| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,498,239 | A→C | 11.2% | intergenic (+97/+55) | frlR → / ← yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,498,239 | 0 | A | C | 11.2% | 530.4 / 24.3 | 236 | intergenic (+97/+55) | frlR/yhfS | putative DNA‑binding transcriptional regulator/FNR‑regulated pyridoxal phosphate‑dependent aminotransferase family protein |
| Reads supporting (aligned to +/- strand): ref base A (96/109); new base C (28/3); total (124/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.40e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 245 total aligned reads displayed.
CTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTGTG > CP009273/3498091‑3498388 | cttctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTGCCCACCACCAAAACCGCTCCCCaa > 1:2257048/1‑150 (MQ=38) ttctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAAACCTATCCCCcaa > 2:1933394/1‑150 (MQ=255) tctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAg < 2:95210/150‑1 (MQ=255) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAgg < 1:3586949/150‑1 (MQ=255) ctGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAACCCACACCCCAAAgg > 1:1263434/1‑150 (MQ=255) tGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTCGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGGTGAATTTTACATCCCGTACGTTCCCCGCACCCTAACCCTCTCCCCCAAggg > 2:4182957/1‑150 (MQ=255) tGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAggg < 1:3907031/150‑1 (MQ=255) ccGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGc < 1:4575125/150‑1 (MQ=255) ccAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAggg > 2:4622407/1‑150 (MQ=255) cAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAACCCACTCCCCAAAAGGGCGAgggg > 1:2494897/1‑150 (MQ=255) aaTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCGCACCCCCAAGGGGCCAGGGGa > 1:2982898/1‑150 (MQ=39) aTCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAggggcc > 2:3849333/1‑148 (MQ=255) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTGCCCAAACCCAAACACACTCCCCCCATGGGGGGGGGGGCCgg > 1:103408/1‑149 (MQ=37) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCCAACCCACACCCCACAAGGGCGCGGGGccccg > 1:3045958/1‑148 (MQ=38) gCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCACCTCAACCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGt > 2:795917/1‑150 (MQ=255) aTCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAAACCACTCCCCCAAGGGGCGAGGGGACCGTTc > 2:4278520/1‑150 (MQ=255) aTCACCTTAACTATTGATAATAAAAGACAATAACCGAAGGCCGGATAAGATCCGCCAGCATCGCATCCGGCGATGCTGGCGCGGTGAATTTTACATCCCGTACGTTCCCCACACCCGAACCCCCACCCCCAACGGGCGGGGGCAccccac > 2:2651611/1‑146 (MQ=255) ccTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTa < 1:1408560/150‑1 (MQ=255) ccTTAACTATTGATAATAAAAGACATGAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTa < 1:4022864/150‑1 (MQ=255) cTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCACACCCAAACCCACACCCCAAAGGGGCGAGGGGCCCGGTCAGTAc > 1:3745479/1‑150 (MQ=38) aaCTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGa < 1:2544571/150‑1 (MQ=255) acgaTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGaa < 2:5100682/147‑1 (MQ=255) tATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAtt < 1:1249151/150‑1 (MQ=255) aTTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAttt < 2:3891354/150‑1 (MQ=255) taataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTACCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑tt < 2:2426511/150‑1 (MQ=255) taataaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTCTCCCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGA‑tt < 2:5054978/150‑1 (MQ=255) taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGAc > 2:662428/1‑150 (MQ=255) taaAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCCCCCAAACCCACACCCCAAACGGGCGGGGGGCCCGGTCACAACCGAAATTAGC‑ttttc > 2:1372457/1‑147 (MQ=25) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGCCGGTg > 2:2738077/1‑150 (MQ=255) aGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCTCACCCAAACCCTCAACCCCAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑GTGACGGTg > 2:587811/1‑150 (MQ=39) gACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGc < 2:753886/150‑1 (MQ=255) aCATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCCCACCCAAACCCTCAACCCAAAGGGGCGAGGGGCCCGATAAGTAAGGTATTTAGC‑ATGACGGTTCt > 2:2381608/1‑150 (MQ=37) aCATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCCCACCCAAACCCACAACCCCAAAGGGCGGGGGGCCCGGGGAGTACGGAATTTAGC‑GTGGAGGTGcg > 2:3456663/1‑149 (MQ=25) ttAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCACCCAAACCCACACCCCAAAGGGGCGAGGGGGCCGTTCAGTACGGAATTTAGC‑TTGACGGTGCAATc > 1:3422943/1‑150 (MQ=39) tAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATcc < 2:2946880/150‑1 (MQ=255) aaCCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTGACCCACAACCGAACCCACAACCCCAAGGGGGGAGGGGGCCGGTAAGTACGGCAAGTAGCGTTGA‑GGTGCTaaacc > 1:1169474/1‑146 (MQ=19) gTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCCCCCTAACCCTCTCCCCAAAGGGGCGAGGCGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCAt < 2:3376925/150‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCAtt < 1:2378652/150‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCAtt < 1:2378682/150‑1 (MQ=255) tAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGAAGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAAACCTCACCCCAAAGGGGCCAGGGGCCCGGTCAGTACGGAAATTAGC‑TTGAAGGTGCTATCCAGCaat > 2:861164/1‑148 (MQ=255) ccGGCTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTACCCCTCTCCCCACCGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAAt < 2:4063139/150‑1 (MQ=255) cGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATa < 1:1079510/150‑1 (MQ=255) ggATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATAc < 1:3351466/150‑1 (MQ=255) ggATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATAc < 1:3831323/150‑1 (MQ=255) gATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCGAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAGTTAGC‑ATGACGGTGCTATCCAGCATTAAATACt > 2:289922/1‑150 (MQ=255) aTAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTg < 2:84824/150‑1 (MQ=255) tAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCACCCAAACCCTCACCCCAAAGGGGCGCGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATGAAATACAgg > 2:1152531/1‑150 (MQ=39) aaGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGTGGGGACCGGTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGc > 2:4423993/1‑150 (MQ=255) aaGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGGTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGc < 1:605744/150‑1 (MQ=255) aGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTACCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCa < 2:1026022/150‑1 (MQ=255) gATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTACCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCaa < 2:244290/150‑1 (MQ=255) gATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAACCCTCTCCCCAAAGGGGCGAGGGGACCGGTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCaa > 2:3329827/1‑150 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATa < 1:3596019/150‑1 (MQ=255) tGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCCCACCCAAAACCACACCCCCAACGGGCGAGGGGACCGGTCAGTACGGAAATTAGC‑TTTACCGTGCTAAACCCCAATAAAAACTGGCaaaa > 2:1485138/1‑148 (MQ=255) gcCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTACCCTCACCCGAAACCAAACCCCAAATGGGCGAGGGGGCCGTTCAGTAAGGAATTTATC‑TTTAACGTGCTATACAGCATAAAATTAAGGCAATActc > 2:4432613/1‑150 (MQ=255) aGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCa < 2:3102752/150‑1 (MQ=255) atcgcatcCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCGAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCACTACACTCACGc > 2:2744503/1‑150 (MQ=255) ggCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgc > 2:3172132/1‑150 (MQ=255) ggCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCAAAACCACACCCCAAAGGGGCGAGGGGCCCGTTCAGTACGGAAATTAGC‑TTTACGGTGCTATACAGCATTAAATACTGGCAATAATATCAAGCAAAATACgc > 2:2004864/1‑150 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCgcag < 2:184950/150‑1 (MQ=255) cGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCGCACCCGAACCCGCTCCCCCAAGGGGCGCGGGGACCGGTCAGTACGGCATTTAGC‑GTGACCGGGCGAACCCGCCGTAAATAATGGCAAGACTCACACCCCAAATACgcac > 2:111823/1‑149 (MQ=255) gATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCTCAACCCAAAGGGGCGAGGGGGCCGTTCAGTACGGAATTTAGC‑GTGACGGTGCTAACCAGCAATAAATACTGGCAATAATCACACGCAAAATCCgcagc > 2:2265489/1‑150 (MQ=255) aTGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCACTCCCCCAAGGGGGGGGGGGACCGGTCAGTACGGAATTTATC‑TTTACGGTGCTATCCAGCAATTAATAAGGGCAAAACACTCACGCAAAAACCccagca > 1:3695447/1‑150 (MQ=255) tGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGt < 1:2956505/150‑1 (MQ=255) tGGCGCGTTGAATTTTACATCCCGTACGATCCCCTAACCCAAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAAAATAGA‑TTGTCGGTTCAAAACAGCCATAAATAATGGCAAAACACTCACGCAAAATACGCACCACCGt > 2:3782539/1‑150 (MQ=25) gcgcGTTGAATTTTACATCCCGTACGTTCCCCACACCCAAACCCGCTCCCCCAAGGGGCGAGGGGACCGGTGAGTACGGTATTTAGC‑GTGACGGTGCTATCCAGCAATAAAAACAGGCAAAAATCTCACGCAAAATACGCaccacccact > 2:3508527/1‑146 (MQ=255) tttACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTg < 1:3294618/150‑1 (MQ=255) cATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGAGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGAt > 2:3928389/1‑150 (MQ=255) tACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGtt < 2:926524/150‑1 (MQ=255) aCGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTa < 2:4322616/150‑1 (MQ=255) cGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTaa > 2:1520513/1‑150 (MQ=255) gTTCCCCTCACCCTAACCCTCTCCCCCAAGGGGCGAGGGGACCGTTCAGTCCGGAATTTAGC‑TGGCCGGTGCTATCCAGCATTAAATACTGGCACTACTCTCACGCAAAATCCGCAGCCCCGTCTCTTCACCGCTGCGATTCGGGGTAAt > 2:1665855/1‑150 (MQ=38) gTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGGTAAt > 2:1309227/1‑150 (MQ=255) ccccTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCg < 1:4781839/150‑1 (MQ=255) ccTCACCCTAACCCTCTCCCCAAAGGGGCGCGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGGGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGACTCTTCACCGCTGCGATTCGGGTTAATGCGaa > 1:1939942/1‑150 (MQ=255) ccTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGaa > 1:2941868/1‑150 (MQ=255) cTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAAt > 1:2480148/1‑150 (MQ=255) tCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATc < 1:1738359/150‑1 (MQ=255) cACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCg > 2:4641882/1‑150 (MQ=255) ccTCACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcac < 1:1372457/150‑1 (MQ=255) ccTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcac > 2:1214638/1‑150 (MQ=255) ccTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcac > 1:1658254/1‑150 (MQ=255) ccTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGcac > 1:4016791/1‑150 (MQ=255) tAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGACTTTAGC‑TTGACGGTGCTCTCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGGTAATGCGACTCGcacac > 2:1889315/1‑149 (MQ=255) aaCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAAt > 2:398914/1‑150 (MQ=255) aaCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAAt > 2:1755562/1‑150 (MQ=255) aCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATg < 1:4310351/150‑1 (MQ=255) aCCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATg < 1:1518739/150‑1 (MQ=255) cccTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGt < 2:1808133/150‑1 (MQ=255) ccTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCCTTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACACTGtt > 1:5106829/1‑150 (MQ=255) ccTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt > 1:2640788/1‑150 (MQ=255) ccTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGAAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGtt > 1:4256528/1‑150 (MQ=255) tctcCCCAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCt < 2:3123113/150‑1 (MQ=255) ccccAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAt > 2:2567218/1‑150 (MQ=255) cccAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAtt < 2:2248569/150‑1 (MQ=255) cccAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGAtt < 1:4999224/150‑1 (MQ=255) ccAACGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtg < 1:3964182/150‑1 (MQ=255) ccAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtg < 1:78345/150‑1 (MQ=255) aaaGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACACTGTTCTGATtgtg > 2:4905620/1‑150 (MQ=255) aaaGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATtgtg > 1:4873413/1‑150 (MQ=255) | CTTCTGCCGCGCCAATCGCATCACCTTAACTATTGATAATAAAAGACATTAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATGCTGGCGCGTTGAATTTTACATCCCGTACGTTCCCCTCACCCTAACCCTCTCCCCAAAGGGGCGAGGGGACCGTTCAGTACGGAATTTAGC‑TTGACGGTGCTATCCAGCATTAAATACTGGCAATACTCTCACGCAAAATCCGCAGCACCGTCTCTTCACCGCTGCGATTCGGGTTAATGCGAATCGCACAATGTTCTGATTGTG > CP009273/3498091‑3498388 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |