Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 566,305 G→A 5.7% intergenic (+421/‑44) ybcK → / → ybcL DLP12 prophage; putative recombinase/inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273566,3050GA 5.7% 1032.4 / 35.7 280intergenic (+421/‑44)ybcK/ybcLDLP12 prophage; putative recombinase/inactive polymorphonuclear leukocyte migration suppressor; DLP12 prophage; secreted protein, UPF0098 family
Reads supporting (aligned to +/- strand):  ref base G (145/118);  new base A (11/5);  total (157/123)
Fisher's exact test for biased strand distribution p-value = 3.14e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.61e-01

Only 100 of 291 total aligned reads displayed.

CCGACTTTCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCAGGTCACTAGTAATGAAATAAAAACAGGAGAGCAACTTA  >  CP009273/566156‑566454
                                                                                                                                                     |                                                                                                                                                     
   aCTTTCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAat                                                                                                                                                    <  2:623408/150‑1 (MQ=255)
    cTTTCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAata                                                                                                                                                   >  1:1656603/1‑150 (MQ=255)
     tttCGTAGGTGTTACTAATAATAAAGCAGCGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAatat                                                                                                                                                  <  2:4127585/150‑1 (MQ=255)
     tttCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGTAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGAAatat                                                                                                                                                  >  2:3888367/1‑150 (MQ=255)
     tttCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAatat                                                                                                                                                  <  2:3818936/150‑1 (MQ=255)
     tttCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAatat                                                                                                                                                  >  2:1434514/1‑150 (MQ=255)
     tttCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAatat                                                                                                                                                  >  1:1764589/1‑150 (MQ=255)
     tttCGTAGGTGTTAATAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTTGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATAGCGCCTTTATGCATAATGAGATAAAGTAatat                                                                                                                                                  >  1:4356176/1‑150 (MQ=255)
      ttCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGTAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATc                                                                                                                                                 <  2:4900316/150‑1 (MQ=255)
      ttCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATc                                                                                                                                                 <  2:786018/150‑1 (MQ=255)
        cGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCaa                                                                                                                                               >  1:2165368/1‑150 (MQ=255)
         gTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCaaa                                                                                                                                              <  2:155285/150‑1 (MQ=255)
         gTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCaaa                                                                                                                                              >  1:390198/1‑150 (MQ=255)
         gTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCaaa                                                                                                                                              >  2:927329/1‑150 (MQ=255)
              tgtTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCaaataaaa                                                                                                                                         >  1:327726/1‑150 (MQ=255)
              tgtTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCaaataaaa                                                                                                                                         >  1:1567751/1‑150 (MQ=255)
                ttACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCaaataaaata                                                                                                                                       <  1:1405251/150‑1 (MQ=255)
                 tACTAATAATAAAGCAGAGTTTTTAGATAGTATAAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAaataaaataa                                                                                                                                      >  1:1233598/1‑150 (MQ=255)
                   cTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGTAAATAATTGGGTTGGGGGTACAATTGTTATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGAAATATCAAATAAAATAACg                                                                                                                                    >  1:2264915/1‑150 (MQ=255)
                   cTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGTAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGAAATATCAAATAAAATAACg                                                                                                                                    >  1:2111276/1‑150 (MQ=255)
                    taataataaAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAATTAAAATAACGa                                                                                                                                   >  1:1820833/1‑150 (MQ=255)
                       taataaAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGTATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAg                                                                                                                                >  2:4538446/1‑150 (MQ=255)
                       taataaAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAg                                                                                                                                <  1:4471162/150‑1 (MQ=255)
                         ataaAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGt                                                                                                                              >  2:4262825/1‑150 (MQ=255)
                         ataaAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGt                                                                                                                              >  2:815426/1‑150 (MQ=255)
                         ataaAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTATGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGt                                                                                                                              >  1:5148064/1‑150 (MQ=255)
                            aaGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCAt                                                                                                                           >  1:3210316/1‑150 (MQ=255)
                             aGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATa                                                                                                                          <  1:4974658/150‑1 (MQ=255)
                               cAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAAc                                                                                                                        >  1:4429149/1‑150 (MQ=255)
                               cAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAAc                                                                                                                        <  2:1502885/150‑1 (MQ=255)
                                agagTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACa                                                                                                                       >  2:859356/1‑150 (MQ=255)
                                agagTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACa                                                                                                                       >  2:4845910/1‑150 (MQ=255)
                                  agTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACaaa                                                                                                                     >  2:1566545/1‑150 (MQ=255)
                                          gATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGtttt                                                                                                             <  1:3162005/150‑1 (MQ=255)
                                            tAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTa                                                                                                           <  1:1306745/150‑1 (MQ=255)
                                                  cAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGaaaa                                                                                                     >  2:2104734/1‑150 (MQ=255)
                                                        gCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTa                                                                                               <  1:2789947/150‑1 (MQ=255)
                                                         cTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTAt                                                                                              >  2:2685363/1‑150 (MQ=255)
                                                          tttGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATc                                                                                             >  1:3716361/1‑150 (MQ=255)
                                                          tttGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATc                                                                                             >  1:2833095/1‑150 (MQ=255)
                                                           ttGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCg                                                                                            >  2:3558084/1‑150 (MQ=255)
                                                            tgtgTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGt                                                                                           >  2:4044090/1‑150 (MQ=255)
                                                              tgtATATTGTGGCAAATAATTGTGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGttt                                                                                         <  2:1061071/150‑1 (MQ=255)
                                                              tgtATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGttt                                                                                         <  2:3850029/150‑1 (MQ=255)
                                                                 atatTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCaa                                                                                      >  2:1848479/1‑150 (MQ=255)
                                                                   atTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACt                                                                                    <  1:4718970/150‑1 (MQ=255)
                                                                     tgtgGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGt                                                                                  <  1:1881537/150‑1 (MQ=255)
                                                                     tgtgGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGt                                                                                  >  1:1343356/1‑150 (MQ=255)
                                                                                atTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCa                                                                       >  1:843243/1‑150 (MQ=255)
                                                                                atTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCa                                                                       <  2:3768553/150‑1 (MQ=255)
                                                                                atTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCa                                                                       >  1:2434517/1‑150 (MQ=255)
                                                                                   gggttgggGGTACAATTGTGATTGCTTGTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATaa                                                                    <  2:195861/150‑1 (MQ=255)
                                                                                    ggttgggGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAAc                                                                   >  2:1588669/1‑150 (MQ=255)
                                                                                    ggttgggGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGAAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAAc                                                                   >  2:3064770/1‑150 (MQ=255)
                                                                                     gttgggGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACa                                                                  <  1:4815888/150‑1 (MQ=255)
                                                                                      ttgggGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACAt                                                                 <  1:3202359/150‑1 (MQ=255)
                                                                                       tgggGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACAtt                                                                <  1:2326479/150‑1 (MQ=255)
                                                                                       tgggGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACAtt                                                                <  2:4956800/150‑1 (MQ=255)
                                                                                         ggggTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACAtttt                                                              <  1:4017000/150‑1 (MQ=255)
                                                                                         ggggTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACAtttt                                                              >  2:5078399/1‑150 (MQ=255)
                                                                                           ggTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCTTTTCAACTGTATTGGCATTCATAACATTTTCt                                                            >  1:1013019/1‑150 (MQ=255)
                                                                                           ggTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCt                                                            <  1:2719793/150‑1 (MQ=255)
                                                                                             tACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGAAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTgc                                                          <  1:745897/150‑1 (MQ=255)
                                                                                                         tGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTgcagc                                              >  2:344544/1‑150 (MQ=255)
                                                                                                         tGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTgcagc                                              >  1:1074743/1‑150 (MQ=255)
                                                                                                            ttttGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCAtt                                           >  2:2289805/1‑150 (MQ=255)
                                                                                                              ttGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTc                                         <  2:2663778/150‑1 (MQ=255)
                                                                                                                gCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtg                                       >  2:3501738‑M2/1‑148 (MQ=255)
                                                                                                                   tGAAGATTGCGCCTTTATGAATAATGAGATAAAGGAATATAAAATAATATAACGATAGTTCATAACAAAGAGGTTTTTATGAAAACTCTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGAGCAGGCTGCAGCATTTCtggat                                    >  2:4860178‑M2/1‑145 (MQ=255)
                                                                                                                   tGAACATTGCGCCTTTATGCATAATGAGATACAGGAATATCAAATAAAATAACGATATGTCATAACAAAGATGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggat                                    >  1:3739601‑M2/1‑145 (MQ=255)
                                                                                                                     aaCATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggattt                                  >  1:3349713‑M2/1‑143 (MQ=255)
                                                                                                                     aaCATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggattt                                  >  1:927329‑M2/1‑143 (MQ=255)
                                                                                                                        aTTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcc                               <  2:2860249‑M2/150‑11 (MQ=255)
                                                                                                                          tGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccc                             <  1:1492438‑M2/150‑13 (MQ=255)
                                                                                                                          tGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccc                             <  1:4242480‑M2/150‑13 (MQ=255)
                                                                                                                            cgcCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgccccta                           <  1:2467355‑M2/150‑15 (MQ=255)
                                                                                                                                tttATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatt                       <  1:1474402‑M2/150‑19 (MQ=255)
                                                                                                                                tttATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatt                       >  2:4593640‑M2/1‑132 (MQ=255)
                                                                                                                                tttATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatt                       >  1:4932868‑M2/1‑132 (MQ=255)
                                                                                                                                   aTGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttcc                    <  2:808294‑M2/150‑22 (MQ=255)
                                                                                                                                      cATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcacctatatttccaga                 <  2:3321985‑M2/150‑25 (MQ=255)
                                                                                                                                        tAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagaca               >  2:2605673‑M2/1‑124 (MQ=255)
                                                                                                                                        tAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagaca               >  2:64527‑M2/1‑124 (MQ=255)
                                                                                                                                           tGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatct            <  1:5058739‑M2/150‑30 (MQ=255)
                                                                                                                                           tGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatct            <  1:3009346‑M2/150‑30 (MQ=255)
                                                                                                                                            gagaTAAAGAAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctg           <  1:3327478‑M2/150‑31 (MQ=255)
                                                                                                                                             agaTAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgt          <  2:3683848‑M2/150‑32 (MQ=255)
                                                                                                                                               aTAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgtta        >  1:4445471‑M2/1‑117 (MQ=255)
                                                                                                                                                tAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttat       >  1:2497055‑M2/1‑116 (MQ=255)
                                                                                                                                                tAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCAGGTCACTAGTAATGAAATAAAAACAGGAGAGCa       >  1:3914855/1‑150 (MQ=255)
                                                                                                                                                 aaaGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatc      <  2:3249368‑M2/150‑36 (MQ=255)
                                                                                                                                                 aaaGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatc      <  2:2144810‑M2/150‑36 (MQ=255)
                                                                                                                                                  aaGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatca     >  1:2009186‑M2/1‑114 (MQ=255)
                                                                                                                                                   aGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatcac    <  2:3157388‑M2/150‑38 (MQ=255)
                                                                                                                                                   aGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatcac    >  2:3368776‑M2/1‑113 (MQ=255)
                                                                                                                                                    ggAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatcact   <  2:1256383‑M2/150‑39 (MQ=255)
                                                                                                                                                    ggAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatcact   <  2:4443480‑M2/150‑39 (MQ=255)
                                                                                                                                                     gAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGTCTGCATCATTTCtggatttgcccctatatttccagacatctgttatcactt  >  2:4356176‑M2/1‑111 (MQ=255)
                                                                                                                                                     gAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatcactt  >  2:1764589‑M2/1‑111 (MQ=255)
                                                                                                                                                     gAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCtggatttgcccctatatttccagacatctgttatcactt  >  1:620105‑M2/1‑111 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CCGACTTTCGTAGGTGTTACTAATAATAAAGCAGAGTTTTTAGATAGTATCAATGTGCTTTGTGTATATTGTGGCAAATAATTGGGTTGGGGGTACAATTGTGATTGCTTTTGCATGAACATTGCGCCTTTATGCATAATGAGATAAAGGAATATCAAATAAAATAACGATAGGTCATAACAAAGAGGTTTTTATGAAAACACTTATCGTTTCAACTGTATTGGCATTCATAACATTTTCTGCGCAGGCTGCAGCATTTCAGGTCACTAGTAATGAAATAAAAACAGGAGAGCAACTTA  >  CP009273/566156‑566454

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: