| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,518 | G→C | 6.4% | intergenic (‑131/+299) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,518 | 0 | G | C | 6.4% | 653.7 / 3.8 | 207 | intergenic (‑131/+299) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base G (129/62); new base C (2/13); total (131/76) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.98e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 211 total aligned reads displayed.
TACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTT > CP009273/3385370‑3385665 | tACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg < 1:1766513/149‑1 (MQ=255) cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa < 1:306765/149‑1 (MQ=255) aGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCTCATCAGGCacc > 2:4098499/1‑147 (MQ=255) aGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc > 1:1348732/1‑149 (MQ=255) gTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgg > 2:4076504/1‑149 (MQ=255) gTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgg > 2:1911760/1‑149 (MQ=255) gTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGAAAAGCGTCTCATCAGGCAACgc > 2:3140488/1‑148 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:1047318/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 2:2667710/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:4171864/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:4171779/1‑149 (MQ=255) gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCtctc > 1:2105087/1‑149 (MQ=255) aCTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCg > 1:2596489/1‑149 (MQ=255) aTCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATg > 2:425337/1‑149 (MQ=255) tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCTGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCCG‑TAAGAAGGCCAGAAAAGACTCAAATCTACGCAACATCCAACGCCTCTCGCAtcc > 1:3268765/1‑147 (MQ=21) ttttGCTACTCGTTAGTTACTGCTGTCGTGGATTTTTTACGGCTGCGGGTTGGGGCGTGAACGCCCTATCCAGCCTACGTTTTTGTTCCGT‑TTTGTAGGCCTGAAACGCCGCACAGCGTCGCATCTGGCAACGGCTGTCGGATgcggcg < 2:4439620/149‑1 (MQ=37) tttGCTACTGGTTTGTTACTGCTGTAGAGTTTTTTTTCCGGCTGCCGGAGGGGGCGTCAACGCCCTCTCCAGCCTAGGGTTTTGTTCGGG‑TTTGTCGGCCTTATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt < 2:132448/149‑1 (MQ=18) tttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:4517012/1‑149 (MQ=255) tttGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGt > 1:4517035/1‑149 (MQ=255) cTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAAc > 1:4072690/1‑149 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACg > 1:2735095/1‑149 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACg > 1:929798/1‑149 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACg > 1:3167162/1‑149 (MQ=255) aCTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGc > 1:4248827/1‑149 (MQ=255) tCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCt > 1:3406269/1‑149 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAATACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACTCCTAATCCg > 1:2193636/1‑149 (MQ=255) taCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTATCCGAc > 1:2531302/1‑149 (MQ=255) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc > 1:360730/1‑149 (MQ=255) ctgctgTCGCGGTTTTTTTCCGGCTGCGGGAGGCGGCGTGACCGCCCTATCCAGCCTACGGTTTTGTTCCGG‑TTTGTCGGCCTTATACGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:2780443/149‑1 (MQ=17) ctgctgTAGTGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:2579971/149‑1 (MQ=255) cTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCt < 2:2934937/149‑1 (MQ=255) gCAGTCGTGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 2:2111220/149‑1 (MQ=255) gCAGTAGTGTATTTTTTACGGCTGCCGTTTGCGGCTTGAACGCCCTATCCAGCCTACGTTTATGTTCCGG‑TTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 2:1129113/149‑1 (MQ=18) gCAGTAGCGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTAGGGTTATGTTCCGT‑TTTGTAGGCCTGATAAGACGCACTGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 2:3979712/149‑1 (MQ=255) gCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc > 1:2385463/1‑149 (MQ=255) atagGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGG‑TTTGTAGGCCTGATACGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa < 2:2269540/147‑1 (MQ=255) gagGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCATATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt < 2:3379504/149‑1 (MQ=255) ggATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAACCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAATACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTGAACGCCATATCCGACCTACGGTTATGt > 1:1569380/1‑149 (MQ=14) gATTTTTTCCGGCTGCCGGTTGGGGCGTGAACGCCCTATCCTGCCTCCGGTTTTTTTCTGG‑TTTGTAGGCCTGTTAATTCGAACAGCGTCGCTTCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt < 2:2287317/149‑1 (MQ=17) aTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCAGCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc > 1:2939636/1‑149 (MQ=255) ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGGCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTca > 1:459231/1‑148 (MQ=255) ttttcgggcggcCGGTGGCGGCGTGAACGCCCTATCCAGCCTACGTTTTTGTTCGGG‑TTTGTCGGCCTGATAACACGCACCGCGTCGCATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt < 1:3780274/143‑1 (MQ=17) ttccggcggCCGGATGCGGCGTGACCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTCGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGttt < 2:2036182/146‑1 (MQ=17) ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg > 1:328728/1‑149 (MQ=255) ggCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTGTGTAg > 1:2465028/1‑149 (MQ=255) cTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTTGGc > 2:286205/1‑149 (MQ=255) tGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCACCGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGTTGTAGGCCTTATAAg > 2:1909479/1‑149 (MQ=255) gcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGc > 1:1156323/1‑149 (MQ=255) gTGAACGCCCTATCCAGCCTAGGGTTATGTTCGGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac < 2:3900626/149‑1 (MQ=255) gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac > 1:2430515/1‑149 (MQ=255) ttaaCGCCCTATCCAGCCTAGGTTTATGTTCGGG‑TTTTTCGGCCTTAAAAGACCCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 1:1359471/147‑1 (MQ=14) tGACCGCCCTACCCCGCCTTGGGTTTTTTTCGGG‑TTTGTCGGCCTTATATGACGCCCTGCGTCGAACCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 1:2855959/149‑1 (MQ=14) tGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca > 2:401106/1‑149 (MQ=255) tGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGGTATGTTCCGTTTGTAGGCCGGATAAGACGcaca > 2:1922159/1‑149 (MQ=255) aaCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGc > 2:787853/1‑149 (MQ=255) aCGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCg > 1:885333/1‑149 (MQ=255) cGCCCTATCCAGCCTTGGTTTTTGTTCGGT‑TTTTTAGGCCTGATACGACGCACAGCGTCGCAAATGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGt < 1:2418060/149‑1 (MQ=14) gCCCTATCCAGCCTACGTTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc < 2:3794456/149‑1 (MQ=255) gCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTCGGCCTGATAAGACGCACCGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc < 2:3794319/149‑1 (MQ=255) gCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc > 2:4287196/1‑149 (MQ=255) gCCATACCCAGCCTCCGGTTTTGTTCGGG‑TTTGTAGGCCTTATAAGCCGCACCGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc < 2:2109040/149‑1 (MQ=14) cccTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:3431900/1‑149 (MQ=255) cgtATCCTGCCTTGGGTTTTGTCCCGG‑TTTTTTGGCCTGATAAGACCCACCGGGTCGCATCATGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGc < 2:498953/147‑1 (MQ=14) cTATCCAGCCTACGGGTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa > 2:666744/1‑149 (MQ=255) tacccAGCCT‑CGGTTTTTTTGCGGTTTTGTTGCCCTTAAAAGACGAACCGCGTCGCATCTGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt < 1:1709586/146‑1 (MQ=11) acccAGCCTCGGTTTTTGTTCGGT‑TTTGTCGGCCTGATAAGACGCACCGCGTCGCATCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 1:491772/147‑1 (MQ=11) aTCCAGCCTTGGGTTTTGTTCCGG‑TTTGTCGGCCTGATAAGTCCCTCAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 2:4572698/149‑1 (MQ=14) aTCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc > 2:2252940/1‑149 (MQ=255) ccAGCCTACGGTTATTTTCCGG‑TTTGTAGGCCTGATACGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:752284/149‑1 (MQ=255) aGCCTACGTTTATGTACCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc < 2:3990440/149‑1 (MQ=255) aGCCTACGGCCATGTACCGG‑TTTGTCGGCCAGATAAGCCGCACAGCGTCGCAGCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc < 2:1023580/149‑1 (MQ=11) cTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc > 1:2655232/1‑149 (MQ=37) aCGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAGGCGGCGTAAACGCCGTATCCGACCTCCGGTTCTGTTCCGGTTGTAGGCCTGATCAGACGCACAGCGTCGCATCCGGCAACgg > 2:3248830/1‑149 (MQ=11) ggTTTTGTTCGGT‑TTTGTGGGCCTTATATGCCGCACTGGTGGGCTTCTGGCAAGGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCt < 2:2948444/149‑1 (MQ=11) gTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 1:59191/1‑149 (MQ=37) ttATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGc > 2:2839827/1‑149 (MQ=37) ttCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 2:2334016/1‑149 (MQ=35) cGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcg > 1:3360773/1‑149 (MQ=33) tttGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgcggcg > 1:4362249/1‑149 (MQ=32) ccttacaaGACGCCCGGCGTCGCTTCTGGCCCGGGCTGGGGGATGCGGCGTAACCGCCTTAGCCGCCCTCGGGTTTTGTTCGGTTTGTCGGCCTGATAAGCCGCACTGGGTCGCATCCGGCAACGGCTGCCGGATGCGGCGTAAACGcc < 2:3519640/143‑1 (MQ=2) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCGGTTTCTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAGCGCCTTa > 2:497015/1‑149 (MQ=255) gATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTa > 1:2246253/1‑149 (MQ=37) ttacgACGCCCCGCGTCGCATCTGTCAACGGCGGTCGGAGGCGGCGTAACCCCCTTATCCGACGTACGGTTTTGTTCGGTTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTAt < 2:4171864/145‑1 (MQ=11) aaGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCCTATcc > 2:2380179/1‑149 (MQ=17) gACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGa > 1:2978262/1‑149 (MQ=37) gACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGGTTGTAGGCCGGATCAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGCTGCGGCGGAAACGCCGTATCCgc > 1:3075879/1‑148 (MQ=11) cGCACTGCGGCGCATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGTACAGCGTCGCAACAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAcc < 2:2899906/149‑1 (MQ=11) cGCACCGCGCCGCACCTGGAAACGGCTGTCGGAGGCGGCGAAACCCCCTTATCCGACCAACGGTTATGTACCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCCGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGAcc < 2:366607/149‑1 (MQ=11) gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCCACGGCTGCCGGCTGCGGCGTAAACGCCTTAGCCGACCTACGGTTa > 1:8964/1‑149 (MQ=255) gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa > 2:4560775/1‑149 (MQ=37) gTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCGTATCCGACCTCCGGTTa > 1:2300300/1‑149 (MQ=21) tggCATCTGGCAACGGCTGTCGGATGCGGCGTAACCGCCTTATCCGACCTAGGGTTATGTTCCGTTTGTCGGCCTGATACGACGCACAGCGTCGCATCTGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt < 2:706193/147‑1 (MQ=11) tCGCATGTGGAACCGGCTGTCGTATGCGGCTTAAACGCCTTAACCGACCTAGGGTTTTGTTCCTTTTGTCGGCCTGATAAGACCCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt < 2:3268842/149‑1 (MQ=11) tCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCATGCAACGGCTGCCGGATGCGGCGTAAACTCCATATCAGACCTACGGTTAt > 1:2868146/1‑149 (MQ=255) tCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt > 2:1637077/1‑149 (MQ=37) tCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt > 1:662301/1‑149 (MQ=37) gCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt > 1:3217511/1‑149 (MQ=37) aTCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCCTCCGGCAACGGCTGCCGGATGCGGCGTCAACGCCTGATCCGACCTACGGTTATGTTc > 2:1301838/1‑149 (MQ=255) aTCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc > 1:371836/1‑149 (MQ=37) ggCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt > 1:2980395/1‑149 (MQ=40) | TACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTT > CP009273/3385370‑3385665 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |