| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,519,217 | A→T | 51.7% | F282I (TTC→ATC) | sgcC ← | putative PTS system EIIC permease component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,519,217 | 0 | A | T | 51.7% | 29.4 / inf | 267 | F282I (TTC→ATC) | sgcC | putative PTS system EIIC permease component |
| Reads supporting (aligned to +/- strand): ref base A (73/56); new base T (78/60); total (151/116) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.00e-01 | |||||||||||
Only 100 of 270 total aligned reads displayed.
GGTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGC > CP009273/4519070‑4519366 | ggTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAat < 1:1384206/150‑1 (MQ=255) gTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAata > 2:724459/1‑150 (MQ=255) tCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGatatat < 1:3519204/150‑1 (MQ=255) cTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATAtt < 1:614221/150‑1 (MQ=255) tGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATAttt < 1:552271/150‑1 (MQ=255) gCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTc < 1:4070536/150‑1 (MQ=255) aGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTgg > 1:84715/1‑150 (MQ=255) aGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTgg < 2:1713277/150‑1 (MQ=255) aGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTgg < 2:2080918/150‑1 (MQ=255) ggggTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGga < 2:842152/150‑1 (MQ=255) ggggTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGga < 2:842058/150‑1 (MQ=255) ggggTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGga < 2:1940010/150‑1 (MQ=255) gggTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaa > 1:3825314/1‑150 (MQ=255) ggTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaag > 2:942812/1‑150 (MQ=255) ggTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaag > 1:4487548/1‑150 (MQ=255) aaCACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAAc > 2:4489306/1‑150 (MQ=255) acacTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACt > 1:3272860/1‑150 (MQ=255) cacTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGACGAACtt > 2:4228543/1‑150 (MQ=255) cacTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACtt > 2:1470104/1‑150 (MQ=255) tttGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCt > 2:1082773/1‑150 (MQ=255) tttGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCt < 2:3461783/150‑1 (MQ=255) gCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCAcc > 1:3735086/1‑150 (MQ=255) ccGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGt < 2:4373626/150‑1 (MQ=255) ggTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCg > 2:3053111/1‑150 (MQ=255) ggTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCg < 2:1107152/150‑1 (MQ=255) ggTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCg < 2:1922630/150‑1 (MQ=255) ggTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCg < 1:2007716/150‑1 (MQ=255) tAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGga < 2:1987437/150‑1 (MQ=255) aaaTGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGgaga < 1:2593334/150‑1 (MQ=255) aaaTGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGgaga > 1:2239689/1‑150 (MQ=255) aaTGCTGGCCAGTATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATTGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATAAACTTCACGTCCTTTGATATATTTCTGTAAGAACTTTCTTGCACCGTCTGAGAt < 2:3268407/150‑1 (MQ=255) gCCAGAATTAACATACTGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcagc < 2:2491217/150‑1 (MQ=255) cAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGcagcag > 1:2939939/1‑150 (MQ=255) agtaTTAACAGAATGGGTATCAGTAGCAGACCGACAGCAATGGTTGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACTCTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAgg < 1:85157/147‑1 (MQ=255) aGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAgg > 1:243061/1‑150 (MQ=255) aaTTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGcc > 1:2669880/1‑150 (MQ=255) tAACATAATGTGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTTTGCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGCACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTc < 1:4438064/150‑1 (MQ=255) aaCATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGAAGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTca > 1:4476128/1‑150 (MQ=255) aTAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTcaaca > 1:2945142/1‑150 (MQ=255) aTAATGGGAATCAGTAGCAGACCGACAGCAATGGAGGTTGGATGCACCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGCTATATTTCTGGAAGAACTTACTTGCACCGTCGGAGATGGGCAGCAGGCCATcaaca > 2:3892304/1‑150 (MQ=255) tAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTcaacaa > 1:697553/1‑150 (MQ=255) gggTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAg < 1:4370696/150‑1 (MQ=255) ggTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAgg < 2:2434278/150‑1 (MQ=255) ggTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAgg > 2:1656128/1‑150 (MQ=255) tATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCg > 2:3387167/1‑150 (MQ=255) tATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCg > 2:3962917/1‑150 (MQ=255) tATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCg > 2:1609685/1‑150 (MQ=255) tATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCg > 2:3386940/1‑150 (MQ=255) tATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCg > 1:77953/1‑150 (MQ=255) tATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCg < 2:2215025/150‑1 (MQ=255) tCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGa < 2:1897950/150‑1 (MQ=255) cAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGAt > 2:1512073/1‑150 (MQ=255) cAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGAt > 2:56897/1‑150 (MQ=255) aGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATc < 2:4420900/150‑1 (MQ=255) aGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATc < 2:4421655/150‑1 (MQ=255) aGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATc < 2:4047506/150‑1 (MQ=255) aGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATc < 1:1021418/150‑1 (MQ=255) aGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATc < 1:1813936/150‑1 (MQ=255) gTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCa < 2:2172039/150‑1 (MQ=255) aGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATg > 1:1697771/1‑150 (MQ=255) aGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATg > 1:1697775/1‑150 (MQ=255) gCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgc > 2:458047/1‑150 (MQ=255) cAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgcg > 2:3429699/1‑150 (MQ=255) aGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgcgc > 1:3612430/1‑150 (MQ=255) gACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGaa > 2:4341383/1‑150 (MQ=255) cAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGaaca > 2:4193246/1‑150 (MQ=255) aGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGaacaa < 2:2782869/150‑1 (MQ=255) gCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGaacaac > 2:2888191/1‑150 (MQ=255) cAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAacaaca > 2:3863285/1‑150 (MQ=255) aaTGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAacac > 1:1851319/1‑150 (MQ=255) tggtTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGa < 2:2128396/150‑1 (MQ=255) ggtTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGAt > 1:2959756/1‑150 (MQ=255) gtTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGAtt > 2:3993540/1‑150 (MQ=255) tGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGc > 1:2470457/1‑150 (MQ=255) tGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGc > 1:3316625/1‑150 (MQ=255) ggATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGcc < 1:3053111/150‑1 (MQ=255) aTGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGc > 2:2768741/1‑150 (MQ=255) ccccAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAAc < 1:490178/150‑1 (MQ=255) ccAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACgg > 1:2696800/1‑150 (MQ=255) cAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGAGTGCCGCAACGGt > 2:3963174/1‑150 (MQ=255) acaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatcatc > 1:845461/1‑150 (MQ=255) gcagTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGa > 2:2233255/1‑150 (MQ=255) agTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACt > 1:181742/1‑150 (MQ=255) agTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACt > 1:2492859/1‑150 (MQ=255) tATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTgg < 2:1385366/150‑1 (MQ=255) tATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTgg > 1:80966/1‑150 (MQ=255) tCCAGACCGATATACACTTCACGTCCATTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGgcg < 1:3281385/150‑1 (MQ=255) aCCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAAcc > 2:2158650/1‑150 (MQ=255) aCCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAAcc > 2:602346/1‑150 (MQ=255) tataCACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCACCGGTAATCATCAGACTGGCGCAACCTTTaa > 2:3205176/1‑150 (MQ=255) ataCACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTaaa < 2:3740712/150‑1 (MQ=255) cacTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGcc < 1:4157569/150‑1 (MQ=255) ttCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCATACTGGCGCAACCTTTAAAGCCtta > 1:2887315/1‑149 (MQ=255) ttCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTc > 1:1545193/1‑150 (MQ=255) cACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCAc > 1:3854941/1‑150 (MQ=255) tCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgc > 2:1188501/1‑150 (MQ=255) ccTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgcc > 1:1148013/1‑150 (MQ=255) cTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgccg > 2:2720041/1‑150 (MQ=255) ttGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgccgcc < 1:1221085/150‑1 (MQ=255) aaTATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGc > 1:1320080/1‑150 (MQ=255) | GGTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGC > CP009273/4519070‑4519366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |