| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,457,896 | C→A | 42.3% | P206T (CCT→ACT) | gspL → | general secretory pathway component, cryptic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,457,896 | 0 | C | A | 42.3% | 252.2 / 307.6 | 255 | P206T (CCT→ACT) | gspL | general secretory pathway component, cryptic |
| Reads supporting (aligned to +/- strand): ref base C (64/83); new base A (54/54); total (118/137) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.13e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 255 total aligned reads displayed.
TGGCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTTCTCGCCA > CP009273/3457749‑3458043 | tGGCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTTAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATACAGCATACt > 1:2470896/1‑150 (MQ=255)tGGCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACt < 2:41359/150‑1 (MQ=255) ggCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTg > 1:2286851/1‑150 (MQ=255) ggCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTg > 1:2217007/1‑150 (MQ=255) ggCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTg > 1:4528481/1‑150 (MQ=255) cTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGaa < 2:2179830/150‑1 (MQ=255) cATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAAt > 2:699331/1‑150 (MQ=255) aTTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATa > 1:1894907/1‑150 (MQ=255) tCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATAcc < 1:911825/150‑1 (MQ=255) cAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATc < 1:2561380/150‑1 (MQ=255) cAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATc > 1:1660404/1‑150 (MQ=255) cAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATc < 1:3588273/150‑1 (MQ=255) aGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCa < 1:4038590/150‑1 (MQ=255) cGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAg < 2:4046402/150‑1 (MQ=255) cGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAg < 1:1926294/150‑1 (MQ=255) gCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGt < 1:1461824/150‑1 (MQ=255) gCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGGTTGTAt < 2:2337383/150‑1 (MQ=255) ccTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTAtt < 2:1635339/150‑1 (MQ=255) ccTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTAtt < 2:1479578/150‑1 (MQ=255) ccTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTAtt < 2:1634051/150‑1 (MQ=255) cTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTc < 1:4232720/150‑1 (MQ=255) aaCGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTACACACACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGc > 2:2352021/1‑150 (MQ=255) aCGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCg < 2:1651815/150‑1 (MQ=255) cGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGa < 1:3859415/150‑1 (MQ=255) aCTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGatat < 2:3727713/150‑1 (MQ=255) cTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATAtt < 1:284415/150‑1 (MQ=255) cTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATAtt < 1:3194280/150‑1 (MQ=255) cTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATAtt > 1:3291572/1‑150 (MQ=255) gATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCa < 2:3185320/150‑1 (MQ=255) aTGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCAt > 2:2196356/1‑150 (MQ=255) aaCACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTcc > 1:368682/1‑150 (MQ=255) cacTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAg < 2:2105213/150‑1 (MQ=255) acTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAgc < 2:4528481/150‑1 (MQ=255) acTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAgc < 2:2286851/150‑1 (MQ=255) tGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAgcgc > 1:3874394/1‑150 (MQ=255) ggTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCt < 2:2575350/150‑1 (MQ=255) aCAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGa > 2:1422313/1‑150 (MQ=255) gCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACAt < 2:157099/150‑1 (MQ=255) cATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACAtg < 2:2229453/150‑1 (MQ=255) cATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACAtg < 2:3253698/150‑1 (MQ=255) aTCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACAtgc < 2:2689388/150‑1 (MQ=255) cTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACAtgctg > 1:409331/1‑150 (MQ=255) gctgcCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCAt < 1:170972/150‑1 (MQ=255) tgcCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATgg > 2:2935304/1‑150 (MQ=255) gcCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGt > 2:265215/1‑150 (MQ=255) cccAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTa < 1:2329441/150‑1 (MQ=255) ccAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTAt > 1:2126110/1‑150 (MQ=255) ccAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTAt < 2:1298242/150‑1 (MQ=255) cAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTAtt < 1:2245412/150‑1 (MQ=255) aGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTAttt < 1:470523/150‑1 (MQ=255) aGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTAttt > 2:176024/1‑150 (MQ=255) ttCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTc < 2:133252/150‑1 (MQ=255) ttCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGATGCATGGTATTTTTc > 1:3312442/1‑150 (MQ=255) tCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCg > 1:3085127/1‑150 (MQ=255) cTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAAc < 1:3346457/150‑1 (MQ=255) cTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAAc > 1:2969253/1‑150 (MQ=255) tGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACa > 1:3560163/1‑150 (MQ=255) gagaATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAg < 1:1497235/150‑1 (MQ=255) gaATATGCTTTTTTATGTTTTAGTAC‑CTATCGTTGTTTCAGCGGACAATCCACTTATACAGCATACTGATATTCCATCAATGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaa < 2:3859986/150‑1 (MQ=255) aaTATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaa < 2:979999/150‑1 (MQ=255) aaTATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaa < 1:3840400/150‑1 (MQ=255) atatGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaaa > 1:3894444/1‑150 (MQ=255) atatGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaaa > 1:1634355/1‑150 (MQ=255) atatGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGaaaa > 2:3069376/1‑150 (MQ=255) gCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATACAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATACCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGt > 2:235741/1‑150 (MQ=255) tttGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTaa > 1:1195525/1‑150 (MQ=255) tttGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGACATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTaa < 1:754086/150‑1 (MQ=255) tGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGc < 2:1918378/150‑1 (MQ=255) gTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCa > 1:1707040/1‑150 (MQ=255) tATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCaaa < 2:1596837/150‑1 (MQ=255) ggTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCg > 1:3765687/1‑150 (MQ=255) gtgtAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCgg < 2:2059966/150‑1 (MQ=255) tgtAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCggg < 1:3008325/150‑1 (MQ=255) agtaC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGaaa > 1:3992446/1‑150 (MQ=255) taC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAAt < 2:795119/150‑1 (MQ=255) taC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAAt < 2:2815840/150‑1 (MQ=255) c‑cTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATgg < 1:974324/150‑1 (MQ=255) cTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGc > 1:1019205/1‑150 (MQ=255) cGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTTTTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTcgcccg < 1:4371655/150‑1 (MQ=255) tGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCt > 2:3563670/1‑150 (MQ=255) gCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTg < 2:47517/150‑1 (MQ=255) gCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTg > 2:4418810/1‑150 (MQ=255) gCAGCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTg > 2:2416871/1‑150 (MQ=255) gCGGCCAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCa < 2:4463171/150‑1 (MQ=255) cGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAg < 2:337042/150‑1 (MQ=255) gCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTa > 2:4354478/1‑150 (MQ=255) cAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAg > 2:1065646/1‑150 (MQ=255) cAATCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAg < 1:846495/150‑1 (MQ=255) aaTCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGACAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGc > 1:3049013/1‑150 (MQ=255) aTCCACTTATCCAGCATCCTGAAATTCCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCt < 1:4505403/150‑1 (MQ=255) aTCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCt > 2:1381949/1‑150 (MQ=255) aTCCACTTATCCAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCt > 2:188235/1‑150 (MQ=255) cACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGtc < 2:3626417/150‑1 (MQ=255) aCTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGtct > 1:1961437/1‑150 (MQ=255) ttATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCg > 1:2242295/1‑150 (MQ=255) ccAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTtct < 1:4223680/150‑1 (MQ=255) cAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTtctc < 1:2113772/150‑1 (MQ=255) cAGCATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTtctc > 2:2679618/1‑150 (MQ=255) aGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTTCTCg < 1:3082237/150‑1 (MQ=255) cATACTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTTCTCGcc < 1:3404401/150‑1 (MQ=255) | TGGCTCATTCGCAGTGCCGCACATGCCTTCAACGAACTGGATGAACACTGGTTACAGCATCTTGCTGCCCAGTTTCCGCCTGAGAATATGCTTTGTTATGGTGTAGTAC‑CTCACGGCGTTGCAGCGGCCAATCCACTTATCCAGCATCCTGAAATACCATCACTGAGTTTGTATTCTGCCGATATTGCATTCCAGCGCTATGACATGCTGCATGGTATTTTTCGTAAACAGAAAACTGTAAGCAAATCGGGAAAATGGCTCGCCCGCCTGGCAGTAAGCTGTCTCGTTCTCGCCA > CP009273/3457749‑3458043 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |