Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,879,449 G→T 89.2% S377* (TCA→TAA)  ygcB ← R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,879,4490GT89.2% 787.5 / 84.2 284S377* (TCA→TAA) ygcBR‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity
Reads supporting (aligned to +/- strand):  ref base G (11/20);  new base T (100/152);  total (112/172)
Fisher's exact test for biased strand distribution p-value = 7.01e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 284 total aligned reads displayed.

TGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCAA  >  CP009273/2879302‑2879595
                                                                                                                                                   |                                                                                                                                                  
 gATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAAt                                                                                                                                                 >  2:2805570/1‑150 (MQ=255)
  aTCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAAtt                                                                                                                                                <  1:3937006/150‑1 (MQ=255)
  aTCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAAtt                                                                                                                                                <  2:4606052/150‑1 (MQ=255)
   tCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTg                                                                                                                                               <  1:3843804/150‑1 (MQ=255)
     aaTCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGcc                                                                                                                                             <  2:5030299/150‑1 (MQ=255)
        cGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATg                                                                                                                                          <  1:4207969/150‑1 (MQ=255)
          tGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTACTCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAg                                                                                                                                        >  1:3310380/1‑150 (MQ=255)
          tGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAg                                                                                                                                        <  1:888023/150‑1 (MQ=255)
          tGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAg                                                                                                                                        <  2:2608197/150‑1 (MQ=255)
          tGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAg                                                                                                                                        >  2:1283018/1‑150 (MQ=255)
           gCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGc                                                                                                                                       >  1:4510859/1‑150 (MQ=255)
            cAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCa                                                                                                                                      <  2:1977616/150‑1 (MQ=255)
            cAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCa                                                                                                                                      <  1:2892410/150‑1 (MQ=255)
              aaCGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAg                                                                                                                                    <  1:2640818/150‑1 (MQ=255)
               aCGCCGATTTGCCCAAGTAACCCTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGa                                                                                                                                   <  2:706591/150‑1 (MQ=255)
                 gCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAAt                                                                                                                                 <  1:4083872/150‑1 (MQ=255)
                    gATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAg                                                                                                                              >  1:1484551/1‑150 (MQ=255)
                    gATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAg                                                                                                                              >  1:3428916/1‑150 (MQ=255)
                    gATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAg                                                                                                                              <  2:2840605/150‑1 (MQ=255)
                       ttGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGAtt                                                                                                                           >  1:1746768/1‑150 (MQ=255)
                             aaGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGa                                                                                                                     >  2:1868759/1‑150 (MQ=255)
                              aGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTTAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGAt                                                                                                                    >  1:312040/1‑150 (MQ=255)
                               gAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCGTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATg                                                                                                                   >  1:3671521/1‑150 (MQ=255)
                                aaaCACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGa                                                                                                                  <  1:1044830/150‑1 (MQ=255)
                                 aaCACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGaa                                                                                                                 <  1:2434456/150‑1 (MQ=255)
                                   cacTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGaaaa                                                                                                               >  1:2962194/1‑150 (MQ=255)
                                     cTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATa                                                                                                             <  1:1575197/150‑1 (MQ=255)
                                      tttCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATaa                                                                                                            <  2:5103999/150‑1 (MQ=255)
                                        tCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGt                                                                                                          >  2:416484/1‑150 (MQ=255)
                                         cTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTg                                                                                                         <  2:2012120/150‑1 (MQ=255)
                                         cTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTg                                                                                                         <  1:1796815/150‑1 (MQ=255)
                                           tATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGgc                                                                                                       >  2:1569738/1‑150 (MQ=255)
                                               gCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGgctcgc                                                                                                   >  2:2525213/1‑150 (MQ=255)
                                                cTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGgctcgcg                                                                                                  >  1:1609558/1‑150 (MQ=255)
                                                   tgtgACAACCACTGACAACACTGAACCCACGATTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGgctcgcgctc                                                                                               <  1:3890287/150‑1 (MQ=255)
                                                      gACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGcgctcgct                                                                                            <  1:446206/150‑1 (MQ=255)
                                                       aCAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCtt                                                                                           >  2:4554665/1‑150 (MQ=255)
                                                       aCAACCACTGACAACACTGAACCCACGCGTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCtt                                                                                           <  2:3220628/150‑1 (MQ=255)
                                                        cAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTc                                                                                          <  1:1957417/150‑1 (MQ=255)
                                                          aCCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCa                                                                                        >  1:790560/1‑150 (MQ=255)
                                                          aCCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCa                                                                                        <  2:556246/150‑1 (MQ=255)
                                                           ccACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCAt                                                                                       >  1:2817963/1‑150 (MQ=255)
                                                            cACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCAtt                                                                                      <  2:3806589/150‑1 (MQ=255)
                                                            cACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCAtt                                                                                      >  2:1372298/1‑150 (MQ=255)
                                                               tGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTACTCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATtctc                                                                                   >  1:5071711/1‑150 (MQ=255)
                                                                gACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCg                                                                                  >  1:2226740/1‑150 (MQ=255)
                                                                 acaacaCTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGt                                                                                 <  2:263616/150‑1 (MQ=255)
                                                                   aacaCTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTaa                                                                               <  2:1475963/150‑1 (MQ=255)
                                                                    acacTGCCCCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGAGTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAag                                                                              <  1:3093148/150‑1 (MQ=255)
                                                                        tGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcata                                                                          >  2:942734/1‑150 (MQ=255)
                                                                        tGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcata                                                                          >  1:2801336/1‑150 (MQ=255)
                                                                         gAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcatag                                                                         <  2:804434/150‑1 (MQ=255)
                                                                         gAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcatag                                                                         <  2:2314229/150‑1 (MQ=255)
                                                                           aCCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcatagca                                                                       <  1:3294836/150‑1 (MQ=255)
                                                                            cccACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcatagcat                                                                      >  1:56498/1‑150 (MQ=255)
                                                                             ccACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCAtt                                                                     >  2:4193597/1‑150 (MQ=255)
                                                                             ccACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCAtt                                                                     <  1:265857/150‑1 (MQ=255)
                                                                              cACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTc                                                                    <  1:347184/150‑1 (MQ=255)
                                                                                  cttcttcttGCCCCTGGTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCgg                                                                >  2:1989287/1‑150 (MQ=255)
                                                                                     cttcttGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAg                                                             >  2:3366530/1‑150 (MQ=255)
                                                                                     cttcttGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAg                                                             <  1:4370061/150‑1 (MQ=255)
                                                                                      ttcttGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGc                                                            >  1:4609898/1‑150 (MQ=255)
                                                                                        cttGCCCCTGTTCTGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCTGTAGCtt                                                          <  2:3489429/150‑1 (MQ=255)
                                                                                        cttGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCtt                                                          <  2:2430475/150‑1 (MQ=255)
                                                                                         ttGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTtg                                                         >  1:1260254/1‑150 (MQ=255)
                                                                                            ccccTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTgtgt                                                      <  2:2080922/150‑1 (MQ=255)
                                                                                             cccTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGtt                                                     <  2:388007/150‑1 (MQ=255)
                                                                                                tGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTggg                                                  >  1:4765288/1‑150 (MQ=255)
                                                                                                tGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTggg                                                  >  1:2217487/1‑150 (MQ=255)
                                                                                                 gTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGa                                                 <  2:1752040/150‑1 (MQ=255)
                                                                                                 gTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGa                                                 <  1:4386150/150‑1 (MQ=255)
                                                                                                 gTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGa                                                 <  2:2754381/150‑1 (MQ=255)
                                                                                                  ttCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAg                                                <  2:3113435/150‑1 (MQ=255)
                                                                                                   tCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAgg                                               >  1:845823/1‑150 (MQ=255)
                                                                                                    cAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAggg                                              <  2:4482749/150‑1 (MQ=255)
                                                                                                    cAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAAACGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCATCCAATCTCGAAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAggg                                              >  2:1440580/1‑150 (MQ=255)
                                                                                                     aGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGc                                             >  1:2561068/1‑150 (MQ=255)
                                                                                                     aGTAATCGCGCGTGATTTTAGTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGc                                             <  1:4915083/150‑1 (MQ=255)
                                                                                                       tAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCaa                                           >  2:2184375/1‑150 (MQ=255)
                                                                                                       tAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCaa                                           >  1:2022857/1‑150 (MQ=255)
                                                                                                              gcgTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAac                                    >  2:4262078/1‑150 (MQ=255)
                                                                                                                gTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAacac                                  <  1:3399331/150‑1 (MQ=255)
                                                                                                                  gATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTa                                <  1:320126/150‑1 (MQ=255)
                                                                                                                  gATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTa                                >  2:4437085/1‑150 (MQ=255)
                                                                                                                   aTTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTAt                               <  2:2492391/150‑1 (MQ=255)
                                                                                                                   aTTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTAt                               <  2:1094248/150‑1 (MQ=255)
                                                                                                                        attgattgAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCa                          >  1:193628/1‑150 (MQ=255)
                                                                                                                         ttgattgaAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCaa                         >  1:1190425/1‑150 (MQ=255)
                                                                                                                         ttgattgaAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCaa                         <  1:4307817/150‑1 (MQ=255)
                                                                                                                                aaaGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATttgttg                  <  2:3955962/150‑1 (MQ=255)
                                                                                                                                aaaGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATttgttg                  >  2:903037/1‑150 (MQ=255)
                                                                                                                                 aaGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGa                 <  2:3572893/150‑1 (MQ=255)
                                                                                                                                  agagGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGAt                <  2:56498/150‑1 (MQ=255)
                                                                                                                                   gagGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATc               >  1:4642236/1‑150 (MQ=255)
                                                                                                                                    agGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCa              <  2:4945966/150‑1 (MQ=255)
                                                                                                                                    agGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCa              >  2:592783/1‑150 (MQ=255)
                                                                                                                                        ggtTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATaa          >  1:3579439/1‑150 (MQ=255)
                                                                                                                                          ttAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGt        <  1:4113189/150‑1 (MQ=255)
                                                                                                                                               ccGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCa   <  1:2104053/150‑1 (MQ=255)
                                                                                                                                               ccGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCa   <  1:371015/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
TGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCAA  >  CP009273/2879302‑2879595

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: