Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,475,290 C→A 9.7% P122P (CCG→CCT emrY ← putative multidrug efflux system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,475,2900CA 9.7% 731.1 / 31.5 242P122P (CCG→CCTemrYputative multidrug efflux system
Reads supporting (aligned to +/- strand):  ref base C (107/105);  new base A (13/12);  total (120/122)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 251 total aligned reads displayed.

CCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGT  >  CP009273/2475141‑2475439
                                                                                                                                                     |                                                                                                                                                     
ccccAGCTACAGTTATCACAAATATAACCGCCCAAGATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAc                                                                                                                                                       <  1:2500175/150‑1 (MQ=255)
ccccAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAc                                                                                                                                                       >  1:1846044/1‑150 (MQ=255)
  ccAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACgg                                                                                                                                                     <  1:1966594/150‑1 (MQ=255)
  ccAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACgg                                                                                                                                                     <  1:816912/150‑1 (MQ=255)
   cAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAAGGc                                                                                                                                                    <  2:4151880/150‑1 (MQ=255)
     gCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAAGGccc                                                                                                                                                  >  1:2226621/1‑150 (MQ=255)
      cTAAAGTTATCACAAATATAACCGCCCAATCTCGGCCCACATATCGGAGCGATAATCCCGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAAGGcccc                                                                                                                                                 <  2:1630199/150‑1 (MQ=255)
        aaaGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAAGGCCCCGc                                                                                                                                               >  2:74214/1‑150 (MQ=255)
          aGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCa                                                                                                                                             >  2:3773564/1‑150 (MQ=255)
           gTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCAt                                                                                                                                            >  2:3519816/1‑150 (MQ=255)
              aTCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTaa                                                                                                                                         >  1:2185789/1‑150 (MQ=255)
                   aaaTATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCt                                                                                                                                    <  2:880670/150‑1 (MQ=255)
                   aaaTATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCt                                                                                                                                    >  1:2357412/1‑150 (MQ=255)
                     atatAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGa                                                                                                                                  >  2:2346154/1‑150 (MQ=255)
                     atatAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGa                                                                                                                                  >  2:2851846/1‑150 (MQ=255)
                      tataACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGaa                                                                                                                                 >  2:93155/1‑150 (MQ=255)
                        taACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACg                                                                                                                               <  1:327687/150‑1 (MQ=255)
                            cGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTAATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGActc                                                                                                                           <  2:2869098/150‑1 (MQ=255)
                              cccAATCTCGGCCCACATATCGGAGCTATAATCACGGTCATTGACCATAATGCAAGAGCAATTGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTa                                                                                                                         <  2:3839398/150‑1 (MQ=255)
                              cccAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTa                                                                                                                         >  2:3351476/1‑150 (MQ=255)
                                cAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCATAGCAAATGTTCTTTTTTCTGGCGTATAATTCCTTAATAATAAACTCTGTGACAGTGGATTTAACGGCCCCGCCATTAACCCCTGAACGACTCTaaa                                                                                                                       <  2:2490200/150‑1 (MQ=255)
                                    atCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAAGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAat                                                                                                                   >  2:1936671/1‑150 (MQ=255)
                                        gCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCa                                                                                                               >  2:1922747/1‑150 (MQ=255)
                                              atatCGGAGCTATAATCACGGTCATTGACCATAATGCCTGTGAAATTGTTTTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACTGTGTAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACAt                                                                                                         <  1:468270/150‑1 (MQ=255)
                                              atatCGGAGCGATAATCACGTTCATTGACAATAATGCCATAGCAAATTTTCTTTTTTCTGGCGTATAATTCATTAATAATAAACTCTGTTACAGTGTAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACAt                                                                                                         <  1:468237/150‑1 (MQ=255)
                                              atatCGGAGCGATAATCACGGTAATTGACCATAATGCCACAGAAAATGTTCTTTTTTCTGGCGGAAAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTTAACGACTCTAAAAAATATCAGCACAt                                                                                                         <  1:168918/150‑1 (MQ=255)
                                                atCGGAGCTATAATCACGGTCATTGACAATAATGCCAGAGCAATTGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAACCTCTGTGACTGTGTAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCa                                                                                                       <  2:66067/150‑1 (MQ=255)
                                                atCGGAGCGATAATCACGTTCATTGACAATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCa                                                                                                       <  2:66272/150‑1 (MQ=255)
                                                 tCGGAGCGATAATCACGGTCTTTGACAATAATGCCAGAGCAAATTTTATTTTTTCTGGCGGATATTTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCaa                                                                                                      <  1:2889099/150‑1 (MQ=255)
                                                   ggAGCTATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGTATATTTCCTTAATAATAAACTCTGTGACTGTGGAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGa                                                                                                    <  1:2018752/150‑1 (MQ=255)
                                                   ggAGCGATAATCACGGTCTTTGACCATATTGCCTGAGCAAATGTTATTTTTTCTGGCGTATAATTCCTTAATAATAAAATCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGa                                                                                                    <  2:1510853/150‑1 (MQ=255)
                                                    gAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGAt                                                                                                   <  2:2335022/150‑1 (MQ=255)
                                                      gCGATAATCACGGTCTTTGACCATAATGCCAGAGAAAATTTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACTGTGTAATTAAGGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTg                                                                                                 <  1:2774092/150‑1 (MQ=255)
                                                         atatTCACGTTCTTTGAACATAATTCAAGATAATATTTTATTTTTTGTTGATGATTTTTCGTTAATATTAAAATCTTTTTATTTTTAATTTACGGCCCTGAAATTAACCCCTGATAGACTCTAAAATATATCAGCACATCAAGATTGGTc                                                                                              <  2:3521952/150‑1 (MQ=255)
                                                           aaTCACGGTATTTGACAATAATGCCAGAGCAAATGTTCTTTTTTTTGGGGGATAATTCCTTAATATTAAACTCTGTGACTGTGGAATTAACGGCCCCGCAATTAACCCCTTAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGa                                                                                            <  1:418186/150‑1 (MQ=255)
                                                            aTCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTATGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGAt                                                                                           >  1:379805/1‑150 (MQ=255)
                                                              caggttaaTTGACCATAATGCATTTGAAATTTTTTTTTTTTCGGGCGTATAATTCATTAATAATAAACTCTGTGACTGTGTATTTAAGGGCCCCGCCATTACCCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAg                                                                                         <  1:403678/143‑1 (MQ=255)
                                                              cACGTTCTTTGACCATAATGCCAGAGAAAATGTTCTTTTTTCTGGCGTATAATTCATTAATAATAAACTCTGTGACTGTGTAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAg                                                                                         <  1:403463/150‑1 (MQ=255)
                                                               aCGGTCATTTACCATAATGCCAGAGAAAATGTTCTTTTTTCTGGCGTATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTTAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAgg                                                                                        <  2:2123821/150‑1 (MQ=255)
                                                                 ggTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCt                                                                                      >  1:3957550/1‑150 (MQ=255)
                                                                 ggTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAAGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCt                                                                                      >  2:2068257/1‑150 (MQ=255)
                                                                    cATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAAGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTaca                                                                                   >  1:147733/1‑150 (MQ=255)
                                                                     aTTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTacac                                                                                  >  1:4366620/1‑150 (MQ=255)
                                                                     aTTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTacac                                                                                  >  1:2121227/1‑150 (MQ=255)
                                                                        gACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACAtt                                                                               >  1:1019804/1‑150 (MQ=255)
                                                                         aCCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTa                                                                              <  2:1980981/150‑1 (MQ=255)
                                                                         aCCATAATGCCAGAGAAAATGTTCTTTTTTCGGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGTAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTa                                                                              <  2:1980427/150‑1 (MQ=255)
                                                                              aaTGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGaa                                                                         >  2:2153878/1‑150 (MQ=255)
                                                                              aaTGCCAGAGAAAATGTTCTTTTTTCTGGCGTATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGaa                                                                         <  1:2723517/150‑1 (MQ=255)
                                                                              aaTGCCAGAGAAAATGTTCTTTTTTCGGGCGGATAATTCCTTAATAATAAACTCTGTGACTGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGaa                                                                         <  1:481244/150‑1 (MQ=255)
                                                                                tGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGa                                                                       >  1:3394164/1‑150 (MQ=255)
                                                                                 gCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGAc                                                                      >  1:4209026/1‑150 (MQ=255)
                                                                                 gCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGAc                                                                      >  1:1961341/1‑150 (MQ=255)
                                                                                 gCCAGAGAAATTTTTATTTTTTCTGGCGTATAATTCCTTAATAATAAACTCTGTGACAGGGTAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGAc                                                                      <  1:1173460/150‑1 (MQ=255)
                                                                                  ccatatcAAATTTTCTTTTTTCTGTGGTATATTTCATTAATATTAAACAGTGTGACATTGTAATTAATGGCCCCGCAATTAACCCCTTAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACAAATTAATGAAGACa                                                                     <  2:605624/144‑1 (MQ=255)
                                                                                   cAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAg                                                                    >  1:1767913/1‑150 (MQ=255)
                                                                                   cAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAg                                                                    >  2:395348/1‑150 (MQ=255)
                                                                                   cAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAg                                                                    >  2:394171/1‑150 (MQ=255)
                                                                                   cAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAg                                                                    >  2:394130/1‑150 (MQ=255)
                                                                                    agagCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGc                                                                   >  1:3236095/1‑150 (MQ=255)
                                                                                    agagCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGc                                                                   >  1:33550/1‑150 (MQ=255)
                                                                                     gagCAAATGTTCTTTTTTCTGGCGTATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCg                                                                  <  2:1215061/150‑1 (MQ=255)
                                                                                     gagCAAATGTTATTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCg                                                                  <  1:580791/150‑1 (MQ=255)
                                                                                         aaaTGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGaaaa                                                              >  2:1292389/1‑150 (MQ=255)
                                                                                             gTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAAAGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGaaaaaaaa                                                          <  2:4350252/150‑1 (MQ=255)
                                                                                               tCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGt                                                        >  1:3180767/1‑150 (MQ=255)
                                                                                                  tttttCTGGCGTATAATTCCTTAATAATAAACTCTGTGACAGTGTAATTAAAGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGAc                                                     <  1:4332362/150‑1 (MQ=255)
                                                                                                  tttttCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGTAATTAAAGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGAc                                                     <  1:4332402/150‑1 (MQ=255)
                                                                                                     ttCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGa                                                  >  1:2437444/1‑150 (MQ=255)
                                                                                                         ggCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGt                                              >  1:1537123/1‑150 (MQ=255)
                                                                                                         ggCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGt                                              >  2:325488/1‑150 (MQ=255)
                                                                                                          gCGGATAATTCCTTAATAATAAACTCTGTGACAGGGTAATTAAAGGCCCCGCCATTAACCCCTCAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTa                                             <  1:3460435/150‑1 (MQ=255)
                                                                                                           cGGAAAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCAATTAACCCCGTAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTaa                                            <  1:95813/150‑1 (MQ=255)
                                                                                                            ggATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTaaa                                           <  1:1868300/150‑1 (MQ=255)
                                                                                                             gATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTTAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTaaaa                                          <  2:1954032/150‑1 (MQ=255)
                                                                                                             gATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTaaaa                                          >  2:2515407/1‑150 (MQ=255)
                                                                                                              aTAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTaaaaa                                         >  1:918088/1‑150 (MQ=255)
                                                                                                              aTAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTaaaaa                                         >  1:2122417/1‑150 (MQ=255)
                                                                                                                  ttCCTTAATAATAAACTCTGTGACAGTGTAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAaataat                                     <  1:3598702/150‑1 (MQ=255)
                                                                                                                      ttAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTa                                 <  1:3222231/150‑1 (MQ=255)
                                                                                                                      ttAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTa                                 <  1:4092081/150‑1 (MQ=255)
                                                                                                                      ttAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTa                                 <  1:4090228/150‑1 (MQ=255)
                                                                                                                      ttAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTa                                 <  2:859671/150‑1 (MQ=255)
                                                                                                                        aataataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAAt                               >  1:3012552/1‑150 (MQ=255)
                                                                                                                          taataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTc                             >  1:3740926/1‑150 (MQ=255)
                                                                                                                           aataaACTCTGTTACAGTGTAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCg                            <  2:2881296/150‑1 (MQ=255)
                                                                                                                            ataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGc                           >  2:2950626/1‑150 (MQ=255)
                                                                                                                            ataaACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGc                           >  2:21931/1‑150 (MQ=255)
                                                                                                                              aaaCTCTGTTACAGTGGAATTAACGGCCCCGCAATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCt                         <  1:1653632/150‑1 (MQ=255)
                                                                                                                              aaaCTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATAATAATTCGCCt                         >  2:2629402/1‑150 (MQ=255)
                                                                                                                                  tctGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTc                     <  1:2492635/150‑1 (MQ=255)
                                                                                                                                     gtgACAGTGGAAATAACGGCCCCGCCATTCACCCCAGAACGACTCTAAAAAATATCAGCACATCAAGATTGGACGAGAGGCTACACATTAATGAAGACAGCGAAAAAAAAGAGACTGAAAGTAAAACTAATCATAAATCGACTAGTCtaa                  >  2:1904040/1‑148 (MQ=255)
                                                                                                                                      tgACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTtg                 <  1:1351682/150‑1 (MQ=255)
                                                                                                                                         ctgTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGc              <  1:3940611/148‑1 (MQ=255)
                                                                                                                                          aGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGcc             >  1:4507980/1‑150 (MQ=255)
                                                                                                                                             ggAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAAc          <  2:422035/150‑1 (MQ=255)
                                                                                                                                             ggAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAAc          >  2:4423130/1‑150 (MQ=255)
                                                                                                                                               aaTTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCTCCTATTCTTTGTGCCAACCt        >  2:242923/1‑150 (MQ=255)
                                                                                                                                                     cGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGt  >  2:381410/1‑150 (MQ=255)
                                                                                                                                                     cGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGt  >  1:2019119/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CCCCAGCTAAAGTTATCACAAATATAACCGCCCAATATCGGCCCACATATCGGAGCGATAATCACGGTCATTGACCATAATGCCAGAGCAAATGTTCTTTTTTCTGGCGGATAATTCCTTAATAATAAACTCTGTGACAGTGGAATTAACGGCCCCGCCATTAACCCCTGAACGACTCTAAAAAATATCAGCACATCAAGATTGGTCGATAGGCTACACATTAATGAAGACAGCGAAAAAAAAGTGACTGAAAGTAAAAATAATCTTAATTCGCCTATTCTTTGTGCCAACCTGCCAGT  >  CP009273/2475141‑2475439

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: