mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 1606086 = | 261 (1.000) | 4 (0.020) | 4/276 | NT | 1.5% | coding (26/948 nt) | yneF | putative membrane‑bound diguanylate cyclase |
| ? | CP009273 | = 1645805 | NA (NA) | intergenic (+11/‑3) | insD1/intQ | IS2 transposase TnpB;IS, phage, Tn; Transposon‑related functions; extrachromosomal; transposon related/pseudogene, Qin prophage; phage integrase family;Phage or Prophage Related | |||||
| * | ? | CP009273 | = 1463497 | NA (NA) | 4 (0.020) | 4/276 | NT | 1.5% | noncoding (1/1331 nt) | IS2 | repeat region |
| ? | CP009273 | = 1606090 | 256 (0.980) | coding (22/948 nt) | yneF | putative membrane‑bound diguanylate cyclase | |||||
| * | ? | CP009273 | = 1090958 | NA (NA) | 6 (0.020) | 5/276 | NT | 2.9% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | CP009273 | 1427903 = | 200 (0.780) | coding (29/591 nt) | pinR | Rac prophage; putative site‑specific recombinase | |||||
| * | ? | CP009273 | 920401 = | 245 (0.940) | 6 (0.020) | 5/260 | NT | 2.5% | coding (1682/2277 nt) | clpA | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity |
| ? | CP009273 | = 920397 | 240 (0.980) | coding (1678/2277 nt) | clpA | ATPase and specificity subunit of ClpA‑ClpP ATP‑dependent serine protease, chaperone activity | |||||
| * | ? | CP009273 | = 776959 | 176 (0.670) | 3 (0.010) +T |
3/274 | NT | 1.8% | intergenic (+59/‑74) | lysZ/lysQ | tRNA‑Lys/tRNA‑Lys |
| ? | CP009273 | 777228 = | 159 (0.610) | intergenic (+120/‑313) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A | |||||
| * | ? | CP009273 | = 361823 | 242 (0.930) | 4 (0.020) +TTAATTAA |
3/260 | NT | 1.8% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 224 (0.860) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | 89334 = | 253 (0.970) | 12 (0.050) | 5/256 | NT | 4.9% | coding (1435/1767 nt) | ftsI | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) |
| ? | CP009273 | = 89330 | 229 (0.950) | coding (1431/1767 nt) | ftsI | transpeptidase involved in septal peptidoglycan synthesis (penicillin‑binding protein 3) | |||||