Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,207,958 G→T 11.4% intergenic (‑499/+201) iraM ← / ← ycgX RpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,207,9580GT11.4% 713.1 / 11.8 237intergenic (‑499/+201)iraM/ycgXRpoS stabilzer during Mg starvation, anti‑RssB factor/DUF1398 family protein
Reads supporting (aligned to +/- strand):  ref base G (67/133);  new base T (35/2);  total (102/135)
Fisher's exact test for biased strand distribution p-value = 8.64e-13
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 240 total aligned reads displayed.

GAATAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCAT  >  CP009273/1207811‑1208106
                                                                                                                                                   |                                                                                                                                                    
gaATAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGt                                                                                                                                                     <  1:927610/149‑1 (MQ=255)
gaATAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGGTTTTATAAATATGt                                                                                                                                                     >  1:1008463/1‑149 (MQ=255)
 aaTAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAATAtttt                                                                                                                                                    >  1:3705258/1‑149 (MQ=255)
 aaTAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGtt                                                                                                                                                    <  1:2757033/149‑1 (MQ=255)
 aaTAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGtt                                                                                                                                                    <  2:2006273/149‑1 (MQ=255)
   tAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTaa                                                                                                                                                  <  2:423947/149‑1 (MQ=255)
   tAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTaa                                                                                                                                                  >  2:1215946/1‑149 (MQ=255)
    aaGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAc                                                                                                                                                 <  2:2349048/149‑1 (MQ=255)
       gTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACAGt                                                                                                                                              >  2:3301183/1‑149 (MQ=255)
         ttCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTta                                                                                                                                            <  1:415515/149‑1 (MQ=255)
          gcAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTtat                                                                                                                                           <  2:3152139/148‑1 (MQ=255)
              tttttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTTAAAATTTTAAACAGTATaaaa                                                                                                                                       >  1:3465732/1‑149 (MQ=255)
                tttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATa                                                                                                                                     >  2:1872681/1‑149 (MQ=255)
                tttGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTATATATGTTGAACGTTATTAAATa                                                                                                                                     >  1:2727002/1‑149 (MQ=255)
                     gTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTa                                                                                                                                <  1:2868861/149‑1 (MQ=255)
                      ttATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTTACCGTTTTAAAATaaattct                                                                                                                               >  2:3969413/1‑144 (MQ=255)
                      ttATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTAt                                                                                                                               <  2:496157/149‑1 (MQ=255)
                          ataGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTATaaaa                                                                                                                           >  2:622336/1‑149 (MQ=255)
                             ggAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGGTATAAAAAAACGTATCAAAAGt                                                                                                                        >  1:735185/1‑149 (MQ=255)
                                           tGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATTTTAAACGTTATAAAAAAAAGTATCAAAATTCAAGTGATcacaat                                                                                                          >  1:707659/1‑147 (MQ=255)
                                               ccTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAACCGTTATAAAAAAAAGTATCAAAATTCAAGTGATAACATTTaaa                                                                                                      >  1:723548/1‑149 (MQ=255)
                                               ccTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCaa                                                                                                      <  1:1365544/149‑1 (MQ=255)
                                                cTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGGTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCaaa                                                                                                     >  1:2238702/1‑149 (MQ=255)
                                                 tGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATGTTAACCGTTTTAAAATAACGTATCAAAAGTCACGTGAGCACATTTAAAat                                                                                                    >  1:333333/1‑149 (MQ=255)
                                                   gCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAACGTTATAAAATAACGTATCAAAAATCAAGTGATAACATTTAAAatat                                                                                                  >  2:4099393/1‑149 (MQ=255)
                                                    cTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATc                                                                                                 <  2:2044650/149‑1 (MQ=255)
                                                      aaaaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCaa                                                                                               <  2:4282603/149‑1 (MQ=255)
                                                       aaaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAg                                                                                              >  2:325924/1‑149 (MQ=255)
                                                       aaaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAAAATTTTAAACGTTATAAAATAAAGTATAAAAAATAAAGTGATAACATTTAAAATATAAAg                                                                                              >  1:3785401/1‑149 (MQ=255)
                                                        aaTACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGt                                                                                             <  2:2485567/149‑1 (MQ=255)
                                                          tACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAACGTTATTAAATAACGTATAAAAATTAAAGTGATAAAAATTAAAATATAAAtttt                                                                                           >  2:1702051/1‑148 (MQ=255)
                                                          tACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTg                                                                                           <  2:3384104/149‑1 (MQ=255)
                                                            cATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGAt                                                                                         <  2:2550131/149‑1 (MQ=255)
                                                             atatAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAAAATTTTAAACCTTATAAAAAAAAGTAAAAAAAATCAACTGATCAAAATTAAAATATAAAATTGATa                                                                                        >  1:4074280/1‑149 (MQ=255)
                                                                 aaCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCCCGGCCGTTGTTTTTATAAATATTTTAAACGTTTTAAAATAACGTATCAAAATTCAAGTGATCACATTTCAAATGTAAAGTTGTTAggtg                                                                                    >  2:2843189/1‑146 (MQ=255)
                                                                 aaCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAt                                                                                    <  1:291212/149‑1 (MQ=255)
                                                                  aCCGGATTATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAtt                                                                                   <  1:4322245/149‑1 (MQ=255)
                                                                  aCCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTAtt                                                                                   <  1:1037213/149‑1 (MQ=255)
                                                                   ccGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTa                                                                                  <  2:4014858/149‑1 (MQ=255)
                                                                    cGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTTTAAATATGTTAACCGTTATAAAATAACGTATCCAAAGTCAAGTGATCACAATTAAAATTTAAAGTTGttattattat                                                                                 >  1:2608706/1‑148 (MQ=255)
                                                                    cGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAg                                                                                 <  2:103315/149‑1 (MQ=255)
                                                                    cGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTTTTAAAATTTTTAACCTTATAAAAAAAAATAAAAAAAATAAAATTATCAAAATTAAAAAATAAAGTTGTTAGTATTat                                                                                 >  1:3492131/1‑148 (MQ=255)
                                                                    cGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATTTTTAACCTTATAAAAAAACGTATAACAAGTCAAGTGATAAAAATTAAAATATAAATTTGATAttattat                                                                                 >  1:2959137/1‑148 (MQ=255)
                                                                     ggATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAATATTTTTACCGGTATAAAAAAAAGTATAAAAAGTCAAATGTTCAAAATTAAAATATAAAGTTGTTAGttttttt                                                                                >  1:270673/1‑146 (MQ=255)
                                                                      gatgatGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTc                                                                               <  1:1438988/149‑1 (MQ=255)
                                                                      gatgatGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAAAATTTTAAACGTTATAAAATAACGTATCAAAAGTCAAGTGATCAAAATTAAAAAATAAAGTTTATAGTATTAGta                                                                               >  2:3537899/1‑148 (MQ=255)
                                                                       atgatgACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAACGTTATAAAATAAAGTATAAAAAGTCAAGTGATCACATTTAAAATATCAAGTTGATATTATTAGtgt                                                                              >  2:1817222/1‑147 (MQ=255)
                                                                        tgatgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTGGTTTTTATAAAAATTTTAACCCTTATAAAAAAACCGATAAAAACTCACCTGATCACAATTAAAAAATAAACGTGATAGTAATATTcgg                                                                             >  1:1815773/1‑147 (MQ=255)
                                                                         gatgaCTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCCTTATAAAAAAACGTATCAAAAGTCAAGGGATCACCTTTCAAAAATAAATTTGATATTATTATTGTgg                                                                            >  1:3774000/1‑149 (MQ=255)
                                                                            gaCTACACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGa                                                                         <  2:2483424/149‑1 (MQ=255)
                                                                              cTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGatt                                                                       <  1:2432104/149‑1 (MQ=255)
                                                                              cTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGatt                                                                       <  1:801260/149‑1 (MQ=255)
                                                                                 aaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATTAATATTTTAAACCTTATAAAATAAAGTATCAAAATTAAAGTGATCACATTTAAAATATAAATTTTTTATTATTATTATGGTGattatt                                                                    >  2:150709/1‑149 (MQ=255)
                                                                                 aaCCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGattatt                                                                    <  1:2460307/149‑1 (MQ=255)
                                                                                       aaTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAAACGTTATAAAATAACGTATCAAAAGTAAAATGATCAAATTTAAAATATAAAGTTGATAGTATTAGTGTTGTGATTATTTATtgg                                                              >  2:2414575/1‑149 (MQ=255)
                                                                                       aaTACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATggg                                                              <  1:1276245/149‑1 (MQ=255)
                                                                                        aTACCTGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGt                                                             <  2:3187744/149‑1 (MQ=255)
                                                                                           cctgtgCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGAc                                                          <  2:2749642/147‑1 (MQ=255)
                                                                                                    tAAGTATTGAAACGGACGTGTGGCCCGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAAAGTATCAAAATTCAATTGTTCACATTTCAAATATAAAGTTGATAGTATTAGTCTGGTGTTTATTTTTGTGTTAAAATaaaaat                                                 >  2:2613239/1‑148 (MQ=255)
                                                                                                    tAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAg                                                 <  2:3573834/149‑1 (MQ=255)
                                                                                                     aaGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAAAATTTTAAACGATTTAAAATAAAGTATAAAAAGTCAAATTGTAACAATTAAAAAATAAAAATTTTATTATTATTATTGTGTTTATTTTTTGGTGaaaaaaaaaaaa                                                >  1:4507116/1‑147 (MQ=255)
                                                                                                       gTATTGAAACGGACGTGTGGCCCGGCCGTGGTTTTTTTAAATAATTTAAACCATAAAAAAAAAAATATAAAAAATCAATTGATAACAATTAAAAAAAAAACATGAAAATAATTTTGAGGTGTTTATTTATTGGTTaaaaaaaaaaaaaa                                              >  1:3291645/1‑145 (MQ=255)
                                                                                                       gTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACa                                              <  2:260579/149‑1 (MQ=255)
                                                                                                       gTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACa                                              <  2:579162/149‑1 (MQ=255)
                                                                                                          ttGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTa                                           <  2:4161604/149‑1 (MQ=255)
                                                                                                             aaaCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTa                                        <  2:1008463/149‑1 (MQ=255)
                                                                                                             aaaCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAAACGTTATAAAATAACGTATCAAAAGTCAAGTGATAACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGTTTATTTTTGGGTGTAAATAAAAATTCAttatta                                        >  1:1503079/1‑149 (MQ=255)
                                                                                                               aCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAat                                      <  1:3408890/149‑1 (MQ=255)
                                                                                                               aCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAat                                      <  1:4099387/149‑1 (MQ=255)
                                                                                                               aCGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGGTATAAAATAACGTATAAAAAGTCAAGTGATCACATTTCAAATATAAAGTTGATAGTTTTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACATTATTAat                                      >  2:4048890/1‑149 (MQ=255)
                                                                                                                cGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAatc                                     <  2:4477017/149‑1 (MQ=255)
                                                                                                                cGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAatc                                     <  2:660330/149‑1 (MQ=255)
                                                                                                                cGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAatc                                     <  2:3272344/149‑1 (MQ=255)
                                                                                                                  gACGTGTGGCACGGCCGTTGTTTTTATAAATATTTTAACCGTTATAAAATAAAGTATCAAAAGTCAAGTGATAACAATTAAAAAATAAATTTGATAGTATTATTATTGTTATTATTTATTGGTGAAAATAAAAAGAAAGTATTaaaaaa                                   >  2:4411444/1‑145 (MQ=255)
                                                                                                                   aCGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAatcatc                                  <  2:4490441/149‑1 (MQ=255)
                                                                                                                    cGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATcc                                 <  2:385282/149‑1 (MQ=255)
                                                                                                                    cGTGTGGCACGGCCGTTGTTTTTATAAATAGGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATcc                                 <  2:2676326/149‑1 (MQ=255)
                                                                                                                       gtgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATa                              <  2:966507/149‑1 (MQ=255)
                                                                                                                       gtgGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATa                              <  2:2900370/149‑1 (MQ=255)
                                                                                                                           cACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAgaga                          <  1:2360557/149‑1 (MQ=255)
                                                                                                                            aCGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGAt                         <  1:3107244/149‑1 (MQ=255)
                                                                                                                              ggCCGTGGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAg                       >  2:769800/1‑149 (MQ=255)
                                                                                                                               gcagttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATAAAAAGTCAAGTGATCACAGTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGt                      <  2:2737372/146‑1 (MQ=255)
                                                                                                                                cagttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGtc                     <  2:3072199/147‑1 (MQ=255)
                                                                                                                                   ttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTctct                  >  2:3661756/1‑149 (MQ=255)
                                                                                                                                   ttgttTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACAATTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGTGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTctct                  <  1:786035/149‑1 (MQ=255)
                                                                                                                                       ttttATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCAc              <  1:3537899/149‑1 (MQ=255)
                                                                                                                                           ataAATATTTTAACAGTTATAAAATAACGTATCAAAAGTCAAGTTATCACATTTCAAATATAAAGTTTATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACtttt          <  2:4203096/149‑1 (MQ=255)
                                                                                                                                            taAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTa         >  2:3816445/1‑149 (MQ=255)
                                                                                                                                             aaaTATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTAt        <  2:2139151/149‑1 (MQ=255)
                                                                                                                                              aaTATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTAtt       >  1:2981665/1‑149 (MQ=255)
                                                                                                                                               atatGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTGTTAttt      >  2:1190467/1‑149 (MQ=255)
                                                                                                                                                tatGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTc     <  2:475652/149‑1 (MQ=255)
                                                                                                                                                tatGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTc     <  1:2125209/149‑1 (MQ=255)
                                                                                                                                                tatGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTc     <  1:1215946/149‑1 (MQ=255)
                                                                                                                                                 atGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTcc    <  1:2028468/149‑1 (MQ=255)
                                                                                                                                                 atGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTcc    <  1:2482523/149‑1 (MQ=255)
                                                                                                                                                  tGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCa   <  1:1546555/149‑1 (MQ=255)
                                                                                                                                                  tGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCa   <  1:325924/149‑1 (MQ=255)
                                                                                                                                                   gTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCAt  <  2:1668189/149‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                    
GAATAAGGTTTCAATTTTTGAGTTATATAGGAATGATTTAACCTGTTCCTGGCTAAAATACATATAACCGGATGATGACTAAACCAAAATACATGTGCGTTAAGTATTGAAACGGACGTGTGGCACGGCCGTTGTTTTTATAAATATGTTAACCGTTATAAAATAACGTATCAAAAGTCAAGTGATCACATTTCAAATATCAAGTTGATAGTATTAGTCTGGTGATTATTTATGGGTGACAATAAAAAGACAGTATTAATCATCCATAGAGATAGTCTCTGCACTTTTATTTCCAT  >  CP009273/1207811‑1208106

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: