| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,370,361:1 | +G | 89.9% | coding (711/759 nt) | menH ← | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,370,361 | 1 | . | G | 89.9% | 1292.6 / 139.6 | 345 | coding (711/759 nt) | menH | 2‑succinyl‑6‑hydroxy‑2, 4‑cyclohexadiene‑1‑carboxylate synthase |
| Reads supporting (aligned to +/- strand): ref base . (24/11); new base G (178/132); total (202/143) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.77e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 353 total aligned reads displayed.
TTTTTCATAACGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTAAGGTTAGCACGTAAATC > CP009273/2370212‑2370504 | ttCATAACGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑tttgtc > 2:2859695/1‑147 (MQ=255) cATAACGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑tttgtccc < 1:3174688/150‑6 (MQ=255) tAACGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGa < 2:729395/150‑1 (MQ=255) tAACGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGa > 1:4276167/1‑150 (MQ=255) tAACGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGa > 2:2597312/1‑150 (MQ=255) aaCGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGAt < 2:4223608/150‑1 (MQ=255) cGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATgc < 2:922596/150‑1 (MQ=255) cGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATgc < 1:5033276/150‑1 (MQ=255) gAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATgcg > 1:1639903/1‑150 (MQ=255) aTGTCCTCGAAACCTTCGGAGCAGTCGTGCCAGTCCCCCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCACGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGcgcg < 2:198054/150‑1 (MQ=255) ccTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTAt > 1:2192232/1‑150 (MQ=255) ccTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTAt > 2:3623442/1‑150 (MQ=255) ccTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTAt < 1:4617688/150‑1 (MQ=255) tCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGTTTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGt < 2:4255717/150‑1 (MQ=255) tCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGt > 1:187726/1‑150 (MQ=255) gAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTcc < 2:2738333/150‑1 (MQ=255) gAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTcc > 2:1080090/1‑150 (MQ=255) gAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTcc > 1:851776/1‑150 (MQ=255) gAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTcc < 1:1301209/150‑1 (MQ=255) gAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTcc > 1:2278023/1‑150 (MQ=255) aaCCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCgg > 2:4168026/1‑150 (MQ=255) ccTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGgcg > 1:5063015/1‑150 (MQ=255) ttCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGcgcg < 2:2247945/150‑1 (MQ=255) cGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGAGTTG‑TCCCGATGCGCGTTATGTCCGGCGCGAg > 2:4699018/1‑150 (MQ=255) cGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAg > 1:4865782/1‑150 (MQ=255) cGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAg < 1:1104521/150‑1 (MQ=255) aGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGAc < 2:4000468/150‑1 (MQ=255) tCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACa < 2:4691846/150‑1 (MQ=255) gTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATg > 2:4802085/1‑150 (MQ=255) tGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATgg < 1:529604/150‑1 (MQ=255) tGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATgg > 1:4138622/1‑150 (MQ=255) cATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAg > 1:2523447/1‑150 (MQ=255) cATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAg < 1:4405721/150‑1 (MQ=255) aTTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGt > 1:4585306/1‑150 (MQ=255) aTTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCACAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGt < 2:3975914/150‑1 (MQ=255) ttCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTc > 2:3319537/1‑150 (MQ=255) ttCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTc < 1:2040935/150‑1 (MQ=255) cAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCgg > 2:4598421/1‑150 (MQ=255) cAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCgg < 1:2752683/150‑1 (MQ=255) ccGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAg < 1:2940343/150‑1 (MQ=255) ggTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGcc < 2:1452778/150‑1 (MQ=255) tGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAg > 1:3731473/1‑150 (MQ=255) aaaGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTccg > 2:1880822/1‑150 (MQ=255) aGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTccgcc < 2:2328884/150‑1 (MQ=255) gCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTccgccg < 2:1557490/150‑1 (MQ=255) gCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTCTGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCcgccgc > 2:4871108/1‑150 (MQ=255) ttGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAg > 1:3722967/1‑150 (MQ=255) gCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAgg < 1:2826563/150‑1 (MQ=255) ttCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGgc > 2:2881793/1‑150 (MQ=255) tcatcaGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGgcg > 1:1295503/1‑150 (MQ=255) caGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGa > 1:3422106/1‑150 (MQ=255) caGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGa < 1:4813726/150‑1 (MQ=255) caGGATAAATCATATTGTGTCCTTAAGTCAGAAACGCTAGATCTGCGCCAGAGTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTGCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGa > 2:4566290/1‑150 (MQ=255) aGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGaa < 1:1401863/150‑1 (MQ=255) gATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGTGCGCGGAAtt < 2:5002770/150‑1 (MQ=255) gATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAAttt < 2:4201697/150‑1 (MQ=255) aTAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCGGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTg > 1:966479/1‑150 (MQ=255) aTAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAAttt < 1:1963346/150‑1 (MQ=255) aaaTCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGc > 1:2420342/1‑150 (MQ=255) aaTCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCt > 1:376911/1‑150 (MQ=255) aaTCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCt < 1:4233903/150‑1 (MQ=255) aTCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTg > 1:3243514/1‑150 (MQ=255) atatTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCa > 1:4487945/1‑150 (MQ=255) atatTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCa > 1:1000374/1‑150 (MQ=255) tatTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCAc < 2:2105823/150‑1 (MQ=255) gtgtCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTc > 2:486176/1‑150 (MQ=255) gtgtCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGAGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATGTGCTGTCACGATc > 1:310134/1‑150 (MQ=255) gtCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTcac > 2:3248648/1‑150 (MQ=255) gtCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTcac < 1:4347931/150‑1 (MQ=255) tCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTcacc < 2:603956/150‑1 (MQ=255) ccTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTcacca > 1:5025920/1‑150 (MQ=255) tttAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACcaca < 1:1558962/150‑1 (MQ=255) tAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACata < 1:4634070/150‑1 (MQ=255) cAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACataaata > 2:4631868/1‑150 (MQ=255) cAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACataaata > 1:4886815/1‑150 (MQ=255) aGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACataaataa > 1:1180627/1‑150 (MQ=255) aaaCGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAAtaataa > 2:245694/1‑150 (MQ=255) aCGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATTCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATaaa > 2:5138522/1‑150 (MQ=255) gCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAAc < 1:1032107/150‑1 (MQ=255) gCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAAc > 1:3914828/1‑150 (MQ=255) aGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCa > 1:2675295/1‑150 (MQ=255) aGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCa > 1:4692177/1‑150 (MQ=255) aTCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCaaa > 2:2515518/1‑150 (MQ=255) tCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAAt < 2:3850895/150‑1 (MQ=255) cTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAAtg > 2:1397255/1‑150 (MQ=255) tGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGACTTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAAtgtg > 2:207823/1‑150 (MQ=255) cgcCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGACTGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACAGACATAATAAAACGCAACTGTGc > 2:4337852/1‑150 (MQ=255) gcCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCg < 2:3196842/150‑1 (MQ=255) gcCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCg < 2:4482943/150‑1 (MQ=255) gcCAGACTTGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCg > 1:4971032/1‑150 (MQ=255) ccAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCggg > 2:1960571/1‑150 (MQ=255) tGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTaa < 2:4363247/150‑1 (MQ=255) tGCGATTACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTaa < 2:345294/150‑1 (MQ=255) ttACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTAAGGTTAg < 1:3860491/150‑1 (MQ=255) tACGCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTAAGGTTAg < 1:720586/150‑1 (MQ=255) gCCAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTAAGGTTAGCAc > 2:2626010/1‑150 (MQ=255) ccAGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAAATAAACGCAAATGTGCGGGCGCTAAGGTTAGCACg > 1:4982660/1‑150 (MQ=255) aGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTAAGGTTAGCACGTa < 2:1821973/150‑1 (MQ=255) aGCGGGA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTAAGGTTAGCACGTa < 2:1640759/150‑1 (MQ=255) gggA‑TTTGTCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTAAGGTTAGCACGTAAAt > 1:3393516/1‑150 (MQ=255) | TTTTTCATAACGAATGTCCTCGAAACCTTCGGAGCAGTCGTGCCATTCAACCGGTGCGTAAAGCATTGCTTCATCAGGATAAATCATATTGTGTCCTTTAGTCAGAAACGCAAGATCTGCGCCAGACTTGCGATTACGCCAGCGGGA‑TTT‑TCCCGATGCGCGTTATGTCCGGCGCGAGGAATGACATGGCAGTCGGCAGCCAGTTCCGCCGCCAGGGCGCGGAATTTGCTGTCACGTTCACCACATAAATAATAAAACGCAAATGTGCGGGCGCTAAGGTTAGCACGTAAATC > CP009273/2370212‑2370504 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |