| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,516,177 | C→A | 23.3% | D177Y (GAT→TAT) | sgcR ← | putative DNA‑binding transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,516,177 | 0 | C | A | 23.3% | 725.9 / 170.4 | 283 | D177Y (GAT→TAT) | sgcR | putative DNA‑binding transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (108/109); new base A (26/40); total (134/149) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.60e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
Only 100 of 284 total aligned reads displayed.
GTGTTGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGATTTTAA > CP009273/4516030‑4516326 | gtTGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAg < 2:506032/150‑1 (MQ=255) tGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGga > 1:2996278/1‑150 (MQ=255) tACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGAt > 2:2114490/1‑150 (MQ=255) aCAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATa < 1:2896022/150‑1 (MQ=255) aCAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATa > 1:1001748/1‑150 (MQ=255) aTGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGc > 2:2487958/1‑150 (MQ=255) aTGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGc > 2:196147/1‑150 (MQ=255) gCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCAc < 1:3250482/150‑1 (MQ=255) gCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCAc < 2:13766/150‑1 (MQ=255) gCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCAc < 2:1747337/150‑1 (MQ=255) ggCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGt < 2:1484463/150‑1 (MQ=255) ggCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGt < 1:3459999/150‑1 (MQ=255) ggCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGt > 2:3286891/1‑150 (MQ=255) ggCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGt > 2:3307830/1‑150 (MQ=255) gCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGtt < 2:581878/150‑1 (MQ=255) tCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCt < 2:3532624/150‑1 (MQ=255) cAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTa < 1:2692932/150‑1 (MQ=255) aaCGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTAc > 1:2874219/1‑150 (MQ=255) aCGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACg < 2:3095416/150‑1 (MQ=255) ggCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGa > 2:3705613/1‑150 (MQ=255) ggCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGa > 2:1275262/1‑150 (MQ=255) gCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGaa > 2:1803380/1‑150 (MQ=255) cATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGaaa > 2:924976/1‑150 (MQ=255) cAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAgg > 2:1172078/1‑150 (MQ=255) cAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAgg < 1:3020752/150‑1 (MQ=255) aaaTTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGc < 1:689186/150‑1 (MQ=255) aaaTTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGc < 1:502033/150‑1 (MQ=255) aaaTTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGc < 1:1791235/150‑1 (MQ=255) ttGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGa > 1:777859/1‑150 (MQ=255) tGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGat < 1:916836/150‑1 (MQ=255) gAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGatc < 2:2963271/150‑1 (MQ=255) aGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGatca < 2:917150/150‑1 (MQ=255) aGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGatca < 2:1895610/150‑1 (MQ=255) cGGCCATGAGAATAACTTCACGCGAGCGTTGATTAATCCGTGTTTTCACCCCGACCTCATACTTGGTGGCATTGGTGATCGCGGTCTCCAGCGACTGCGCATCGCAGGAGATAATCGGACGTTCTACGGAAAAGGCATTGATCATCTCCa < 1:4127711/150‑1 (MQ=255) cGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCa < 1:1875778/150‑1 (MQ=255) ggCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAg > 1:3197402/1‑150 (MQ=255) aaCTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGActctc > 1:3544192/1‑150 (MQ=255) aCTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGActctct < 2:3791483/150‑1 (MQ=255) aCTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGActctct > 1:253517/1‑150 (MQ=255) tCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCt < 1:1066407/150‑1 (MQ=255) tCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCt < 2:4112328/150‑1 (MQ=255) aCGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTAc > 1:3840460/1‑150 (MQ=255) cgcgAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTAcc > 2:3498809/1‑150 (MQ=255) gcgAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCg < 2:1005785/150‑1 (MQ=255) tGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATaa < 1:115772/150‑1 (MQ=255) ataatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCt > 2:2542851/1‑150 (MQ=255) ataatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCt < 1:2736839/150‑1 (MQ=255) ataatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCt < 2:3981109/150‑1 (MQ=255) ataatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCt > 1:3443203/1‑150 (MQ=255) taatCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTg < 1:1852674/150‑1 (MQ=255) atCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTggg < 1:3427061/150‑1 (MQ=255) atCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTggg < 1:1493600/150‑1 (MQ=255) tCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGc > 2:3836245/1‑150 (MQ=255) ccGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCg > 2:2761296/1‑150 (MQ=255) gtTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATc < 1:3327196/150‑1 (MQ=255) gtTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATc > 2:471065/1‑150 (MQ=255) gtTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATc < 1:2891264/150‑1 (MQ=255) ttttCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCa < 1:3079588/150‑1 (MQ=255) ttCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGt > 2:1182900/1‑150 (MQ=255) cACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcc > 1:1367646/1‑150 (MQ=255) aCCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcct < 1:1334975/150‑1 (MQ=255) aCCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcct < 2:3025997/150‑1 (MQ=255) aCCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcct < 1:2938341/150‑1 (MQ=255) aCCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGtcct < 1:3608311/150‑1 (MQ=255) ccGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCg > 2:3922143/1‑150 (MQ=255) gACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGAt < 2:824252/150‑1 (MQ=255) gACCTCAAACATGGTGGCATTGGTGATCCCCGTCACCAGCTACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGAACATCTCCAGCTCCAGACTCTCACCTACCGAAAAATAACCTGGGCGAATCAGACCTCCGAt > 2:2015945/1‑150 (MQ=255) aCCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATa < 2:2242915/150‑1 (MQ=255) cTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAAt > 1:571090/1‑150 (MQ=255) cTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAAt < 1:1039234/150‑1 (MQ=255) cAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGt > 1:1634945/1‑150 (MQ=255) cAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGt > 2:1107352/1‑150 (MQ=255) aaaaCATGGTGGCATTGGTGAACCCCGTCTCCAGCGACAGCGCATCGAAGGAGATAAAAGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGt > 2:2268679/2‑150 (MQ=255) aaaCATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTa > 2:4051835/1‑150 (MQ=255) aaaCATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTa > 2:1506216/1‑150 (MQ=255) aTGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACtt > 1:1766097/1‑150 (MQ=255) tggtggCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACttt > 1:2562725/1‑150 (MQ=255) aTTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATg > 2:3194588/1‑150 (MQ=255) ggTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATgggg < 2:1414360/150‑1 (MQ=255) ggTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATgggg < 2:3444328/150‑1 (MQ=255) ggTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATgggg > 1:2036848/1‑150 (MQ=255) tGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGaa < 2:2913043/150‑1 (MQ=255) gATCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGaaa > 1:704257/1‑150 (MQ=255) aTCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGATAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGaaaa < 1:3277879/150‑1 (MQ=255) aTCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGaaaa > 2:130157/1‑150 (MQ=255) aTCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGaaaa < 1:2226061/150‑1 (MQ=255) aTCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGaaaa < 1:2468506/150‑1 (MQ=255) aTCCCCGTCTCCAGCGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGaaaa < 1:154551/150‑1 (MQ=255) tCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAAc < 1:1976609/150‑1 (MQ=255) ccGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGc > 1:447097/1‑150 (MQ=255) aGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCa > 1:1107722/1‑150 (MQ=255) aGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCa > 1:3883831/1‑150 (MQ=255) cGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCAtt < 2:1676546/150‑1 (MQ=255) cGACAGCGCATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCAtt > 2:719501/1‑150 (MQ=255) aGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCg > 1:1189563/1‑150 (MQ=255) cgcATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGAt < 1:4065949/150‑1 (MQ=255) gcATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTGTCCACATGGGGAAAACAGCCCAGTTCATTGGCGAtt < 2:3085548/150‑1 (MQ=255) gcATAGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGAGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGAtt > 2:540847/1‑150 (MQ=255) cATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGAttt < 1:644566/150‑1 (MQ=255) cATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGAttt > 2:634421/1‑150 (MQ=255) | GTGTTGCTACAGCATGCGGCTCAACGGCATCAAATTTTGAGTGATCGGCCATGAGAATAACTTCACGCGAGCGTTGAATAATCCGTGTTTTCACCCCGACCTCAAACATGGTGGCATTGGTGATCCCCGTCTCCAGCGACAGCGCATCGCAGGAGATAAACGCACGTTCTACGGAAAAGGCATTGATCATCTCCAGCGCCAGACTCTCTCCTACCGAAAAATAACCTGGGCGAATCAGTCCTCCGATAATGTAACTTTCCACATGGGGAAAACAGCCCAGTTCATTGGCGATTTTAA > CP009273/4516030‑4516326 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |