| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,479 | C→G | 8.4% | intergenic (‑92/+338) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,479 | 0 | C | G | 8.4% | 787.4 / 8.2 | 249 | intergenic (‑92/+338) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base C (134/87); new base G (2/22); total (139/110) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.09e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 250 total aligned reads displayed.
TGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCG > CP009273/3385332‑3385627 | tGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCg > 2:3544008/1‑149 (MQ=255) aTGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑t > 2:523686/1‑149 (MQ=255) gTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑ttt > 1:1777899/1‑149 (MQ=255) tttCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTg > 2:2535795/1‑149 (MQ=255) tCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTa > 2:1408512/1‑149 (MQ=255) cAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAg < 2:3549066/149‑1 (MQ=255) gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGcc > 1:4401475/1‑149 (MQ=255) gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGcc < 2:2017925/149‑1 (MQ=255) ggtCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGa < 2:1383139/147‑1 (MQ=255) ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGAt < 1:3492964/149‑1 (MQ=255) ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGAt < 1:886543/149‑1 (MQ=255) gccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAg < 2:1901621/149‑1 (MQ=255) ccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGa < 2:3602080/149‑1 (MQ=255) cgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGAc < 1:3900963/149‑1 (MQ=255) tAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGca > 1:1246882/1‑149 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGcac > 1:3863967/1‑149 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGcac < 1:2251047/149‑1 (MQ=255) aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGcac < 1:2178265/149‑1 (MQ=255) gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:291543/1‑149 (MQ=255) gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:3317533/1‑149 (MQ=255) gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTATACGGCTGCCGGATGAGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGG‑TTTGTAGGCCTGATACGACGCACAGCGTCg > 1:291316/1‑149 (MQ=255) ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGc < 2:1514606/149‑1 (MQ=255) ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGc < 2:3826349/149‑1 (MQ=255) cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 1:968553/1‑149 (MQ=255) cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 2:3358687/1‑149 (MQ=255) cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGAACAGCGTCGCAt > 2:627355/1‑149 (MQ=255) aCTTACCAGGTTAAGACTCATCGTTTGTGCTACTCGTTAGTGACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 2:2306419/149‑1 (MQ=255) cTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa < 2:572771/149‑1 (MQ=255) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑CTAGTAGGCCTGATAAGACGAAAATCGTCGCATAAgcc > 2:3132272/1‑147 (MQ=38) cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa < 1:306765/149‑1 (MQ=255) aGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGACGAATCAGGCAAc > 2:414774/1‑149 (MQ=255) aGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑ATAGTAGGCCTGATAAGACGCACAGCGTCGCAGCAGGCAAc > 2:2812119/1‑149 (MQ=255) gTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgg > 2:4076504/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:4171778/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:4171864/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 2:2667710/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:1047318/1‑149 (MQ=255) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCtctc > 1:2105087/1‑149 (MQ=255) aCTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCg > 1:501462/1‑149 (MQ=255) tCATGGTTTTTGCTACTGTTTTTTTACTGCAGTAGTGGATTTTTTCCGGCTGCCGGAGGGGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCGGT‑TTTGTTGGCGTGATAAGCCGCACAGCGTCGCATCAGGCAACGGCTGTCGGa < 2:4455670/149‑1 (MQ=18) cATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGG‑GTAGTAGGCCTGATAAGACGCACAGCGTCGCAGAAGGCAACGGATGTCggca > 1:1860147/1‑147 (MQ=25) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATg > 2:425337/1‑149 (MQ=255) tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCTGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCCG‑TAAGAAGGCCAGAAAAGACTCAAATCTACGCAACATCCAACGCCTCTCGCAtcc > 1:3268765/1‑147 (MQ=21) ttttGCTACTCTTTTGTTACTGCAGTTGAGGATTTTTTCCGGCTGCCGGATGCGGCGTTAACGCCCTAACCAGCCTACGGTTATGTTCCGG‑TTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg < 2:2138209/149‑1 (MQ=18) tttGCTACTCTTTAGTTACTGCAGTCGTGTTTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTCCGTTTTGGTTCGGT‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCACCAGCCAACGGCTGTCGGATGCGGCGt < 2:131544/149‑1 (MQ=18) tttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:4517035/1‑149 (MQ=255) cTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAAc > 1:4073544/1‑149 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAATACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACg > 1:2688636/1‑149 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACg > 1:929798/1‑149 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACg > 1:3167162/1‑149 (MQ=255) aCTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGc > 1:4248827/1‑149 (MQ=255) aCTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTAGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAGCGGCTGTCGGATGCGGCGTAAACGc > 1:3330956/1‑149 (MQ=255) tCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCt > 1:3406269/1‑149 (MQ=255) gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGT‑TTTGTAGCCATGATAAAACCAACAGCGACCCAAAAGCAAACGCATCACGGATCCGCCGTAAACGCCtaa > 2:101680/1‑147 (MQ=21) ttagttaCTGCAGTTGTGTTTTTTTTACGGCTGCCGTTTGGGGCGTTAACGCCATATCCTGCCTAGGTTTATGGTCCGT‑TTTTTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt < 2:1039612/149‑1 (MQ=17) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGAAAACGCCTTATCCg > 1:3763041/1‑149 (MQ=255) taCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGGCCTACGGTTATGTTCCGG‑GTAGTTGGCCTGATACGACGCTCAGCGTCGCATCAGGCACCAGCTCCCGGAGCCCGCGAAAAAGCCTAATCCGAc > 1:239677/1‑149 (MQ=21) taCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGAc > 1:2531302/1‑149 (MQ=255) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc > 1:360730/1‑149 (MQ=255) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc > 1:1355992/1‑149 (MQ=255) ctgctgTAGTGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:2579971/149‑1 (MQ=255) cTGCAGTCGTGGTTTTTTTACGGCTGCCGGTTGCGGCGTGAACGCCCTATCCAGCCTACGTTTATGTTCCGG‑TTTGTAGGCCTGATAAGCCGCACTGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:1735927/149‑1 (MQ=17) cTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:2934937/149‑1 (MQ=255) gCAGTAGCGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTAGGGTTATGTTCCGT‑TTTGTAGGCCTGATAAGACGCACTGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 2:3979712/149‑1 (MQ=255) gCAGTAGAGTATTTTTTACGGCTGCCGGATGCGGCTTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 2:3768786/149‑1 (MQ=255) tgtaTTTTTTCCGGCTGCCGGTGGCGGCGTGACCGCCCTATCCAGCCTAGGTTTTTGTTCGGT‑TTTGTCGGCCTGATAAGCCGCACAGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATg < 1:4497031/146‑1 (MQ=17) ggATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAACCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAATACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTGAACGCCATATCCGACCTACGGTTATGt > 1:1569380/1‑149 (MQ=14) ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTca > 1:459231/1‑148 (MQ=255) tttACGGGGGCCGGAGGCGGGGTGAACGCCCTAGCCAGCCTAGGGTTTTGTTCGGT‑TTTGTAGGCCTTATAAGACGCACTGCGTCGAATATGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt < 2:1197151/149‑1 (MQ=17) ttccggcggCCGGATGCGGCGTGACCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTCGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 2:2036182/146‑1 (MQ=17) agggCTGCCGGATGGGGCGTTAACGCCCTAACCCCCATAGGGTTATGTTCCGT‑TTTGTAGGCCTTATAAGACCCACAGCGTCGCATCAGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGt < 1:2841351/147‑1 (MQ=14) aCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCTTCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTTTCCGACCTACGGTTATGTTCCGTTTGt > 2:4028907/1‑149 (MQ=255) ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg > 1:2620188/1‑149 (MQ=255) ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTGTGTAg > 1:2465028/1‑149 (MQ=255) gcgggAGGCGGCGTGAACGCCCTATCCAGCATCCGGTTATGTTCCGG‑TTTGTTGGCCTGATAAGACGCACAGCGTCGCAACTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCt < 1:2288741/146‑1 (MQ=14) tGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg > 2:1909500/1‑149 (MQ=255) gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc > 1:1156323/1‑149 (MQ=255) gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTGTGCCGGTTGTAGGCCTGATAAGACGcac > 2:2272849/1‑149 (MQ=255) gTGAACGCCATATCCAGCCTAGGTTTTTGTTCGGT‑TTTGTCGGCCTTATACGCCGCACCGCGTCGCATCAGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac < 1:322907/149‑1 (MQ=14) tGACCGCCCTACCCCGCCTTGGGTTTTTTTCGGG‑TTTGTCGGCCTTATATGACGCCCTGCGTCGAACCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 1:2855959/149‑1 (MQ=14) tGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGGTATGTTCCGTTTGTAGGCCGGATAAGACGcaca > 2:1922159/1‑149 (MQ=255) aaCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTCTCCGACCTACGGGTATGTTCCGTGTGGAGGCCGGAGAAGACGCCCAGc > 2:2849321/1‑149 (MQ=14) aaCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGc > 2:787853/1‑149 (MQ=255) aCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCg > 1:880985/1‑149 (MQ=255) ctccgtATCCCGCCTAGGGTTTTGTTGGGG‑TTTGTTGGCATTATACGACGCACCGCGTCGCATCTGGCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGt < 1:2418089/144‑1 (MQ=14) gCCCTATCCAGCCTACGTTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc < 2:3794456/149‑1 (MQ=255) gCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc > 2:4287454/1‑149 (MQ=255) gCCATACCCAGCCTCCGGTTTTGTTCGGG‑TTTGTAGGCCTTATAAGCCGCACCGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc < 2:2109040/149‑1 (MQ=14) ccTATCCCGCCTCGGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGc < 2:498919/149‑1 (MQ=255) cTATCCAGCCTACGGGTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa > 2:666744/1‑149 (MQ=255) tacccAGCCT‑CGGTTTTTTTGCGGTTTTGTTGCCCTTAAAAGACGAACCGCGTCGCATCTGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt < 1:1709586/146‑1 (MQ=11) aTCCAGCCTTGGGTTTTGTTCCGG‑TTTGTCGGCCTGATAAGTCCCTCAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 2:4572698/149‑1 (MQ=14) aTCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc > 2:2252940/1‑149 (MQ=255) aTCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc > 1:641634/1‑149 (MQ=255) ccAGCCTAGGGTTATGTTCGGT‑TTTTTAGGCCTGATATGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:3244841/149‑1 (MQ=11) ccAGCCTACGGTTATTTTCCGG‑TTTGTAGGCCTGATACGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:752284/149‑1 (MQ=255) aGCCTACGTTTATGTACCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc < 2:3990440/149‑1 (MQ=255) aCGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTCTAGGCCTGATAAGACGCACAGAGTCGCATCAGGCAAccg > 2:3500510/1‑147 (MQ=255) ggTTTTGTTCGGT‑TTTGTGGGCCTTATATGCCGCACTGGTGGGCTTCTGGCAAGGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCt < 2:2948444/149‑1 (MQ=11) ttCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 2:2332582/1‑149 (MQ=35) | TGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCG > CP009273/3385332‑3385627 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |