New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3385461243 (1.020)6 (0.030) 5/212 NT 3.0% noncoding (27/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
?CP009273 3385736 = 200 (1.100)noncoding (302/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
Rejected: Frequency below/above cutoff threshold.

Only 100 of 321 total aligned reads displayed.

GAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC  >  CP009273/3385313‑3385610
                                                                                                                                                    |                                                                                                                                                     
gAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCAACGTTTGTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCa                                                                                                                                                      >  2:897787/1‑150 (MQ=255)
    aTCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCt                                                                                                                                                  >  2:2330710/1‑150 (MQ=255)
    aTCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTAACAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTAAGGCTGACGGATGCGGCGTGAACGCCCTATCCAGCCt                                                                                                                                                  <  2:1235071/150‑1 (MQ=255)
       gcgAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACg                                                                                                                                               <  1:945644/150‑1 (MQ=255)
        cgAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCggcctacgg                                                                                                                                              >  1:1192818‑M1/1‑141 (MQ=255)
          aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt                                                                                                                                            <  1:2884125/150‑1 (MQ=255)
          aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt                                                                                                                                            <  2:2243707/150‑1 (MQ=255)
          aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt                                                                                                                                            >  2:2317520/1‑150 (MQ=255)
              aGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGt                                                                                                                                        >  1:3760933/1‑150 (MQ=255)
                     aTGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGCTAAGACTCATCGTTTGTGCTACTCGTTAGTTACTGCCGTAGACGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCTggct                                                                                                                                 <  2:1596016/150‑3 (MQ=38)
                       gTTTCAGGCCGTTCGCCGCTAGCATTTGTTCACTTACCAGGTTAAGTCTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGATGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTg                                                                                                                               >  2:4030091/1‑150 (MQ=255)
                            aGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGc                                                                                                                          >  1:1929182/1‑150 (MQ=255)
                               ccGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTg                                                                                                                       <  2:2866529/150‑1 (MQ=255)
                                  ttCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATa                                                                                                                    <  1:846172/150‑1 (MQ=255)
                                   tCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGGTTGTAGGCCTGATaa                                                                                                                   >  2:807929/1‑150 (MQ=255)
                                     gccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGa                                                                                                                 >  1:2015302/1‑150 (MQ=255)
                                      ccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGAc                                                                                                                <  1:3167703/150‑1 (MQ=255)
                                           aGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGcaca                                                                                                           >  2:696029/1‑150 (MQ=255)
                                                ttGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc                                                                                                      <  2:1794806/150‑1 (MQ=255)
                                                 tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCg                                                                                                     <  2:2050231/150‑1 (MQ=255)
                                                   ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa                                                                                                   <  1:2135923/150‑1 (MQ=255)
                                                    tCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt                                                                                                  <  2:1702432/150‑1 (MQ=255)
                                                     cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc                                                                                                 <  2:1911836/150‑1 (MQ=255)
                                                       cTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg                                                                                               >  2:420855/1‑150 (MQ=255)
                                                        ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAgg                                                                                              >  1:252992/1‑150 (MQ=255)
                                                         tACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc                                                                                             >  1:3339763/1‑150 (MQ=255)
                                                           ccAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGTCCTGATAAGACGCACAGCTTCGCATCAGGCaa                                                                                           >  2:1369587/1‑150 (MQ=255)
                                                           ccAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa                                                                                           <  2:243276/150‑1 (MQ=255)
                                                            cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc                                                                                          <  1:3357636/150‑1 (MQ=255)
                                                             aGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg                                                                                         >  2:2068180/1‑150 (MQ=255)
                                                              ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgg                                                                                        >  1:3303940/1‑150 (MQ=255)
                                                               gTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc                                                                                       >  2:148653/1‑150 (MQ=255)
                                                               gTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc                                                                                       <  2:2572674/150‑1 (MQ=255)
                                                               gTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc                                                                                       <  2:2572905/150‑1 (MQ=255)
                                                                ttAAGACTCATCGTTTTTGCTACTCGTTTGTTACTGCAGTTGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCt                                                                                      <  1:2179765/150‑1 (MQ=255)
                                                                 gtatactcaTCGTTTGTGCGACTCGTTAGTTCCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCttcctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaatta                                                                                     <  1:1521469‑M1/146‑67 (MQ=255)
                                                                   aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTc                                                                                   >  2:3410744/1‑150 (MQ=255)
                                                                    gACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCg                                                                                  >  1:202087/1‑150 (MQ=255)
                                                                        cATCGTTTTTGATACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACTCACAGCGTCGCATCAGGCAACGGCTGACGGATg                                                                              >  1:1069067/1‑150 (MQ=255)
                                                                           cGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATgcgg                                                                           >  1:3110994/1‑150 (MQ=255)
                                                                           cGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTGGTAGGCCTGTGACAACGCACAGCGTCGCATCAGGCAACGCCTCACGGAGgcgg                                                                           >  2:3612394/1‑150 (MQ=25)
                                                                             tttttGCTACTCGTTAGTTACTGCAGTAGTGGATTTTTTCCGGCTGCCGGAGGCGGCGTGAACGCCCTATCCAGCCTCCGTTTTTGTTCCGGTTTGTAGGCCTTATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATgcggcg                                                                         <  1:2836402/150‑1 (MQ=21)
                                                                                 tGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaaa                                                                     >  2:3937857/1‑150 (MQ=255)
                                                                                  gCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAAc                                                                    <  2:3085963/150‑1 (MQ=255)
                                                                                        cGTTAGTTACTGCAGTTGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCATACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTa                                                              <  1:638380/150‑1 (MQ=255)
                                                                                         gttagttaCTGCAGTAGAGGATTTTTTCCGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt                                                             <  2:2719457/150‑1 (MQ=255)
                                                                                          ttatttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATc                                                            <  2:1631272/150‑1 (MQ=255)
                                                                                          ttagttaCTGCTGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATACGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATc                                                            <  2:3544324/150‑1 (MQ=255)
                                                                                          ttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATc                                                            <  2:2980754/150‑1 (MQ=255)
                                                                                          ttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCATATc                                                            >  2:174540/1‑150 (MQ=255)
                                                                                          ttagttaCTGCAGTAGAGGATTTTTTACGGCGGCCGGATGCGGCGTGAACTCCCTATCCAGCCTACGGTTATGTTCCGGTTTTTAGGCCTGATACGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATc                                                            <  2:2615126/150‑1 (MQ=21)
                                                                                           tagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATcc                                                           >  2:2939908/1‑150 (MQ=255)
                                                                                            agttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGACGCAACAGCCAACGCCTCACGGATGCGCCGTAAACGCCTTATcca                                                          >  1:1003292/1‑149 (MQ=18)
                                                                                             gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGa                                                         >  1:4148931/1‑150 (MQ=255)
                                                                                                  tGCAGTCGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc                                                    <  2:2370228/150‑1 (MQ=255)
                                                                                                  tGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc                                                    <  2:3714909/150‑1 (MQ=255)
                                                                                                      gTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGtt                                                <  2:2508724/150‑1 (MQ=255)
                                                                                                       tAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCATATCCGACCTACGGTTa                                               >  1:3827742/1‑150 (MQ=255)
                                                                                                          agGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                            >  1:816873/1‑150 (MQ=255)
                                                                                                          agGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTATGTAGGCCTGATAAGACGAACAGAGTCTCATAAGGAAACGGCTGTCGGATGCGGGTTAAACGACTTATCCGACCTTCGGGTATGt                                            >  1:1793965/1‑150 (MQ=37)
                                                                                                             aTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc                                         >  1:1557357/1‑150 (MQ=255)
                                                                                                              ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTCGCCGCCCTACGGTTATGTTCCg                                        >  2:947603/1‑150 (MQ=255)
                                                                                                                ggccacggcTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgca                                      <  1:3194110‑M1/146‑114 (MQ=255)
                                                                                                                     cGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacact                                 >  2:534575‑M1/1‑32 (MQ=255)
                                                                                                                     cGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg                                 >  1:2375172/1‑150 (MQ=255)
                                                                                                                     cGGCTGCCGGATGCGGCGTGAACGCCATATCCAGCCTACGGTTATGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAg                                 <  2:1132038/150‑1 (MQ=255)
                                                                                                                        cTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcg                              <  1:1706897‑M1/150‑122 (MQ=255)
                                                                                                                        cTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGGCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGcc                              <  1:3667697/150‑1 (MQ=255)
                                                                                                                         tGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgt                             >  1:3087861‑M1/1‑28 (MQ=255)
                                                                                                                         tGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCt                             >  2:1434840/1‑150 (MQ=255)
                                                                                                                             ggATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa                         >  2:3194110/1‑150 (MQ=255)
                                                                                                                             ggATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCGGATa                         >  2:1984055/1‑150 (MQ=255)
                                                                                                                              gATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatt                        <  1:2691238‑M1/150‑128 (MQ=255)
                                                                                                                               aTGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgattt                       <  2:41110‑M1/150‑129 (MQ=255)
                                                                                                                               aTGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgattt                       <  1:3612402‑M1/150‑129 (MQ=255)
                                                                                                                               aTGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAg                       >  2:664799/1‑150 (MQ=255)
                                                                                                                                 gcggcgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGAc                     <  2:3336638/150‑1 (MQ=255)
                                                                                                                                   ggcgTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcgg                   >  2:3836708‑M1/1‑18 (MQ=255)
                                                                                                                                     cgTGACCGCCCTATCCAGCCTACGTTTTTGTCCGGGTTTGTAGGCCTGAAAAGACGCACAGCTTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac                 <  1:3566479/150‑1 (MQ=14)
                                                                                                                                     cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac                 >  1:3072247/1‑150 (MQ=255)
                                                                                                                                      gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca                >  1:961711/1‑150 (MQ=255)
                                                                                                                                      gTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca                >  2:2102394/1‑150 (MQ=255)
                                                                                                                                       tGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAg               >  1:1227065/1‑150 (MQ=255)
                                                                                                                                        gAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGc              >  2:308717/1‑150 (MQ=255)
                                                                                                                                        gAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGAAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCGTATCCGACCTACGGTTATGTTCCGTTTGTAGTCCTGATAAGACGCACAGc              >  1:2781371/1‑150 (MQ=255)
                                                                                                                                         aaCGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtc             >  1:2199726‑M1/1‑12 (MQ=255)
                                                                                                                                           cGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtcca           <  1:2102391‑M1/150‑141 (MQ=255)
                                                                                                                                           cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc           >  2:342592/1‑150 (MQ=255)
                                                                                                                                           cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc           <  1:2994373/150‑1 (MQ=255)
                                                                                                                                           cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc           <  1:12209/150‑1 (MQ=255)
                                                                                                                                           cGCCATATCCAGCCTACGTTTTTGTTCCGGTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc           <  1:1414419/150‑1 (MQ=255)
                                                                                                                                           cGCCATATCCAGCCTACGGTTTTGTTCCGGTTTGTTGGCCTGTTAAGACGCACAGCTTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTc           <  2:3482211/150‑1 (MQ=14)
                                                                                                                                               cgaTCCAGCCTCCGGTTATGTTCCGGTTTGTAGGCCGGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt       <  2:3148748/148‑1 (MQ=255)
                                                                                                                                               cTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcgg       <  2:3890766‑M1/150‑145 (MQ=255)
                                                                                                                                               cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt       >  2:2155603/1‑150 (MQ=255)
                                                                                                                                               cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt       <  2:1085069/150‑1 (MQ=255)
                                                                                                                                                tacccAGCCTACGGTTATGTTCGGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc      <  1:1903343/147‑1 (MQ=255)
                                                                                                                                                 aTCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcggac     >  2:2691112‑M1/1‑4 (MQ=255)
                                                                                                                                                   ccgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcggaccc   >  1:2932640‑M1/1‑2 (MQ=255)
                                                                                                                                                    cgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcggacccg  <  2:961711‑M1/150‑150 (MQ=255)
                                                                                                                                                    |                                                                                                                                                     
GAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGC  >  CP009273/3385313‑3385610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.