| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,548,048 | T→A | 11.7% | S535R (AGT→AGA) | malT → | mal regulon transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,548,048 | 0 | T | A | 11.7% | 953.9 / 94.1 | 300 | S535R (AGT→AGA) | malT | mal regulon transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base T (125/140); new base A (17/18); total (142/158) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
Only 100 of 305 total aligned reads displayed.
AGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGGCGCG > CP009273/3547899‑3548197 | gCCGCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTg > 1:1805118/1‑150 (MQ=255) cATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAAt > 1:1881513/1‑150 (MQ=255) gtgGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTg < 2:432037/150‑1 (MQ=255) gCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGttt < 2:3270103/150‑1 (MQ=255) cAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTg < 2:1881728/150‑1 (MQ=255) aaCCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGc < 2:1344844/150‑1 (MQ=255) aCCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGcc < 1:445763/150‑1 (MQ=255) ccTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGccc < 1:2835932/150‑1 (MQ=255) ccTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGccc < 1:890773/150‑1 (MQ=255) cTCGGTGCTGGGTGAAGTGCTGCACTGCCAAGGGGTATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCACAGTGAAATTCTGTTTGCCCa > 1:4612054/1‑150 (MQ=255) tCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCaa > 1:4098300/1‑150 (MQ=255) ggTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAgg > 2:4038535/1‑150 (MQ=255) tGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGt < 2:3776943/150‑1 (MQ=255) tGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGt > 2:3619769/1‑150 (MQ=255) gCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGtt < 1:4130315/150‑1 (MQ=255) gggTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCt < 2:1256892/150‑1 (MQ=255) gTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGc > 1:3408772/1‑150 (MQ=255) gAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCaa < 2:2830127/150‑1 (MQ=255) aGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAAc < 2:1591196/150‑1 (MQ=255) gctgcACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACcgc > 1:4993410/1‑150 (MQ=255) gctgcACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACcgc < 1:3611833/150‑1 (MQ=255) actgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTggg > 1:4017931/1‑150 (MQ=255) ctgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGa > 1:4734995/1‑150 (MQ=255) tgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGaa > 1:1536101/1‑150 (MQ=255) tgcaAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGaa > 1:2449963/1‑150 (MQ=255) caAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAAc > 1:665138/1‑150 (MQ=255) aaGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGc < 1:1183869/150‑1 (MQ=255) gAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGaa < 1:3164594/150‑1 (MQ=255) gAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGaa < 1:2728590/150‑1 (MQ=255) aaTTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGaaa > 2:1767571/1‑150 (MQ=255) aTTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGaaaa > 1:3646049/1‑150 (MQ=255) aTTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGaaaa > 1:1770906/1‑150 (MQ=255) ttGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGaaaaa < 2:3523610/150‑1 (MQ=255) ttGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGaaaaa > 1:5090763/1‑150 (MQ=255) tGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAg > 1:2372235/1‑150 (MQ=255) gACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGc < 1:4042595/150‑1 (MQ=255) cccGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGACAAAGCAt > 2:1382908/1‑150 (MQ=255) cccGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCAt < 2:2575114/150‑1 (MQ=255) cGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTc > 2:1014696/1‑150 (MQ=255) tCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAg > 2:4222568/1‑150 (MQ=255) cTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTg < 2:296625/150‑1 (MQ=255) gcgcTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATc > 2:1421701/1‑150 (MQ=255) cgcTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCa < 1:2233873/150‑1 (MQ=255) cgcTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCa > 1:4265884/1‑150 (MQ=255) tAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACg > 2:5021729/1‑150 (MQ=255) gaaTGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACg < 2:4634353/149‑1 (MQ=255) aaTGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGa > 2:4987468/1‑150 (MQ=255) caAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGGGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCAt > 1:2038973/1‑150 (MQ=255) aaaCCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATc > 2:1834231/1‑150 (MQ=255) aaCCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCt < 1:4276584/150‑1 (MQ=255) cGAACAGATGGCACGCCATCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGa < 1:3309593/150‑1 (MQ=255) aaCAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAAc < 1:1295203/150‑1 (MQ=255) aaCAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAAc > 2:3390936/1‑150 (MQ=255) aCAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACa < 2:823339/150‑1 (MQ=255) aCAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACa < 2:3860152/150‑1 (MQ=255) gATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCt > 2:2443228/1‑150 (MQ=255) gATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCt < 2:1836201/150‑1 (MQ=255) aTGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTg < 1:2341743/150‑1 (MQ=255) ggCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGcc < 2:3706863/150‑1 (MQ=255) cACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCaa < 2:3450512/150‑1 (MQ=255) ccAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCa < 2:2042532/150‑1 (MQ=255) cAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCAt > 2:2170802/1‑150 (MQ=255) aGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATg > 2:3330556/1‑150 (MQ=255) aGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATg > 1:1182218/1‑150 (MQ=255) gCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGa > 2:597011/1‑150 (MQ=255) cACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAg < 1:3047118/150‑1 (MQ=255) cGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGtt > 2:1710107/1‑150 (MQ=255) gATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGttt > 1:485174/1‑150 (MQ=255) gATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGttt > 1:2640183/1‑150 (MQ=255) tGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCt > 1:4782065/1‑150 (MQ=255) tGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCt > 2:4762955/1‑150 (MQ=255) tGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCt < 2:303043/150‑1 (MQ=255) tCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTgg < 1:3070670/150‑1 (MQ=255) cTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGt < 2:1788265/150‑1 (MQ=255) tGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTg < 1:4491220/150‑1 (MQ=255) tGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTg < 2:4591144/150‑1 (MQ=255) tGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTg < 1:1369420/150‑1 (MQ=255) ggCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTgc > 2:2620481/1‑150 (MQ=255) cTACGCTTTGTGGAGTTTAATCCAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCAt > 2:2398754/1‑150 (MQ=255) aCGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTc > 1:3690074/1‑150 (MQ=255) aCGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTc > 1:3476455/1‑150 (MQ=255) aCGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTc < 1:1116180/150‑1 (MQ=255) gCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGt < 1:95255/150‑1 (MQ=255) tttGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTgc < 1:1941548/150‑1 (MQ=255) tttGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTgc < 1:2146912/150‑1 (MQ=255) tgGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAg < 1:3029709/150‑1 (MQ=255) gAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCt < 2:4063244/150‑1 (MQ=255) tttAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGta < 2:5093735/150‑2 (MQ=255) ttAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTa > 1:504602/1‑150 (MQ=255) aTCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATgg > 1:965018/1‑150 (MQ=255) aTCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATgg < 2:3200365/150‑1 (MQ=255) aTCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATgg < 1:3913681/150‑1 (MQ=255) ccAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGc < 1:766786/150‑1 (MQ=255) ccAGCAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGc < 1:3834127/150‑1 (MQ=255) cAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGcc > 1:2321199/1‑150 (MQ=255) cAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGcc > 1:4700996/1‑150 (MQ=255) cAAAGAGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTgg > 2:1693251/1‑150 (MQ=255) tGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCCATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGGcgcg > 2:196932/1‑150 (MQ=255) tGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGGcgcg > 2:4167332/1‑150 (MQ=255) tGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAAGGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGGcgcg < 2:2185935/150‑1 (MQ=255) | AGCCGCATTGTGGCAACCTCGGTGCTGGGTGAAGTGCTGCACTGCAAAGGCGAATTGACCCGCTCACTGGCGCTAATGCAGCAAACCGAACAGATGGCACGCCAGCACGATGTCTGGCACTACGCTTTGTGGAGTTTAATCCAGCAAAGTGAAATTCTGTTTGCCCAAGGGTTCCTGCAAACCGCGTGGGAAACGCAGGAAAAAGCATTCCAGCTGATCAACGAGCAGCATCTGGAACAGCTGCCAATGCATGAGTTTCTGGTGCGCATTCGTGCGCAGCTGTTATGGGCCTGGGCGCG > CP009273/3547899‑3548197 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |