| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,368,389 | G→T | 11.9% | L125I (CTC→ATC) | ampC ← | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,368,389 | 0 | G | T | 11.9% | 935.5 / 71.5 | 276 | L125I (CTC→ATC) | ampC | penicillin‑binding protein; beta‑lactamase, intrinsically weak |
| Reads supporting (aligned to +/- strand): ref base G (118/125); new base T (11/22); total (129/147) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.39e-01 | |||||||||||
Only 100 of 284 total aligned reads displayed.
GAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAAC > CP009273/4368240‑4368537 | gAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCgag > 2:1119665/1‑150 (MQ=255) aaCAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCgaga > 2:2394487/1‑150 (MQ=255) aCAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGAt < 2:2996278/150‑1 (MQ=255) cAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATg < 1:2975806/150‑1 (MQ=255) aaaCCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGt > 2:1230287/1‑150 (MQ=255) ccGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAAt < 1:2766924/150‑1 (MQ=255) cGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATa > 2:2978224/1‑150 (MQ=255) cGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATa > 1:2519010/1‑150 (MQ=255) aTACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAgt < 1:4143650/150‑1 (MQ=255) tGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGa > 1:3187886/1‑150 (MQ=255) ggAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGAt > 1:746127/1‑150 (MQ=255) ggAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGAt > 1:3025698/1‑150 (MQ=255) gAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGAAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATc < 1:2939344/150‑1 (MQ=255) ttGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCa < 1:3725562/150‑1 (MQ=255) ttGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCa > 2:3995147/1‑150 (MQ=255) ttGGCATACAGACGTTGTGTTCCAGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCa > 2:3161336/1‑150 (MQ=255) tGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCAt > 1:895432/1‑150 (MQ=255) tGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCAt > 2:1573267/1‑150 (MQ=255) gCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTc < 2:277892/150‑1 (MQ=255) cATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTcc < 1:3033687/150‑1 (MQ=255) aTACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCa > 1:2605783/1‑150 (MQ=255) aCAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACt < 1:2093790/150‑1 (MQ=255) cAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTg < 2:105518/150‑1 (MQ=255) cAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTg < 2:1131511/150‑1 (MQ=255) aGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGt < 1:1730550/150‑1 (MQ=255) gACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGtt < 1:1505664/150‑1 (MQ=255) aCGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGTATTTCACCTCATCCGGCACCTTCAATGGCAGGCCGCCATCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGttt < 2:2154863/150‑1 (MQ=255) cGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTa < 1:2539343/150‑1 (MQ=255) cGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTCGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTa > 1:2042344/1‑150 (MQ=255) gTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAg < 2:1844646/150‑1 (MQ=255) ttGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGc < 2:233063/150‑1 (MQ=255) ttGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGc < 1:3516556/150‑1 (MQ=255) gtgtTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCgg < 2:1518325/150‑1 (MQ=255) ttCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTaa > 2:3911182/1‑150 (MQ=255) ttCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTACACTGTTTATCTGTaa > 2:3343385/1‑150 (MQ=255) tCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAg < 2:1203069/150‑1 (MQ=255) ccTGGAGCCCATGAAGGCTGCCAGTTTTGATATAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGTCACCTGCAATGGCAGTCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGt < 1:3243396/150‑1 (MQ=255) cTGGAGCCCATGCAGGCTGCCAGTGTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGtt > 2:3065971/1‑150 (MQ=255) ggAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCa < 2:275389/150‑1 (MQ=255) aGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAgg > 1:616437/1‑150 (MQ=255) gCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGc < 1:4311912/150‑1 (MQ=255) gCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGc < 2:2529904/150‑1 (MQ=255) cATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAg > 2:913961/1‑150 (MQ=255) cATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAg > 2:2270243/1‑150 (MQ=255) aTGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGt < 1:4173796/150‑1 (MQ=255) tGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTa < 1:3845059/150‑1 (MQ=255) cAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTAtt > 2:3639614/1‑150 (MQ=255) aGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCAATCCACTGTTTAGCGGTAAGTTCAGGCCAGTAttt > 1:454443/1‑150 (MQ=255) gCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTttgttg < 2:629399/150‑1 (MQ=255) cAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTtgtg > 2:1937852/1‑150 (MQ=255) cAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTtgtg < 2:4544398/150‑1 (MQ=255) tttGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGAt < 2:2650870/150‑1 (MQ=255) ttGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATc < 1:510887/150‑1 (MQ=255) ttGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATc < 2:3283720/150‑1 (MQ=255) tGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCg < 1:47681/150‑1 (MQ=255) tAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCtt < 2:444131/150‑1 (MQ=255) aGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTa < 2:133923/150‑1 (MQ=255) gAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTaa < 2:2472750/150‑1 (MQ=255) aGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACt < 2:914662/150‑1 (MQ=255) cgcAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTg > 1:3310216/1‑150 (MQ=255) gcagcaAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGa > 1:1171662/1‑150 (MQ=255) gcagcaAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGa > 1:935548/1‑150 (MQ=255) gcagcaAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGa > 1:3328059/1‑150 (MQ=255) cagcaAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGAt < 1:3895973/150‑1 (MQ=255) agcaAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGAtt > 2:4014647/1‑150 (MQ=255) gcaAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGAttt < 2:4204205/150‑1 (MQ=255) aaGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTcc > 2:1890801/1‑150 (MQ=255) cGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTc > 1:1362492/1‑150 (MQ=255) gCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCg < 1:115414/150‑1 (MQ=255) cTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTAGTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGa > 1:4062172/1‑150 (MQ=255) ttGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATGTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAg > 2:1615972/1‑150 (MQ=255) gAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCa > 1:1058196/1‑150 (MQ=255) tttCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGc < 1:3989340/150‑1 (MQ=255) tCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGt > 1:4491260/1‑150 (MQ=255) cACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTATGTTGCGAGATGTAATAGTTTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCTATAGCGTc < 2:3138455/150‑1 (MQ=255) cACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTc > 2:444961/1‑150 (MQ=255) tCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGcca > 1:1403945/1‑150 (MQ=255) cATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGCTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGccac > 1:2283427/1‑150 (MQ=255) aTCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGccacc < 2:782062/150‑1 (MQ=255) tCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGccacca > 2:2923246/1‑150 (MQ=255) tCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGccacca < 1:1475733/150‑1 (MQ=255) cACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCAc < 2:3025698/150‑1 (MQ=255) aCCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACg > 1:3191225/1‑150 (MQ=255) aCCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACg > 1:3191293/1‑150 (MQ=255) tGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCa > 2:1822687/1‑150 (MQ=255) gCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAg < 2:616435/150‑1 (MQ=255) aTGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTaa > 2:3851669/1‑150 (MQ=255) aTGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTaa > 2:3553799/1‑150 (MQ=255) gCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATg < 2:2702834/150‑1 (MQ=255) ccgccAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTg < 1:2812242/150‑1 (MQ=255) gcagTGTAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGAcc < 1:4241082/150‑1 (MQ=255) gcagTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGAcc < 2:1362530/150‑1 (MQ=255) gtgtAGGTTGCGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCTAGCACGCCAGTAAATGTTTTGCTGACCGaa > 1:3430168/1‑150 (MQ=255) tgtAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAAc > 1:2539912/1‑150 (MQ=255) aGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTa > 1:107669/1‑150 (MQ=255) ggTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTaa > 1:2758165/1‑150 (MQ=255) ggTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTaa < 2:4514323/150‑1 (MQ=255) ggTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTaa > 2:1465219/1‑150 (MQ=255) cGATATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCaa < 1:2508602/150‑1 (MQ=255) agaTGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAaac > 2:3754569/1‑150 (MQ=255) | GAACAAACCGATACTGGAGTTGGCATACAGACGTTGTGTTCCTGGAGCCCATGCAGGCTGCCAGTTTTGATAGAAGCGCAGCAAGTCGCTTGAGGATTTCACCTCATCCGGCACCTGCAATGGCAGGCCGCCAGCAGTGTAGGTTGCGAGATGTAATAGTGTGATCCCATTCCACTGTTTAGCGGTAAGTTCAGGCCAGTATTTTGTTGTGGGATCGCTTAACTTGATTTCCCCTCGAGCAATAGCGTCGCCACCAAGCACGCCAGTAAATGTTTTGCTGACCGAACCTAACTCAAAC > CP009273/4368240‑4368537 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |