| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 265,159 | G→T | 8.0% | I245I (ATC→ATA) | perR ← | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 265,159 | 0 | G | T | 8.0% | 948.7 / 36.4 | 257 | I245I (ATC→ATA) | perR | CP4‑6 prophage; putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base G (120/116); new base T (12/9); total (132/125) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.53e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 260 total aligned reads displayed.
TACCCAGATTGAGTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACTGGTA > CP009273/265011‑265308 | tACCCAGATTGAGTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGa < 2:1617586/150‑1 (MQ=255) gATTGAGTTCATTCAGTAGCCAGGATTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAACTAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCAc < 1:1140016/150‑1 (MQ=255) ttGAGTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCTATTTCACGt < 2:2953573/150‑1 (MQ=255) ttGAGTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCTATTTCACGt < 2:672965/150‑1 (MQ=255) tGAGTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGtt < 1:589770/150‑1 (MQ=255) aGTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCa < 2:622689/150‑1 (MQ=255) gTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATACTGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAg < 2:2230221/150‑1 (MQ=255) gTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAg < 2:2230284/150‑1 (MQ=255) ttcattcaGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGc > 1:3112694/1‑150 (MQ=255) cattcaGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCa > 1:215382/1‑150 (MQ=255) tcaGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCagta < 1:3139953/150‑1 (MQ=255) aGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCagtagt < 2:1672395/150‑1 (MQ=255) tAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGttt < 1:378375/150‑1 (MQ=255) aGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGtttt > 2:580722/1‑150 (MQ=255) ggTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTc < 1:1023638/150‑1 (MQ=255) gTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCa < 2:4295523/150‑1 (MQ=255) tttGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAg < 2:3160301/150‑1 (MQ=255) tGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGca > 1:1153735/1‑150 (MQ=255) aTCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTcc > 1:2420878/1‑150 (MQ=255) cAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCa > 2:1334613/1‑150 (MQ=255) cAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCa > 1:4472273/1‑150 (MQ=255) cAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCa < 1:1812594/150‑1 (MQ=255) cAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCa > 1:1303316/1‑150 (MQ=255) cgcAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGcc < 2:1700752/150‑1 (MQ=255) cgcAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGcc < 2:3968083/150‑1 (MQ=255) cgcAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGcc > 1:1581234/1‑150 (MQ=255) gcAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCg < 1:2946853/150‑1 (MQ=255) gcAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCg > 2:2633550/1‑150 (MQ=255) gcAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCg < 1:667297/150‑1 (MQ=255) aaTGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCaa > 1:4531713/1‑150 (MQ=255) tgtgTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCgg > 2:2498653/1‑150 (MQ=255) gtTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGgcag > 1:2110322/1‑150 (MQ=255) gtTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGgcag < 2:3686110/150‑1 (MQ=255) gtTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGgcag < 2:114955/150‑1 (MQ=255) tGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCTATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGgcagca > 1:1614915/1‑150 (MQ=255) gCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCg < 1:2846024/150‑1 (MQ=255) cTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGc > 2:786126/1‑150 (MQ=255) gggggAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCa > 2:1021294/1‑150 (MQ=255) gggggAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCa > 2:602440/1‑150 (MQ=255) gggagAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCa > 1:3060591/1‑150 (MQ=255) ggggAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCAt < 1:3508103/150‑1 (MQ=255) ggggAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCAt > 1:1456319/1‑150 (MQ=255) gggAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAAATCCCAAGCCGTCAACTGCGGCAGCAATCGCCATa > 2:41010/1‑150 (MQ=255) gAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATaaa > 1:4383094/1‑150 (MQ=255) gAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATaaa < 2:3346962/150‑1 (MQ=255) gAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATaaa > 1:3292534/1‑150 (MQ=255) gAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATaaa > 1:920612/1‑150 (MQ=255) aaaaCCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAg > 2:3002468/1‑150 (MQ=255) aaCCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCt > 1:268447/1‑150 (MQ=255) aaCCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCt < 2:4235286/150‑1 (MQ=255) aCCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTa < 1:822444/150‑1 (MQ=255) aCCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTa < 1:3593182/150‑1 (MQ=255) ataatGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTc < 2:464956/150‑1 (MQ=255) ataatGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTc < 2:464950/150‑1 (MQ=255) ccGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGa < 2:4487710/150‑1 (MQ=255) ccGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGa > 1:1895576/1‑150 (MQ=255) ccGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGa > 1:144943/1‑150 (MQ=255) cGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGaa < 2:310900/150‑1 (MQ=255) gATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAg < 1:4068767/150‑1 (MQ=255) gATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAg < 1:3963892/150‑1 (MQ=255) atgtaatgtaTTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGACgg > 2:1914172/1‑150 (MQ=255) atgtaatgtaTTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAgg > 2:2376237/1‑150 (MQ=255) tgtaatgtaTTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGc > 2:1520297/1‑150 (MQ=255) gtaatgtaTTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCATTCGCCATAAAGCTACGGTCAAATCGAAGGcc < 1:3838672/150‑1 (MQ=255) gtaatgtaTTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCATTCGCCATAAAGCTACGGTCAAATCGAAGGcc < 1:1577440/150‑1 (MQ=255) aTTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAatta < 1:2263848/150‑1 (MQ=255) cGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTgg < 1:494101/150‑1 (MQ=255) tGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTg < 2:134645/150‑1 (MQ=255) tGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTg > 1:2343277/1‑150 (MQ=255) aCTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGt > 2:2576395/1‑150 (MQ=255) tGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCa > 1:2990703/1‑150 (MQ=255) tGTTTACAAGTGCGCATACCAGTGTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCa < 2:2916234/150‑1 (MQ=255) gTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCAt < 2:4386934/150‑1 (MQ=255) gTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAAGTATTGGGTGGCGTCAt > 2:3827919/1‑150 (MQ=255) cAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTAt > 1:3730690/1‑150 (MQ=255) aGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTc > 2:1840328/1‑150 (MQ=255) gTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCACTCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCg > 2:1226873/1‑150 (MQ=255) gCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTc < 2:2094477/150‑1 (MQ=255) aTACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGACGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCaa > 2:2875931/1‑150 (MQ=255) aTACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCaa < 1:4215077/150‑1 (MQ=255) aTACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCaa > 2:1811118/1‑150 (MQ=255) aTACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCaa < 1:4214692/150‑1 (MQ=255) aTACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCaa > 1:439455/1‑150 (MQ=255) aTACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCaa > 1:439523/1‑150 (MQ=255) aTACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCaa > 1:571187/1‑150 (MQ=255) aGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCAt > 2:3856687/1‑150 (MQ=255) tACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCta > 2:1507083/1‑149 (MQ=255) aCCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCttt > 1:2338567/1‑150 (MQ=255) cGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTcc < 1:1334613/150‑1 (MQ=255) cGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTcc < 1:782193/150‑1 (MQ=255) gCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCa > 1:1654234/1‑150 (MQ=255) cTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCAc > 1:47155/1‑150 (MQ=255) tAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACt < 2:541278/150‑1 (MQ=255) tAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACt > 1:4450665/1‑150 (MQ=255) tAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACt > 2:1676099/1‑150 (MQ=255) tAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACt > 1:3193798/1‑150 (MQ=255) aGCTATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACTg < 2:1250517/150‑1 (MQ=255) gCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACTgg > 2:3617811/1‑150 (MQ=255) cGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACTGGt > 1:4029737/1‑150 (MQ=255) gATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACTGGTa > 1:2075136/1‑150 (MQ=255) | TACCCAGATTGAGTTCATTCAGTAGCCAGGTTTTGAACACATCAAGCGCAGAATGCATGTGTTGGTGCTGGGGGAAAACCAAATAATGACCGATGTAATGTATTTCGCTGGTACTGTTTACAAGTGGGCATACCAGTTTACCGCTAGCGATTTCACGTTCAGCCAGTAGTTTTGATTCAAGCACAACTCCCAAGCCGTCAACTGCGGCAGCAATCGCCATAAAGCTACGGTCAAATCGAAGGCCATAATTATTGGGTGGCGTCATCTTATTCGCCTCAAACCATCCTTTCCACTGGTA > CP009273/265011‑265308 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |