| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 524,334:1 | +T | 100% | pseudogene (239/491 nt) | ybbD → | pseudogene |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 524,334 | 1 | . | T | 85.7% | 719.7 / 140.2 | 238 | pseudogene (239/491 nt) | ybbD | pseudogene |
| Reads supporting (aligned to +/- strand): ref base . (19/15); new base T (122/82); total (141/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch. | |||||||||||
Only 100 of 274 total aligned reads displayed.
TTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATA > CP009273/524185‑524478 | ttatttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGatta < 2:211277/150‑1 (MQ=255) tatttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGatta‑t > 2:615913/1‑150 (MQ=255) tatttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGatta‑t > 2:2598904/1‑150 (MQ=255) atttatACAAAGATGAATCTCTTGTAAGTAAACATTACATATACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGatta‑t‑t < 1:871766/150‑1 (MQ=255) atttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGttta‑t‑t > 1:2614690/1‑150 (MQ=255) atttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGatta‑t‑t > 1:622946/1‑150 (MQ=255) atttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGatta‑t‑t > 1:2897180/1‑150 (MQ=255) tttatACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑t‑tt > 2:4217098/1‑150 (MQ=255) taCAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑t‑tttt‑tt > 1:327767/1‑150 (MQ=255) aCAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑t‑tttt‑ttt < 2:404656/150‑2 (MQ=255) cAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑t‑tttt‑tttc < 2:3075505/150‑3 (MQ=255) cAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACAAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTATCCGCACGTAGCGGTGGATATATCAAAAAACACAAAAGTAGACGATGATTA‑t‑tttt‑ttta > 1:3782841/1‑148 (MQ=255) aGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑t‑tttt‑tttctta < 2:1995049/150‑6 (MQ=255) gATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTAt > 2:912272/1‑150 (MQ=255) gATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTAtt > 2:4175661/1‑150 (MQ=255) gATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTAtt > 2:4175830/1‑150 (MQ=255) tGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTAttt < 1:2186520/150‑1 (MQ=255) tGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTAttt > 2:1135594/1‑150 (MQ=255) aTCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTc < 1:2154389/150‑1 (MQ=255) ctTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTa < 2:1587483/150‑1 (MQ=255) ttGTAATTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTaa < 2:3480561/150‑1 (MQ=255) ttGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTaa < 1:722983/150‑1 (MQ=255) agtaaACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAatg < 2:2220382/150‑1 (MQ=255) taaACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAatga > 2:1335756/1‑150 (MQ=255) aaaCATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAatgat < 2:2238084/150‑1 (MQ=255) aaaCATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAatgat > 2:2853258/1‑150 (MQ=255) aaCATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAatgatg > 2:263043/1‑150 (MQ=255) cATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATggggg > 1:3743001/1‑150 (MQ=255) aTAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGt > 1:3315582/1‑150 (MQ=255) tataTGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGTTGGGGGTAGGttt > 1:4322162/1‑150 (MQ=255) atatGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTaa < 2:1155776/150‑1 (MQ=255) tatGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTaa > 1:2163163/1‑150 (MQ=255) tatGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTaa > 1:2164145/1‑150 (MQ=255) tatGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTaa > 1:2556783/1‑150 (MQ=255) tatGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGAGGAGGGGGGTAGGTTTat > 1:316980/1‑149 (MQ=255) tGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGa > 2:2167629/1‑150 (MQ=255) cAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGaaaa > 2:2774950/1‑150 (MQ=255) cAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGaaaa > 1:2553049/1‑150 (MQ=255) cAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGaaaa > 2:2224364/1‑150 (MQ=255) cAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑TATTTT‑TTCTTATTTTTCCCTAAAAAATGATGATGTTGGTATGTTTAATaaaa > 2:4461423/1‑150 (MQ=255) aaTACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACa > 2:3654936/1‑150 (MQ=255) aTACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACAt > 2:1603251/1‑150 (MQ=255) aCCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACAtt < 1:1626130/150‑1 (MQ=255) cAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGa > 2:324727/1‑150 (MQ=255) cAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGa > 2:2496360/1‑150 (MQ=255) aGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGAc > 1:2832961/1‑150 (MQ=255) aaTGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTg > 2:1805499/1‑150 (MQ=255) atgatgGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGa > 1:1324507/1‑150 (MQ=255) gAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCa < 1:2274567/150‑1 (MQ=255) gAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCa > 2:1465232/1‑150 (MQ=255) tttttACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCATAACAAATGATGATGGGGGTAGGGTTAAGAAAAAATTGACAGTGAGGGCCAggg > 2:2952783/1‑150 (MQ=255) tACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACa > 1:342976/1‑150 (MQ=255) tACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGGTTAAGAAAACCTTGACAGTGAGGGCCAGGGAACa > 2:4410278/1‑150 (MQ=255) aTGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGt > 1:3530496/1‑150 (MQ=255) aTGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGt < 1:263043/150‑1 (MQ=255) gCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGc > 2:2360950/1‑150 (MQ=255) tCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGa > 1:4488221/1‑150 (MQ=255) cAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGaaaa < 1:3613648/150‑1 (MQ=255) aGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAAt < 1:2496360/150‑1 (MQ=255) tttttttCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGAGAGGGCCAGGGAACAAGTGGCGAAAATCGt < 1:242373/150‑1 (MQ=255) ttttttCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTATTATTTTTCCCTAACAAATGATGATGGGGGTTGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTAt < 1:2929425/150‑1 (MQ=255) tttttCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTAt < 1:2132989/150‑1 (MQ=255) ttttCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATc < 2:3293243/150‑1 (MQ=255) ttCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGACCAAGTGGCGAAAATCGTATCaa > 2:879662/1‑150 (MQ=255) cGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGa > 2:297341/1‑150 (MQ=255) cGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGaa < 1:3944299/150‑1 (MQ=255) cGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGa < 2:3743001/150‑1 (MQ=255) tAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATc < 2:1739762/150‑1 (MQ=255) tAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATc < 2:2056114/150‑1 (MQ=255) tAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATc > 1:1489105/1‑150 (MQ=255) aGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGACCAAGTGGCGAAAATCGTATCAAAGAATGATcc > 1:3674487/1‑150 (MQ=255) ggTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGa > 2:3178243/1‑150 (MQ=255) gTGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGAt > 2:1897926/1‑150 (MQ=255) tGGATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATa < 1:1773871/150‑1 (MQ=255) ggATATATCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATAc < 1:1291131/150‑1 (MQ=255) atatatCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaa < 1:537185/150‑1 (MQ=255) atatatCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaa < 1:2822243/150‑1 (MQ=255) atatatCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaaa > 2:1361891/1‑150 (MQ=255) atCAATATACACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACaaaaaa > 1:2241099/1‑150 (MQ=255) tataCACAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAgtgt > 1:3729605/1‑150 (MQ=255) acacAAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTgtggt < 1:932889/150‑1 (MQ=255) acacAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTgtggtg > 2:549711/1‑150 (MQ=255) cacaAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTgtggtg > 1:222117/1‑150 (MQ=255) cacaAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTgtggtg > 1:4541538/1‑150 (MQ=255) acaAATGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGgtgt < 1:1391907/150‑1 (MQ=255) aaaTGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTaa < 2:1127721/150‑1 (MQ=255) aaTGTAGAAGATGATTATT‑TTTT‑TTCTTATCTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTaaa > 2:2678567/1‑150 (MQ=255) aTGTAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAat > 1:794076/1‑150 (MQ=255) tAGAAGATGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATg > 1:3379509/1‑150 (MQ=255) gaagaTGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGt > 1:1097244/1‑150 (MQ=255) gaagaTGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGGGTAAATATGGt > 1:4327307/1‑150 (MQ=255) agaTGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTaa > 1:4017459/1‑150 (MQ=255) agaTGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTaa < 2:1209169/150‑1 (MQ=255) agaTGATTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTaa < 2:1677863/150‑1 (MQ=255) agaTGATTA‑T‑TTTTGTTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTaa < 2:2475389/150‑1 (MQ=255) agaTGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAg > 1:1287001/1‑150 (MQ=255) gatgatTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAg > 1:1028556/1‑150 (MQ=255) atgatTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGa < 2:3379509/150‑1 (MQ=255) atgatTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGAt > 1:4133999/1‑150 (MQ=255) gatTATT‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATa > 1:3244705/1‑150 (MQ=255) | TTATTTATACAAAGATGAATCTCTTGTAAGTAAACATTACATAAACTATATGGCAATACCAGAAAATGATGGAGTTTTTACATGGCTCCCAGATTTTTTTCCGCACGTAGCGGTGGATATATCAATATACACAAATGTAGAAGATGATTA‑T‑TTTT‑TTCTTATTTTTCCCTAACAAATGATGATGGGGGTAGGTTTAAGAAAACATTGACAGTGAGGGCCAGGGAACAAGTGGCGAAAATCGTATCAAAGAATGATCCAGATACAAAAAAAGTGTGGTGTAAATATGGTAAGATA > CP009273/524185‑524478 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |