mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 14 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 4096064 = | 225 (0.870) | 10 (0.040) | 4/276 | NT | 4.3% | coding (317/501 nt) | cpxP | inhibitor of the cpx response; periplasmic adaptor protein |
| ? | CP009273 | 4487999 = | NA (NA) | intergenic (+242/‑90) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
| * | ? | CP009273 | = 3180785 | NA (NA) | 8 (0.030) | 5/278 | NT | 3.5% | pseudogene (6/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | = 4096069 | 220 (0.850) | coding (322/501 nt) | cpxP | inhibitor of the cpx response; periplasmic adaptor protein | |||||
| * | ? | CP009273 | = 3180784 | NA (NA) | 12 (0.050) | 5/276 | NT | 4.9% | pseudogene (5/2445 nt) | yqiG | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein |
| ? | CP009273 | = 3357635 | 234 (0.900) | coding (1470/2382 nt) | yhcD | putative outer membrane fimbrial subunit usher protein | |||||
| * | ? | CP009273 | 3179455 = | NA (NA) | 13 (0.050) | 6/278 | NT | 4.6% | intergenic (+7/‑91) | yqiG/insC1 | pseudogene; fimbrial export usher family;putative membrane; Not classified; putative membrane protein/IS2 repressor TnpA |
| ? | CP009273 | = 3829191 | 269 (1.040) | coding (99/1383 nt) | yicJ | putative transporter | |||||
| * | ? | CP009273 | = 2960712 | 288 (1.110) | 3 (0.010) | 3/252 | NT | 1.1% | coding (1082/2247 nt) | ptsP | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein |
| ? | CP009273 | 2960902 = | 262 (1.120) | coding (892/2247 nt) | ptsP | fused PTS enzyme: PEP‑protein phosphotransferase (enzyme I)/GAF domain containing protein | |||||
| * | ? | CP009273 | = 2871639 | 276 (1.070) | 3 (0.010) | 3/220 | NT | 1.4% | intergenic (+662/+289) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871701 = | 208 (1.020) | intergenic (+724/+227) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2871149 | 356 (1.370) | 3 (0.010) | 3/244 | NT | 1.1% | intergenic (+172/+779) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871394 = | 226 (0.990) | intergenic (+417/+534) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2169361 | 265 (1.020) | 5 (0.020) | 4/270 | NT | 1.9% | coding (440/1263 nt) | gatZ | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit |
| ? | CP009273 | 2169367 = | 249 (0.990) | coding (434/1263 nt) | gatZ | D‑tagatose 1,6‑bisphosphate aldolase 2, subunit | |||||
| * | ? | CP009273 | = 1938494 | 246 (0.950) | 3 (0.010) | 3/244 | NT | 1.3% | noncoding (19/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences |
| ? | CP009273 | 1938592 = | 242 (1.070) | noncoding (117/127 nt) | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | REP138 (repetitive extragenic palindromic) element; contains 3 REP sequences | |||||
| * | ? | CP009273 | = 1874094 | 255 (0.980) | 4 (0.020) | 3/272 | NT | 1.6% | coding (112/360 nt) | yeaR | DUF1971 family protein, nitrate‑inducible |
| ? | CP009273 | = 2509092 | NA (NA) | intergenic (+170/+30) | insL1/yfeA | IS186 transposase/putative diguanylate cyclase | |||||