| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,570,803 | G→A | 7.9% | I159I (ATC→ATT) | hsdS ← | specificity determinant for hsdM and hsdR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,570,803 | 0 | G | A | 7.9% | 992.2 / 53.8 | 279 | I159I (ATC→ATT) | hsdS | specificity determinant for hsdM and hsdR |
| Reads supporting (aligned to +/- strand): ref base G (118/139); new base A (8/14); total (126/153) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 289 total aligned reads displayed.
AATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATAC > CP009273/4570654‑4570952 | aaTTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTggg < 2:453858/150‑1 (MQ=255) ttttCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGAt > 1:3147469/1‑150 (MQ=255) tttCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGAtt < 1:630827/150‑1 (MQ=255) aTTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGtat < 2:2142441/150‑1 (MQ=255) tAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGAGTTGTGGGATTTGCTCAAAACGTGCGTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTGTTGTTCGGCCCGTGGTGGGCTTGGTatat > 2:1636500/1‑150 (MQ=255) aaCTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATAtt > 2:240206/1‑150 (MQ=255) aaCTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGAATTGGTATAtt > 1:4076133/1‑150 (MQ=255) cTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTa < 1:4938154/150‑1 (MQ=255) tGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTat > 1:1966322/1‑150 (MQ=255) cgcCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTatca < 2:3273744/150‑1 (MQ=255) ccccAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTatcaaatc > 2:1000331/1‑150 (MQ=255) cccAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTatcaaatca < 1:3388653/150‑1 (MQ=255) caaaTACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTatat > 2:3931145/3‑138 (MQ=255) cAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTAtcaaatcaaa < 2:780658/150‑1 (MQ=255) tACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGACAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCt > 2:2707369/1‑150 (MQ=255) aCCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCtt < 1:171975/150‑1 (MQ=255) ccGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGAATTGGTATATTTATCAAATCAAAGCTTg < 2:1269423/150‑1 (MQ=255) cTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCg < 1:3540154/150‑1 (MQ=255) aCGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCtt > 2:837444/1‑150 (MQ=255) aCGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGAATTGGTATATTTATCAAATCAAAGCTTGCCGGCtt > 2:2728057/1‑150 (MQ=255) aaaCGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAata < 2:1024947/150‑1 (MQ=255) cGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAAtatta < 1:2390384/150‑1 (MQ=255) gTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAAtattat > 1:4802442/1‑150 (MQ=255) tttCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATattatt > 2:1690056/1‑150 (MQ=255) cAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAat < 2:1343841/150‑1 (MQ=255) tgtgGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCa > 1:4829771/1‑150 (MQ=255) tgGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCAcc > 1:2266605/1‑150 (MQ=255) gggATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACca < 2:2429725/150‑1 (MQ=255) gggATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACca > 1:1107863/1‑150 (MQ=255) gggATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACca < 1:1869414/150‑1 (MQ=255) ggATTTGCTCAGAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACcag > 2:3540014/1‑150 (MQ=255) tttGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACcagcag > 1:2770381/1‑150 (MQ=255) gCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGaaa < 1:838649/150‑1 (MQ=255) gCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGaaa > 1:3675261/1‑150 (MQ=255) tCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGt < 1:1003421/150‑1 (MQ=255) cAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGTTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGtg > 1:767085/1‑150 (MQ=255) cAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGtg < 1:2600687/150‑1 (MQ=255) aaCGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGtgatg < 1:3327201/150‑1 (MQ=255) aaCGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGtgatg < 1:5101054/150‑1 (MQ=255) aaCGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGtgatg > 2:3798539/1‑150 (MQ=255) cTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAAttt > 1:2478314/1‑150 (MQ=255) ggTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGtt > 1:4105127/1‑150 (MQ=255) gTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGttt < 2:4054930/150‑1 (MQ=255) gCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCg < 1:1477491/150‑1 (MQ=255) gCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCg < 1:3841660/150‑1 (MQ=255) tGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGAt < 1:910111/150‑1 (MQ=255) gTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATa > 1:4857918/1‑150 (MQ=255) gTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATa < 1:1443178/150‑1 (MQ=255) tACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAag > 1:762964/1‑150 (MQ=255) aCCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAaga < 1:397696/150‑1 (MQ=255) cagcagCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGAATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGAttt < 2:3612773/150‑1 (MQ=255) gcagcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtg < 2:2878715/150‑1 (MQ=255) gcagcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtg > 1:4675629/1‑150 (MQ=255) gcagcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtg < 2:4839085/150‑1 (MQ=255) cagcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtgt < 1:1620974/150‑1 (MQ=255) agcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtgtg < 2:4486793/150‑1 (MQ=255) agcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtgtg > 1:4485936/1‑150 (MQ=255) agcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtgtg > 2:223522/1‑150 (MQ=255) agcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTtgtg > 2:3458993/1‑150 (MQ=255) gcGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGa < 1:361532/150‑1 (MQ=255) gTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGaaa < 2:4360858/150‑1 (MQ=255) tATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAAt > 1:5119096/1‑150 (MQ=255) cGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAg < 2:2648195/150‑1 (MQ=255) cGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAg > 2:5054639/1‑150 (MQ=255) aGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCa > 1:2122693/1‑150 (MQ=255) ttCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATaaa > 1:295206/1‑150 (MQ=255) ttCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATaaa < 2:4317728/150‑1 (MQ=255) aGCGATGATTTTTTGTTCGGCATGTGGTGGGATTGGTATATTTATCAAATCAAAGCGTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCTATAAAGAGAAAATTTTGTGAAATGAGCAATAAAAcc < 1:657158/150‑1 (MQ=255) aGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAAcc < 2:4880395/150‑1 (MQ=255) cGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAg > 1:4244359/1‑150 (MQ=255) gatgatTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGa > 2:1367540/1‑150 (MQ=255) gatgatTTTTTGTTCGGCAAGTGGTGGAATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGa > 2:193512/1‑150 (MQ=255) gatgatTTTTTGTTCGGCAAGTGGTGGAATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGa > 2:193366/1‑150 (MQ=255) atgatTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGaa < 2:2822903/150‑1 (MQ=255) tgatTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGaaa < 1:2643341/150‑1 (MQ=255) atTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAat > 2:3717871/1‑150 (MQ=255) ttttttGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAata < 1:973458/150‑1 (MQ=255) tttttGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAatat > 1:4144475/1‑150 (MQ=255) tttGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATTAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATaa < 1:3994770/150‑1 (MQ=255) tttGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATaa < 1:1355172/150‑1 (MQ=255) ttCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGttt > 2:473644/1‑150 (MQ=255) ttCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGttt < 2:3579053/150‑1 (MQ=255) cGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGttttt > 1:3479708/1‑150 (MQ=255) cGGCAAGTGGTGGAATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGttttt < 2:1535652/150‑1 (MQ=255) ggCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTc < 2:591606/150‑1 (MQ=255) cAAGTGGTGGAATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAg < 2:3620071/150‑1 (MQ=255) cAAGTGGTGGAATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAg < 2:3682129/150‑1 (MQ=255) aaGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAgg < 1:3919394/150‑1 (MQ=255) aaGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAgg > 1:5050866/1‑150 (MQ=255) aaGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAgg > 2:137171/1‑150 (MQ=255) tggtggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACg > 1:288418/1‑150 (MQ=255) tggtggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACg < 2:2529859/150‑1 (MQ=255) ggtggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAATATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGt > 2:1833495/1‑150 (MQ=255) ggtggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGt > 1:1277383/1‑150 (MQ=255) ggtggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGt < 1:1824653/150‑1 (MQ=255) tggGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTaa > 2:31173/1‑150 (MQ=255) ggATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATa < 1:4404693/150‑1 (MQ=255) ggATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATa < 1:677792/150‑1 (MQ=255) gATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATac > 1:4408412/1‑150 (MQ=255) gATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATac > 1:3078954/1‑150 (MQ=255) | AATTTTCCATTAACTGCGCCCCCCAATACCGCTTGACGAAAACGTTTCAGGATTTGTGGGATTTGCTCAAAACGTGCTTTGGTGCTGTCTACCTGCGCCAGCAGCGTATCGAGTTTTTCAGCGATGATTTTTTGTTCGGCAAGTGGTGGGATTGGTATATTTATCAAATCAAAGCTTGCCGGCTTAATATTATTAATATTTGCACCAGCAGAAAGTGATGAAATTTTGTTTCGATAAAGAGAAGATTTTGTGAAATGAGCAATAAAACCAGAAAATATAAGTTTTTCAGGACGTAATAC > CP009273/4570654‑4570952 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |