| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,798,045 | G→T | 5.6% | pseudogene (271/1476 nt) | arpB → | pseudogene, ankyrin repeats |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,798,045 | 0 | G | T | 5.6% | 1218.4 / 27.0 | 304 | pseudogene (271/1476 nt) | arpB | pseudogene, ankyrin repeats |
| Reads supporting (aligned to +/- strand): ref base G (131/155); new base T (12/6); total (143/161) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.42e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 312 total aligned reads displayed.
CATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTG > CP009273/1797896‑1798194 | cATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAgg < 1:1736721/150‑1 (MQ=255) tGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGAtt > 1:4095245/1‑150 (MQ=255) tGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGAtt > 1:1335312/1‑150 (MQ=255) tGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGAtt > 2:1233057/1‑150 (MQ=255) tGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATACATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTTGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGAtt > 2:1328734/1‑150 (MQ=255) agaAATGGAAAAGGCAAAGTCCACCTGATGAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGAtttt < 2:3121796/150‑1 (MQ=255) agaAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGAtttt < 2:4832688/150‑1 (MQ=255) agaAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGAtttt < 2:2573606/150‑1 (MQ=255) aaaTGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTgg < 2:1461003/150‑1 (MQ=255) aTGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCt > 2:1174898/1‑150 (MQ=255) aTGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCt > 1:2000209/1‑150 (MQ=255) tGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCtt > 2:2490587/1‑150 (MQ=255) ggAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTc < 2:4687316/150‑1 (MQ=255) ggAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTc < 2:2137869/150‑1 (MQ=255) gAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCg < 1:2401045/150‑1 (MQ=255) aaaaGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGc > 1:4361322/1‑150 (MQ=255) aGGCACAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCttt < 2:3489790/150‑1 (MQ=255) gCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAg < 2:2054941/150‑1 (MQ=255) cAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGa < 1:1741896/150‑1 (MQ=255) aGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGatat > 1:3829321/1‑150 (MQ=255) aGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGatat > 1:4893486/1‑150 (MQ=255) tGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCtttt < 1:2490587/150‑1 (MQ=255) gATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTg > 2:4922841/1‑150 (MQ=255) gATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTg < 2:2848492/150‑1 (MQ=255) gATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTg < 1:3443589/150‑1 (MQ=255) aTTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGt < 2:1053510/150‑1 (MQ=255) tAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTGCGCTTTAGATATTTTCTTTTGTCg > 2:1392702/1‑150 (MQ=255) aaCATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGaa > 1:1099417/1‑150 (MQ=255) aCATTAATCATCCGTTGAATCCATACAGCAGCAAGTCACATTAGTCCGGGACTCTGAGTTCAGATCATTACTTCGCCATCATCAAGCAGGGAGTCGCGTTATAGCGAGTAATGATTTTGGCTTCGATTTAGATATATTCATTTGTCTAat > 1:2536464/1‑150 (MQ=255) cATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAatg < 1:2587040/150‑1 (MQ=255) tcctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATTTTTTCTTTTGTCGAATGATGGCa < 1:1709042/150‑1 (MQ=255) tcctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCa > 1:1434894/1‑150 (MQ=255) tcctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCa < 1:4818120/150‑1 (MQ=255) tcctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCa > 2:3537910/1‑150 (MQ=255) cctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCaa > 2:19744/1‑150 (MQ=255) cctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCaa < 1:4456777/150‑1 (MQ=255) ctccGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCaaa < 2:4038769/150‑1 (MQ=255) cGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACaa < 2:320500/150‑1 (MQ=255) ttGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATg > 1:1670632/1‑150 (MQ=255) ttGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATg < 2:384418/150‑1 (MQ=255) tGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATgt < 2:2382456/150‑1 (MQ=255) aaTCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATgtca < 2:2998217/150‑1 (MQ=255) aaTCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATgtca > 1:71296/1‑150 (MQ=255) aaTCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATgtca > 2:114704/1‑150 (MQ=255) aTCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATgtcag < 1:549045/150‑1 (MQ=255) aCAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCatat > 1:628065/1‑150 (MQ=255) cagcagCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGTATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATg > 2:586046/1‑150 (MQ=255) agcagcATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGt > 2:4467074/1‑150 (MQ=255) gcagcaTGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTc < 2:3343294/150‑1 (MQ=255) agcaTGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcg < 1:1189425/150‑1 (MQ=255) gcaTGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCcgc > 1:3933012/1‑150 (MQ=255) gTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGAtt > 2:1687715/1‑150 (MQ=255) tCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGAttt < 1:4039506/150‑1 (MQ=255) cTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtata > 2:4051098/1‑150 (MQ=255) ttAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatat > 1:2197324/1‑150 (MQ=255) aGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTtatatat < 1:2803983/150‑1 (MQ=255) tCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAg < 2:2664613/150‑1 (MQ=255) cGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGTATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGAc < 2:4775497/150‑1 (MQ=255) cGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGTATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGAc < 2:4933516/150‑1 (MQ=255) cGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGAc > 1:265576/1‑150 (MQ=255) gtgACGCTGAGTTCAGAGCATTACTTCGACATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATTGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACa < 1:4653622/148‑1 (MQ=255) gggACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACa > 1:2354155/1‑150 (MQ=255) aCGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGTATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAAATATGTCAGTCATATGTCCGCGATTTTATATATAGACAATc < 2:1531894/150‑1 (MQ=255) cgcgGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCa > 1:1890586/1‑150 (MQ=255) cgGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATa > 2:370069/1‑150 (MQ=255) gTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCTAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACttt < 1:183708/150‑1 (MQ=255) gTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACttt < 1:5027064/150‑1 (MQ=255) ttCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGTATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTg > 1:2053516/1‑150 (MQ=255) ttCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTg > 1:140006/1‑150 (MQ=255) cAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGAGATTTTATATATAGACAATCATACTTTGTc < 2:3865432/150‑1 (MQ=255) gagCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAg < 2:685921/150‑1 (MQ=255) gagCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAg < 1:3754784/150‑1 (MQ=255) ttACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAgg < 1:2951558/150‑1 (MQ=255) aCTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCt < 2:1790980/150‑1 (MQ=255) ttCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTAc > 2:390282/1‑150 (MQ=255) tCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACg > 2:2600520/1‑150 (MQ=255) gCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGaa < 1:1858403/150‑1 (MQ=255) ccATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGTATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAAt > 2:41600/1‑150 (MQ=255) cATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATa > 1:4505675/1‑150 (MQ=255) aTCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATaa < 2:2000209/150‑1 (MQ=255) tcctccTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATaaa < 2:3324099/150‑1 (MQ=255) tcctccTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATaaa < 2:1886229/150‑1 (MQ=255) tcctccTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATaaa > 2:670283/1‑150 (MQ=255) tGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagtc < 1:1328636/150‑1 (MQ=255) gCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGcagtca < 1:3349454/150‑1 (MQ=255) gggAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAgtg < 1:635169/150‑1 (MQ=255) aGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTAt < 1:1160351/150‑1 (MQ=255) aGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTAt < 2:2710000/150‑1 (MQ=255) cgcgTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGa > 1:4211236/1‑150 (MQ=255) cgcgTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGa < 2:881165/150‑1 (MQ=255) gcgTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGAc < 1:437131/150‑1 (MQ=255) cgTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGAGATTTTATATATATACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACa > 2:3194182/1‑150 (MQ=255) gTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACaa > 1:1475522/1‑150 (MQ=255) cgAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGAGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACaattaaatt > 1:3525404/1‑150 (MQ=255) aGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTAt > 1:3034484/1‑150 (MQ=255) gTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTAtg < 1:4562098/150‑1 (MQ=255) aGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTAtgttg > 2:33968/1‑150 (MQ=255) aGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTAtgttg > 2:5079064/1‑150 (MQ=255) ggATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTAtgttgt > 2:2283805/1‑150 (MQ=255) gATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTtgtg > 1:4846754/1‑150 (MQ=255) | CATTGAGAAATGGAAAAGGCAAAGTCAACCTGATTAAACATTACTCCTCCGTTGAATCCATACAGCAGCATGTCCCCTTAGTCCGGGACGCGGAGTTCAGAGCATTACTTCGCCATCCTCCTGCAGGGAGTCGCGTTATCGCGAGTAAGGATTTTGGCTTCGCTTTAGATATTTTCTTTTGTCGAATGATGGCAAACAATGTCAGTCATATGTCCGCGATTTTATATATAGACAATCATACTTTGTCAGTAAGGCTACGAATAAAGCAGTCAGTGTATGGACAATTAAATTATGTTGTG > CP009273/1797896‑1798194 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |