1 (MQ=255) gCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAAGTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGAt < 1:3559426/149‑1 (MQ=255) gTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCCGCGTGCCGCCGGGCAGGTTTACAGACCAGCTTTCATGTGA‑GATATCGGTGAttt > 2:1038999/1‑149 (MQ=255) gTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCGCCGGGCAGGGTTACAGACCAGCTTTCATGTGA‑GATAGCGGTGAttt > 2:2570329/1‑149 (MQ=255) ccTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGGCGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTGCGGCGGGGCGCCCGGCCGGTTTTGAGACCCCCTTTGAAGTGT‑GATATTGGTGTttttaac > 1:1221957/1‑146 (MQ=255) ggCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCCCCGGGCACGTTTACAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTg > 2:4323450/1‑149 (MQ=255) aaTCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGGTTCCCGACCAGCTTTCATGTGA‑GATAGCGGGGATTTTCCCGCTCTGGTC‑g > 2:4150999/1‑149 (MQ=255) aaTCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCCGCGGGCCGCCGGGCAGGTTTACAGACCCCCATTCAAGTGA‑GATAGCGGTGATTTTCACGCTCTGGTC‑g > 2:3695671/1‑149 (MQ=255) aTCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACGGCGTGCCGCCCGGCAGGTTTCCAGACCAGCATTCATGTGA‑GATAGCGGTGTTTTTCCCCCACTGGTC‑gg > 1:768443/1‑149 (MQ=255) aaGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCAc < 2:4489571/149‑1 (MQ=255) aaGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCAGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGACGCCCGGCAGGTTTACACAAAATCATTCATTTGA‑AATATCGGTTATTTTACAGCAATGGTA‑GGCAc > 2:3240413/1‑149 (MQ=255) gCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTGCGGCGGGCCCCCGGGGCGGGTTGCAGACCCCCGTTAATGTGT‑GTTAGCGGGGGTTTTTCCGGGCAGGTC‑GGGAccc > 2:774802/1‑148 (MQ=255) gTGGCGAGCCGCCGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGAt < 2:915638/149‑1 (MQ=255) aGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCaa < 1:1747941/149‑1 (MQ=255) gCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTACCGCGCTGGTC‑GGCACCGATACGCAAg > 2:4183754/1‑149 (MQ=255) ccGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGt < 1:2329935/149‑1 (MQ=255) cAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCt < 2:3507513/149‑1 (MQ=255) cAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCt < 1:1700559/149‑1 (MQ=255) ggCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACGGCGTGCCGCCGGGCACGGTTCCACACCACCTTTAATTTGA‑GATAGCGGTGATTTTACCGCACTGGTG‑GGCACCCATAACCCAGGGCTGa > 1:642024/1‑149 (MQ=255) ggCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGCCGCCCGGCCGGTTTACACCCCACCCGTCATGGGAGGATA‑CGGTGATTTTAACGCACTGGTC‑GGCACCGAAACGCAAATGCTGa > 2:1153375/1‑149 (MQ=255) ggCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCACGCGTGCCGCCGGGCCAGTTTAAAGAACAACTTTAATTTGT‑GATATAGGTTATTTTACCCCGCAGGTG‑GGCCCCGATACGCAAGTGGTGa > 2:1910291/1‑149 (MQ=255) ggTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAggg < 2:3857976/149‑1 (MQ=255) ggTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCGCCCGGCCGGTTTACACACCCGCGTTGATGTGT‑GATATCGGGGTTTTTACCGCGCGGGTC‑GGCCCCCATACCCACGTGCTGAAggg > 2:3890233/1‑149 (MQ=255) tATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTg < 2:3965363/149‑1 (MQ=255) aTGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTACGGCGTGCCCCCGGGCAGGTTTCCAGACCAGCATTCAAGTGA‑GATAGCGGTGATTTTCCCGCGCTGGGC‑GGCACCGATAAGCAACTGCTGAAgggggg > 2:1397276/1‑149 (MQ=255) tGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTggc < 1:2784462/149‑1 (MQ=255) tGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCCCTAAGCAAGTGCTGAAGGGTggc > 2:3001563/1‑149 (MQ=255) tGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTCCGGCGTGCCGCCGGGCCGGTTTCCAGACCACCTTTCAATTGA‑GAAATCGGTGATTTTGCCGCTCTGGGC‑GGCACCGCTAAGCCAGTGCTGAAGGGTggc > 2:2328755/1‑149 (MQ=255) gACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGCGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTggcg > 2:2646102/1‑149 (MQ=255) aTTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTggcggggc < 2:54792/149‑1 (MQ=255) aTTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGGACCGCCGTGTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTGTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTggcggggc < 2:54917/149‑1 (MQ=255) ttCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTGTGCGGCGGGCCGCCGGGCCGGTTTCCAGACCCGCGTTCATGTGA‑GATATCGGTGTTTTTACCGCGCAGGTC‑GGCACCCATAAGCAAGTTCTGAAGGGTggcggggcg > 1:361466/1‑149 (MQ=255) tCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTggcggggcgg < 2:3152989/149‑1 (MQ=255) tCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTggcggggcgg < 2:1115318/149‑1 (MQ=255) gCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCCGCGGGCCGCCGGGCCGGTTTGCAGACCAGCTTTGATGTGA‑GATAGCGGTGATTTTGCCGCACTGGTC‑GGCACCCAAACGCAACTGCGGAAGGGTggcggggcgggg > 2:167404/1‑147 (MQ=255) ccGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTGCAGAACAGCATTCATGGGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAACTGCTGAAGGGTGGCGGGGCGGGGCgt > 2:2632601/1‑149 (MQ=255) gagTAATTCGCTGTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTAt < 1:551046/149‑1 (MQ=255) agTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTAtt < 2:161030/149‑1 (MQ=255) agTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTAtt < 2:2249547/149‑1 (MQ=255) agTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTAtt < 1:4154212/149‑1 (MQ=255) agTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTAtt < 1:4324222/149‑1 (MQ=255) gTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTg < 1:3097835/149‑1 (MQ=255) gTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTg < 1:2723447/149‑1 (MQ=255) aTTCGCTTTGCTGTACCGCCGTTTCCGACGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATAAGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGa > 1:4472867/1‑149 (MQ=255) ttCGCTTTGCTGTACCGCCGTTTGCCGGGGGCCGCCCGGCAGGGTTCCAGACCCGCGGTGAAGGGT‑GTTAGCGGGGATTTTACCGCTCTGGTCGGGCACC‑ATACGCAAGGGGTGAAGGGGGGGGGGGCGGGGGGGGGGGTTTTTGGGag > 2:86637/1‑148 (MQ=255) ttCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGaa < 2:1276121/149‑1 (MQ=255) tCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAAt < 1:2846339/149‑1 (MQ=255) cTTTGCTGTACCGCCGTTTTCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGT‑GATATCGGTGATTTTACCGCTCTGGTC‑GGGACCCCTACGCAAGTGCGGAAGGGTGGCGGGGCGGTGCGTGGTGTTTTTTGGGATaga > 2:2137366/1‑149 (MQ=255) tttGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATagag < 2:3898033/149‑1 (MQ=255) tttGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATagag < 1:484862/149‑1 (MQ=255) cTGTACCGCCGTGTGCGGCGTGCCCCCCGGCACGTTTACACACCCCCATTAATGTGA‑GATAGCGGTGATTTTACCCCGCGGGTC‑GGCACCCAAAACCCACTGCAGAAGGGTGGCGGGGCGGGGCGGGGGGTTATTGGGGAAAGAGGGGc > 2:3171934/1‑149 (MQ=255) tGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCg < 1:2922167/149‑1 (MQ=255) tGTACCGCCGTGTCCGGCGGGCCCCCGGGCAGGTTTACAGACCAGCTTTCAAGTGA‑GATATCGGGGGTTTTCCCCCGCAGGTC‑GGCACCGATACCCCAGTGCTGAAGGGTGGCGGGGCGGGGGGTGGGGGTATTGGGCATAGAGGGGCg > 2:198741/1‑149 (MQ=255) tACCGCCGTTTACCGCCTGCCCCCCGGCAGGTTTACACAACACCATTAAAGTGA‑GATATCGGTGATTTTACCCCTCAGGTA‑CGCACCCATAACCAACTTCAGAATGGTGGCGGGGCGGTGCGTGGTGTTATTTGGAATAGATGGGCggg > 2:3006655/1‑149 (MQ=255) cgccgTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGa < 2:4049303/149‑1 (MQ=255) gccgTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAg < 1:3292025/149‑1 (MQ=255) gTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCAt < 2:433131/149‑1 (MQ=255) gTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCAt > 2:825875/1‑149 (MQ=255) gTTTCCGGCGTGCCGCCGGGCAGGTTGCCAGACCAGCTTTCAGGTGA‑GATAGCGGTGATTTTCCCGCTCGGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCAt < 2:1939427/149‑1 (MQ=255) | CGTCGATCGCGATTTCGAGCGCCATCAGACCGGGGGCTTCGCCGGGCGCACGCATGGCGTTCCCTTCCGGCAAATCAAGCGTGGCGAGCCGCAGGCCGGTATGACGATTCGCCCCGGCGTAGAGTAATTCGCTTTGCTGTACCGCCGTTTCCGGCGTGCCGCCGGGCAGGTTTCCAGACCAGCTTTCATGTGA‑GATAGCGGTGATTTTCCCGCTCTGGTC‑GGCACCGATACGCAAGTGCTGAAGGGTGGCGGGGCGGTGCGTGGTGTTATTGGGAATAGAGGGGCGGGGGAGCATC > CP009273/295547‑295842 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |