| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,724 | G→T | 28.2% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,724 | 0 | G | T | 28.2% | 348.8 / 19.9 | 182 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (55/63); new base T (32/27); total (87/95) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.45e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 186 total aligned reads displayed.
TTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATA > CP009273/2170576‑2170872 | ttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATg < 2:664370/149‑1 (MQ=255)ttCTACCACCACTTGCATCGTTTCGAGAGTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATg < 2:3690841/149‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGa < 1:2590263/149‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGaaa < 1:3064247/149‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGaaa < 1:1929354/149‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAat < 1:4238067/149‑1 (MQ=255) ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAattatt < 2:3009850/149‑1 (MQ=255) acTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTg < 1:2277863/149‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGt < 2:2060401/149‑1 (MQ=255) cTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGt < 1:748486/149‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGtt < 1:1378224/149‑1 (MQ=255) tGCATCGTTTCGAGATTTTGAATATTGAATGCCGGAACCGCATAACCGACGCGCTGTGAGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATACTGTCGT‑TTGTTTTCGATTTCTAAATTTTATGAAATTATTTGttt < 1:2979082/149‑1 (MQ=255) tGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGttt < 2:3589886/149‑1 (MQ=255) gCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGtttt < 1:4371432/149‑1 (MQ=255) cATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGttttt < 2:2702789/149‑1 (MQ=255) tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGAATTCAAAAAATAATTAAATTATTTTTTTTTaa > 2:4102089/1‑149 (MQ=255) cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTaaa < 2:4327239/149‑1 (MQ=255) cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTaaa < 1:4378527/149‑1 (MQ=255) gtgtCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGAGACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAat < 1:4230131/146‑1 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGATTTAAAAAAATAATGAAATTAATTTTTTTTAAat > 2:2448972/1‑149 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAat < 1:4479579/149‑1 (MQ=255) gTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAat < 1:2620772/149‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATTAAATTATTTTTTTTTAAata > 2:1477071/1‑149 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGATTTAAAAAAATAAAGAAAATATttttttttttata > 1:3278633/1‑144 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATc < 1:2529312/149‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCga < 2:2275250/149‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCGATTTAAAAATATAAAGAAAATATTTTTTTTTAAAAATCga > 2:2355496/1‑149 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGGTTTAGATTTAAAAATAAAAATAAAATATTTTTTTTTTAatttata > 2:2355987/1‑144 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGA‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCga < 2:3750328/149‑1 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTCGATTTGAAAATATAATTAAATTTTTTTTTTTTAAATATagag > 2:913823/1‑149 (MQ=255) agaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTTTTTTAGATTTAAAAAAAAAAATAAAATATTTTTTTTTTAataaaaat > 1:2199164/1‑144 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGATTTAAAAAAATAATTAAATTATTTTTTTTTTAatttagata > 2:3899167/1‑142 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgag‑a < 2:1617572/149‑1 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATaa < 2:3638755/149‑1 (MQ=255) tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATca < 1:609988/149‑1 (MQ=255) ttGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTGGATTTAAAAAAAAAAATAAAATATTTTTTTTTTAATAACTAG‑ATAAAGaaaaaa > 2:401812/1‑144 (MQ=255) aTGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAAAGAAATTATTTTTTTTTAAATATAGAG‑ATAACGATCACaaaaa > 2:4570766/1‑149 (MQ=255) ccGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGa < 2:1343753/149‑1 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTAGATTTCAAAATATAATTTAATTATTTTTTTTTAAATATAGAG‑ATAAAGATCAAAAAAAAGaaa > 2:1083198/1‑147 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTTGTTTT‑GTTTTAAAAATATAAATAAAATATTTTTTTTTTTATATATAT‑ATAAAGATAACaaaaaacaaaa > 1:3910486/1‑143 (MQ=255) gAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCGATTTCAAAAAATAATGAAATTATTTTTTTTTAAATATCTAG‑ATAACGATCACAAAAACGACaa > 2:2121173/1‑149 (MQ=255) aCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGATTTCAAAAAAAAATTTAAATATTTTTTTTTTAATATAGAT‑ATAACGATCACAAAAAAAACaaaa > 1:1039444/1‑147 (MQ=255) aCCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAGTTTTAAAAATAAAATTAAAATATTTTTTTTTTAATATAGAGAATAACGAAAACAAAAAcaacaaa > 1:1039302/1‑148 (MQ=255) cGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGATTTAAAAATATAATGAAATTATTTTTTTTTTAATATAGAG‑ATAAAGATCACAAAAAAGACacaatt > 2:1662503/1‑144 (MQ=255) aTAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTTGATTTAAAAATATAATTAAAATTTTTTTTTTTTTATATATAG‑TTAAAGATAAAAAAAAAGACAAAATTaaa > 2:5090/1‑149 (MQ=255) aCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAAAATCGAG‑ATAACGAACACAAAAACCACAATATGAAAatt > 2:3014373/1‑149 (MQ=255) aCCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGGTTTAGATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAatt > 2:3014365/1‑149 (MQ=255) ccgcGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTc < 2:709094/149‑1 (MQ=255) ccgcGCTGTGCGTTGTCCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCTATTTCAAAATATAATGAAATTTTTTGTTTTAAAATATCGAG‑ATAACGATCACAAACACGACAATATGAAAATTATTc < 1:2649852/149‑1 (MQ=255) tgtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTAGATTTAAAAATAAAAAGAAAATATTTTTTTTTTAATATAGAG‑ATAAAAATAACAAAAAACACAAAAATAAAAATATTAgaggag > 2:2779335/1‑149 (MQ=255) gtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTGGATTTGAAAAAATAAATAAATTATTTTTTTTTATAAATAGAG‑ATAAAGTTCAAAAAAAAGACAAAATTATAATTATTAgaggtgg > 1:2647492/1‑146 (MQ=255) gCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCGATTTCAAAAAAAAAAGCAATTATTTGTTTTTAAAAATAGAG‑ATAACCATCACAAAAACCACAAAATGAAAATTATTCGAGGCGTGAAAGGCaaaaa > 2:4034783/1‑149 (MQ=255) gCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑GTGTTTTCGAGTTAAAAAAAAAAATAAAATATTTTTTTTTAAATATAGAG‑CTAACCAACACCAAAACCACAAAATGACAATTATTAGAGGCGGGCAAGGCacaaa > 2:4034707/1‑149 (MQ=255) ccATTTGCTTTTTCTATACCACTTAATTTTTAATATCCTTTTTT‑TTTTTTTCTATTAAAAAATATAATCAATTTTTTTTTTTTAAAATATCTAT‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaa < 1:4429349/148‑1 (MQ=255) aTCTGCTTTGTCTATACCCCGTAATTTTTCATATCCTGTCGT‑TTTTTTTCTATTACAAAATATAATTAAATTATTTTTTTTTAAATATCGAG‑ATAACGATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaaa < 1:3783637/149‑1 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTAGATTTAAAAAAAAAATTAAAATAATTTTTTTTAAATAAAGAT‑ATAAACAAAAAAAAAAAAAAAAAAATAAAAATATTAGATGTGTGAAATGCaaaaaaa > 2:482781/1‑149 (MQ=255) aTCTGCTTTGCCTATACCACGAACATTTACATAACCTGTCGT‑TTTTTTTCGATTAAAAAATATAATTAAATTATTTGTTTTTAAATATCGAT‑ATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCaaaaaaa < 1:4501651/149‑1 (MQ=255) cTTTGTCTATACCACGTAAATTTTCATATCCTGTCTT‑TTTTTTTCTATTTAAAAATATAATTAAATTATTTTTTTTTAAATATCGAT‑ATAACTAACAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGcc < 2:347075/149‑1 (MQ=255) cTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTTTTTTGGATTTCAAAATATAATGTAATTATTTTTTTTTAAATATCGAG‑ATAAAGATAACAAAAAAGACAATATTAAAAATATTAGAGGTGTGAAATGCCAAAAAAAGGcc > 2:3376890/1‑149 (MQ=255) ctaaaacACTTAAATTTTATTATCTTTTAGT‑TTTTTTTCTATAAAAAAATAAAATTAATTTTTTTTTTTTAAAATATCTAT‑AAAAATATAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGa < 1:4257293/143‑1 (MQ=255) aCCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTGAAAATATAATTTAATTTTTTTTTTTTTTATATAGAG‑ATAACGATAACAAAAACGACAATATGTAAATTATTAGGGGAGTGGAAGGCAAAAAAAAGGGCTACCGCTAgg > 2:3024608/1‑149 (MQ=255) aCGTATATTTTAATACCCTGTGGT‑TTGTTTTCTATTACAAAATATATTTAAATTTTTTTTTTTTAAATATCTAT‑ATAACTATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGaa < 1:2425215/149‑1 (MQ=255) aCGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAAAATAATGAAATTATTTTTTTTTAAATATAGAG‑ATAACGATAACAAAAACGACAATATTTAAATTATTCGAGGAGTGAAATGCAAAAAAACCGCCACCCGAGAGGGaa > 2:1836701/1‑149 (MQ=255) aTTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTa < 2:2669969/149‑1 (MQ=255) ttttCATATCCTGTCGT‑TTTTTTTAGATTTCAAAATAAAAATAAATTATTTGTTTTTTAATATAGAG‑ATAAACATAACAAAAAACACAATATTAAAAATATTAGAGGAGTGAAAGGCAAAAAAAACGCCACCCCATAGGGAAGCCGTAg > 2:1778090/1‑149 (MQ=255) taatatCCTGTGTT‑TTTTTTTATATTAAAAATTATAATTAATTTTTTTTTTTTTAAATATCGAT‑ATAACTAACACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGTCGTAGCaa < 1:1606438/147‑1 (MQ=255) atatCCTGTCTT‑TTTTTTTCTATTAAAAAATAAAATTAAATTATTTTTTTTTAAATATCTAT‑ATAACTATCAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAg < 1:1815438/149‑1 (MQ=255) tGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAT‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGCGGAGTGAAAGGCAAAAAAAAGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGcgcg > 2:4440647/1‑149 (MQ=255) gt‑ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 1:3132300/1‑149 (MQ=255) gt‑ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt > 2:3414931/1‑149 (MQ=255) t‑ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 2:3878789/1‑149 (MQ=255) t‑ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttt > 1:1726926/1‑149 (MQ=255) gttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGACGCCGTAGCAAAGTGCGCGTGttt > 1:4032616/2‑149 (MQ=255) tttttttCGATTAAAAAATAAAATCAATTTTTTTTTTTTTAAATATCTAT‑ATAACTAAAAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtttt < 1:2355496/146‑1 (MQ=255) tttttCTATTTCAAAATATAATTAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa < 2:4037375/148‑1 (MQ=255) tttttCGATTTAAAAATATAATTAAATTATTTTTTTTTAAATATCGAG‑AAAACGATAAAAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa < 2:2436368/148‑1 (MQ=255) ttttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:2138919/1‑149 (MQ=255) tttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATg > 2:418159/1‑149 (MQ=255) tctttttCAAAATATAATTAATTTATTTTTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc < 1:4102089/145‑1 (MQ=255) gATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCgg > 1:2587162/1‑149 (MQ=255) ttttAAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACTATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa < 2:1996988/148‑1 (MQ=255) attaaaaaaTATATTTAAATTATTTTTTTTAAAATATCTAT‑ATACCTAACAAAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa < 1:1576641/144‑1 (MQ=255) attaaaaaaTATAATTAAATTATTTGTTTAAAAATAACGAT‑AAACCGACCACAAACCCGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa < 1:1576627/144‑1 (MQ=255) aTTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa > 1:3543825/1‑149 (MQ=255) aTTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa > 1:1402811/1‑149 (MQ=255) aTTTAAAAATTTAATGAATTTATTTTTTTTTAAATATCGAT‑ATAACGATCAAAACAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGa < 2:1996983/149‑1 (MQ=255) tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 1:1130957/1‑149 (MQ=255) tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt > 2:2903043/1‑149 (MQ=255) cAAAATATAATAAAATTATTTTTTTTTAAATATCGAT‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCg < 1:3739224/149‑1 (MQ=255) aaaaTATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGTAGTGAAAGGCAAAAAAACGGCCTCACGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 1:2107623/1‑149 (MQ=255) aaaaTATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg > 1:1452116/1‑149 (MQ=255) aaaaTATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCgg < 2:3278633/149‑1 (MQ=255) aaTATAATGAAATTTTTTTTTTTTAAATATCGAG‑ATAACGAACACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtg < 1:3399544/149‑1 (MQ=255) ataATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa > 2:193243/1‑149 (MQ=255) taataaATTTATTTTTTTTAAAATATCGAG‑ATAACTATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa < 1:119362/149‑1 (MQ=255) taATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa > 2:1588756/1‑149 (MQ=255) taATGAAATTATTTGTTTTAAAATATCGAG‑ATAACGATCACAAACACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa < 2:543006/149‑1 (MQ=255) aTGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 1:2471422/1‑149 (MQ=255) tGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACAt > 2:845468/1‑149 (MQ=255) gAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATa > 1:923452/1‑149 (MQ=255) | TTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGT‑TTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAG‑ATAACGATCACAAAAACGACAATATGAAAATTATTCGAGGAGTGAAAGGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATA > CP009273/2170576‑2170872 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |