| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,779,316 | G→T | 6.1% | D233Y (GAT→TAT) ‡ | gpmM → | phosphoglycero mutase III, cofactor‑independent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,779,316 | 0 | G | T | 6.1% | 712.6 / 3.0 | 266 | D233Y (GAT→TAT) ‡ | gpmM | phosphoglycero mutase III, cofactor‑independent |
| Reads supporting (aligned to +/- strand): ref base G (126/109); new base T (3/28); total (129/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.76e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 283 total aligned reads displayed.
CATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCT > CP009273/3779168‑3779463 | tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatgat > 1:4493826/1‑149 (MQ=255) tcatTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatgat < 1:154754/149‑1 (MQ=255) catTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatgatg < 2:1875954/149‑1 (MQ=255) catTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAatgatg > 1:3762899/1‑149 (MQ=255) atTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCGTATGCTCGCGACGAAAattatta > 1:2759513/1‑147 (MQ=255) ttGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGaa < 2:3517061/149‑1 (MQ=255) ggTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTTCAGGCTGCGTATGCTCGCGACGCAAATGATGaaat > 1:1230831/1‑147 (MQ=255) cGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGt < 1:1912366/149‑1 (MQ=255) ttACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGa > 1:397946/1‑149 (MQ=255) ttACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGGTTTCCTGCTTCTTATGCTCGCGACGAAAATGATTAAATCgaga > 1:2327202/1‑149 (MQ=255) tactacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGaa < 1:3840642/149‑1 (MQ=255) actacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGaaa < 2:2329291/149‑1 (MQ=255) ctacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAg < 2:4001859/149‑1 (MQ=255) ctacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAg > 1:4097097/1‑149 (MQ=255) ctacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAg > 1:1503211/1‑149 (MQ=255) tacGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGc > 2:4550022/1‑149 (MQ=255) acGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCg < 2:2903972/149‑1 (MQ=255) cgATGGACCGCGATAACCGTTGGTATCGCGTATAAAAAGCTTATGACCTGCTGACTCGGGCGCTGGGCGAGTTCCTGGCCTATACCGCGTTTGCTGGTTTGCAGGCTGCTTATGCTCGCTACGAAAATGATGAATTCTTGAAAGCGAcc < 2:578515/149‑1 (MQ=255) aTGGACCGCGATAACCGTTGGTATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGTTTTCCTGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTTTGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGt < 2:2110585/149‑1 (MQ=255) aTGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAATCGACCGt > 2:2952131/1‑149 (MQ=255) tGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGtt > 2:2245167/1‑149 (MQ=255) tGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTAGCGACGAAAATGATGAAATCGTGAAAGCGACCGtt > 1:3955714/1‑149 (MQ=255) ggACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCAGCTTAATCACGCGACGAAAAAGAATAAATCGTTAAATCCACCGATa > 1:4584561/1‑149 (MQ=255) gACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATTCTCGCGACGAAAATGATGAATTAGTGAAAGAGACCGTTAt > 1:634867/1‑149 (MQ=255) ccGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATcc > 1:4106012/1‑149 (MQ=255) tAACCGTTGGGATCGCTTATAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGATTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACTAAAATGATGAATTCTTTAAAGCGACCGTTATCCGTGCTg < 2:4321436/149‑1 (MQ=255) aCCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATTCTCGCGACGAAAATGATGAATTCGTGAAAGCGTCCGTTATCCGTGCTGaa > 1:3644539/1‑149 (MQ=255) aCCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTgta > 1:1412133/1‑147 (MQ=255) aCCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGaa > 2:3929156/1‑149 (MQ=255) ccGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTGGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAAATATGAATTCGTGAAAGCGACCGTTATCCGTGCGGAAg > 1:1164535/1‑149 (MQ=255) ttggggATCGCGTAGAAAATGCTTATGACCTGCTGACTCTGGCGCTGGGCGAGTTCCCGCCCGATACCGCCGTTGCTGTTTTGAAGGCGGCTTATGCTCGCGACGAAATTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGt < 2:235392/146‑1 (MQ=255) gTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGt > 2:4103503/1‑149 (MQ=255) gATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATTCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGcc > 1:2709230/1‑149 (MQ=255) gATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGcc > 2:2432074/1‑149 (MQ=255) gTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcgc > 2:3385871/1‑149 (MQ=255) tacaaaaaGCTTATCACCTGCTGACGGTGGCGCCGGGCGCGTCCCAGGCCGATCCCGCCGTGGCTGGTTGGCTGGCTGCTTTTGCTCGCGACCAAAATGTTGATTTGGTTAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGAcgcg < 1:941807/146‑1 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGc > 1:54170/1‑149 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGc > 2:348169/1‑149 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGc > 2:2631188/1‑149 (MQ=255) gAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGc > 1:320222/1‑149 (MQ=255) aaaGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAAt < 2:320222/149‑1 (MQ=255) ggttctGACCTGGGGACTGGGGCGCTGGGCGTGTTCCGGGCGGTTCCCGCGGTTGGTGGTTGGCTGGGGGTTTTGGCTGGCGACGAAATTGATTTATTGGTTACCGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGa < 1:3560412/144‑1 (MQ=255) gCTTATGACCTGCTGACTCGGGCGCTGGGCGAGTTCCTGGCCGATACCGCGGTTGGTGGTTTGCCGGCTGCTTAGGCTCGCGACTAAAATTTTGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGa < 2:1586626/149‑1 (MQ=255) ttattaCCTGCTTACTCGGGCGCTGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCTGGCTGCTTATGCTCGCGACTAAAATGATTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAg < 2:862444/149‑1 (MQ=255) ttATGACCTGCTGACTCGGGCGCTGGGCGTGTTCCCGGCCTATCCCGCCGTTGGTGTTTTGCTGGCTGATTTGGCTCGCTACTAAAATGTTTATTTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAg < 1:4387311/149‑1 (MQ=255) gACCTGGTGACTCTGGCGCTGGGCTTGTTCCAGGCCTATACCGCGTTTGCTGGTTTGATGGTTGCTTATGCTCGCGACTAAAATGATTAATTCTTTAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACgg < 1:728293/149‑1 (MQ=255) gACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACgg > 2:3575493/1‑149 (MQ=255) ctgctgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAATTGATGTATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGa < 2:620069/149‑1 (MQ=255) gtgACTCGGGCGCAGGGCGTGTGCCCGGCCGAAACCGCCTTTGCTGGTTTGCTGGCTGATTTGGCTCGCGACTAAAATTATTAATTCTTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGc < 2:783140/148‑1 (MQ=255) tgACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCGGGTTTGCCGGCGGCGTATGCTCGCGACGAAAATGTTGTATTAGTGAAAGCGACCGTTATCCGTGCTGAAGGGCAGCCCGACGCGGCCATGGAAGACGGCGATGCa > 1:89473/1‑149 (MQ=255) gACTGTGGCGCCGGGCGTGTTCCAGGCCTATACCGCCTTTACTGGTTTGCTGGCTGCTTATGCTCGCGACTAAAATTATTAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCAc < 2:3082680/149‑1 (MQ=255) gACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCAc > 2:2734183/1‑149 (MQ=255) aCTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACt > 2:1822333/1‑149 (MQ=255) tctGGCGCAGGGCGTGTTCCCGGCCTATCCCGCGGTTTATGTTTTTCTGGCTGCTTTTGCTCGCTACTAAAATGTTTAATTGTTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGa < 1:1005597/149‑1 (MQ=255) gggggCGCTGGGGGTTTTCCTGGCCTATACCGCGGGTGGTGTTTGGACGGGTGATTTTGCTGGCGACTAATATGATCATTTCGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGa < 1:423956/146‑1 (MQ=255) gcAGGGCGTGTCCCCGCCCGATACCGCCGTTGGTGTTTTGCAGGCTGATTAGGCTCGCTAATAAATTTATTAATTCGTCAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCa < 1:1955383/149‑1 (MQ=255) cAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTAGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCAt > 2:835860/1‑149 (MQ=255) gCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAAc < 2:3025662/149‑1 (MQ=255) gAGTTCCAGGCCGATACCGCCGTTGCTGGTTTTCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATACGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAAcat > 1:3423784/1‑147 (MQ=255) gTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACTAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc < 2:4388473/149‑1 (MQ=255) gTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGTTGAATTCGTGAAAGCGACCGGTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTcc > 1:1109339/1‑149 (MQ=255) ggCCGATCCCGCGGTTGGTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTg < 2:2449282/149‑1 (MQ=255) ccGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATTCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATACGTGCTGTAGGTCAGCCCGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACATCCGTGCTGAc > 1:1802970/1‑149 (MQ=255) ccGATACCGCCGTTGCGGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGAc < 2:1363072/149‑1 (MQ=255) aCCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcgcgc > 2:274335/1‑149 (MQ=255) gccgTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcgcgcgcg > 2:4458555/1‑149 (MQ=255) gccgTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACcgcgcgcg < 2:371510/149‑1 (MQ=255) tggtGGTTTGCTGGCTGATTATGCTCGCTACTAAAATGATTAATTCGTCAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGaaa < 1:83079/146‑1 (MQ=255) cTGTTTTGCAGGCTGCTTTTGCTCGCGACGAAATTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATc < 1:1451121/149‑1 (MQ=255) tGGTTTGCTGGCTGCTTATGCTCGCGACTAAATTGTTGATTTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCa < 2:196544/149‑1 (MQ=255) tGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCa > 2:651028/1‑149 (MQ=255) gTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACt < 2:4587736/149‑1 (MQ=255) ggCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGTGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCtt > 1:806915/1‑149 (MQ=255) ggCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCtt > 1:2474840/1‑149 (MQ=255) gctgctTATGCTCGCGACTAAAATTATGTATGCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCttt < 1:1682768/149‑1 (MQ=255) ctgctTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGACGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTc > 1:4507883/1‑149 (MQ=255) ctgatTAGGCTCGCTACTAAAATTATGAATTCTTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTc < 2:3090541/149‑1 (MQ=255) tgctTTTGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCg < 1:2274535/149‑1 (MQ=255) gctTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGt > 2:3522988/1‑149 (MQ=255) gctTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGt < 2:4096332/149‑1 (MQ=255) ctTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTg > 1:3687097/1‑149 (MQ=255) ctTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTg > 1:4055695/1‑149 (MQ=255) ttATGCTCGCGACGAAAATGATGAATTCGTGAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGa < 2:3908630/149‑1 (MQ=255) taggcccgcgACGAAAATGATGAATTCGTGAACGCGACCGGTATCCGTGCTGAAGGTCAGCCAGACGCGGCACTGGAAGACGGCGATGCACTGATTTTCATGACCTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGaa < 2:2879766/143‑1 (MQ=255) tATGCTGGCTAGTAAAATTTTGATTTCTTTAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGaa < 1:2124825/149‑1 (MQ=255) tCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTg > 2:3048896/1‑149 (MQ=255) cgcgACGAAAATTATTAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGa < 2:1145229/149‑1 (MQ=255) cgacgaAAATGTTGAATTCGTGAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGAtt < 2:211835/149‑1 (MQ=255) gacgaAAATGTTGAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGAttt < 1:4111804/149‑1 (MQ=255) ccgaAATTGTTGATTTCGTGAACGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTc < 1:85609/148‑1 (MQ=255) acgaAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTc > 1:2722306/1‑149 (MQ=255) ctaaaaTGATTATTTGGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCg < 1:4512053/147‑1 (MQ=255) aaaTTATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg < 2:1255936/149‑1 (MQ=255) aaaTGATGAATTCGTTAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg < 2:2465878/149‑1 (MQ=255) aaaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg > 2:3545054/1‑149 (MQ=255) aaaTGATGAATTCGTCAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATg < 2:4253065/149‑1 (MQ=255) aaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATgg < 2:4493826/149‑1 (MQ=255) aaTGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATgg < 2:1054014/149‑1 (MQ=255) tgatgaATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCt > 2:4050436/1‑149 (MQ=255) tgatgaATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCt > 2:1745715/1‑149 (MQ=255) | CATCATTGGTCGTTACTACGCGATGGACCGCGATAACCGTTGGGATCGCGTAGAAAAAGCTTATGACCTGCTGACTCTGGCGCAGGGCGAGTTCCAGGCCGATACCGCCGTTGCTGGTTTGCAGGCTGCTTATGCTCGCGACGAAAATGATGAATTCGTGAAAGCGACCGTTATCCGTGCTGAAGGTCAGCCAGACGCGGCAATGGAAGACGGCGATGCACTGATTTTCATGAACTTCCGTGCTGACCGCGCGCGTGAAATCACTCGTGCTTTCGTGAACGCTGATTTCGATGGCT > CP009273/3779168‑3779463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |