Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,591,894 C→A 36.2% pseudogene (351/5323 nt) yneO ← pseudogene, AidA homolog

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,591,8940CA36.2% 348.6 / 229.6 229pseudogene (351/5323 nt)yneOpseudogene, AidA homolog
Reads supporting (aligned to +/- strand):  ref base C (74/72);  new base A (38/45);  total (112/117)
Fisher's exact test for biased strand distribution p-value = 4.95e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 234 total aligned reads displayed.

TTTAATGAACCTGTGCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATAGTGGTTAAGGAG  >  CP009273/1591745‑1592041
                                                                                                                                                     |                                                                                                                                                   
tttAATGAACCTGTGCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTc                                                                                                                                                     >  1:2130041/1‑150 (MQ=255)
tttAATGAACCTGTGCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTc                                                                                                                                                     >  1:20515/1‑150 (MQ=255)
  tAATGAACCTGTGCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAg                                                                                                                                                   >  2:431240/1‑150 (MQ=255)
   aaTGAACCTGTGCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGc                                                                                                                                                  >  2:2699486/1‑150 (MQ=255)
       aaCCTGTGCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTcc                                                                                                                                              >  1:1208966/1‑150 (MQ=255)
         ccTGTGCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTcccc                                                                                                                                            <  2:1909143/150‑1 (MQ=255)
            gtgCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGtt                                                                                                                                         <  2:784688/150‑1 (MQ=255)
            gtgCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGtt                                                                                                                                         <  1:3183898/150‑1 (MQ=255)
            gtgCCATAGCTACCTATGTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGtt                                                                                                                                         <  2:784671/150‑1 (MQ=255)
             tgCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTc                                                                                                                                        >  2:3496562/1‑150 (MQ=255)
             tgCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCACAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTc                                                                                                                                        <  2:3281714/150‑1 (MQ=255)
                cATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCgg                                                                                                                                     >  1:3071014/1‑150 (MQ=255)
                 aTAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGa                                                                                                                                    >  1:76075/1‑150 (MQ=255)
                 aTAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGa                                                                                                                                    >  1:3454492/1‑150 (MQ=255)
                   aGCTACCTATTTCGAATACTTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGAtt                                                                                                                                  <  2:3660767/150‑1 (MQ=255)
                     cTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGa                                                                                                                                >  1:2363110/1‑150 (MQ=255)
                        ccTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGAccc                                                                                                                             >  1:1664702/1‑150 (MQ=255)
                          tATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCcac                                                                                                                           >  1:1280396/1‑150 (MQ=255)
                           aTTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCcaca                                                                                                                          >  2:2196969/1‑150 (MQ=255)
                            tttCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACAt                                                                                                                         >  2:3877747/1‑150 (MQ=255)
                             ttCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACAtt                                                                                                                        <  1:1397305/150‑1 (MQ=255)
                             ttCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACAtt                                                                                                                        <  2:1497328/150‑1 (MQ=255)
                                gAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTaa                                                                                                                     >  2:2583873/1‑150 (MQ=255)
                                 aataatTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTaaa                                                                                                                    >  1:3558333/1‑150 (MQ=255)
                                  ataatTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAg                                                                                                                   <  2:247221/150‑1 (MQ=255)
                                   taatTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAgg                                                                                                                  >  2:2726031/1‑150 (MQ=255)
                                            cgtcAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCatt                                                                                                         <  2:3431745/150‑1 (MQ=255)
                                             gtcAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCatta                                                                                                        >  1:1499177/1‑150 (MQ=255)
                                              tcAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCattat                                                                                                       <  1:2909308/150‑1 (MQ=255)
                                                aGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTAttt                                                                                                     >  1:957415/1‑150 (MQ=255)
                                                aGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTAttt                                                                                                     <  2:2920129/150‑1 (MQ=255)
                                                aGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTAttt                                                                                                     >  1:3047361/1‑150 (MQ=255)
                                                aGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTAttt                                                                                                     >  2:609572/1‑150 (MQ=255)
                                                 gAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTc                                                                                                    <  1:267099/150‑1 (MQ=255)
                                                 gAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTc                                                                                                    <  1:1020771/150‑1 (MQ=255)
                                                  aaCAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTcc                                                                                                   >  1:488882/1‑150 (MQ=255)
                                                  aaCAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTcc                                                                                                   <  2:3340851/150‑1 (MQ=255)
                                                     agagTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCt                                                                                                >  2:1784775/1‑150 (MQ=255)
                                                       agTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTAt                                                                                              <  2:3933790/150‑1 (MQ=255)
                                                        gTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATc                                                                                             <  2:1001897/150‑1 (MQ=255)
                                                          ccTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCAt                                                                                           >  1:87733/1‑150 (MQ=255)
                                                          ccTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCAt                                                                                           <  2:2448663/150‑1 (MQ=255)
                                                           ctctCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATa                                                                                          >  1:2762859/1‑150 (MQ=255)
                                                           ctctCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATa                                                                                          <  1:2127416/150‑1 (MQ=255)
                                                               cccTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAAt                                                                                      <  2:913133/150‑1 (MQ=255)
                                                               cccTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAAt                                                                                      >  1:526905/1‑150 (MQ=255)
                                                                   cAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGcc                                                                                  <  1:2558530/150‑1 (MQ=255)
                                                                    aaCATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCa                                                                                 >  2:4036932/1‑150 (MQ=255)
                                                                    aaCATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCa                                                                                 <  1:4069536/150‑1 (MQ=255)
                                                                    aaCATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCa                                                                                 >  2:1182972/1‑150 (MQ=255)
                                                                    aaCATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCa                                                                                 <  1:1053165/150‑1 (MQ=255)
                                                                       aTTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGt                                                                              <  1:2905477/150‑1 (MQ=255)
                                                                       aTTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCAACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGt                                                                              <  2:1569109/150‑1 (MQ=255)
                                                                              gTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCAccc                                                                       >  1:3287075/1‑150 (MQ=255)
                                                                               tCCCGACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCa                                                                      >  2:3595394/1‑150 (MQ=255)
                                                                                   gACGCCTCCTGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAAc                                                                  >  2:720672/1‑150 (MQ=255)
                                                                                       cctcctGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTa                                                              <  1:3679916/150‑1 (MQ=255)
                                                                                       cctcctGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTa                                                              <  1:2712227/150‑1 (MQ=255)
                                                                                        ctcctGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTaa                                                             >  1:2971614/1‑150 (MQ=255)
                                                                                        ctcctGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTaa                                                             >  1:3346227/1‑150 (MQ=255)
                                                                                        ctcctGTCGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTaa                                                             <  1:3916708/150‑1 (MQ=255)
                                                                                           ctGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACgg                                                          >  1:780888/1‑150 (MQ=255)
                                                                                            tGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGt                                                         <  1:3132537/150‑1 (MQ=255)
                                                                                             gTCGAAGAAAATAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTg                                                        <  2:248178/150‑1 (MQ=255)
                                                                                               cGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGcc                                                      >  1:2091469/1‑150 (MQ=255)
                                                                                               cGAAGAACCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCCATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGcc                                                      >  2:520815/1‑150 (MQ=255)
                                                                                                gaagaaCCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGccc                                                     >  2:1665402/1‑150 (MQ=255)
                                                                                                gaagaaCCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGccc                                                     >  2:1298842/1‑150 (MQ=255)
                                                                                                 aagaaCCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCct                                                    >  1:3694845/1‑150 (MQ=255)
                                                                                                 aagaaCCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCct                                                    >  1:2012072/1‑150 (MQ=255)
                                                                                                  agaaCCTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCctc                                                   <  1:4109650/150‑1 (MQ=255)
                                                                                                    aaCCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTg                                                 <  1:2996448/150‑1 (MQ=255)
                                                                                                     aCCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGa                                                <  2:2786297/150‑1 (MQ=255)
                                                                                                     aCCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGa                                                >  2:1869441/1‑150 (MQ=255)
                                                                                                       cTAATATTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGt                                              >  2:1981883/1‑150 (MQ=255)
                                                                                                              tAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCAtt                                       >  2:2470750/1‑150 (MQ=255)
                                                                                                               aaaTAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTa                                      <  1:1897936/150‑1 (MQ=255)
                                                                                                               aaaTAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTa                                      >  2:3126894/1‑150 (MQ=255)
                                                                                                                aaTAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAg                                     >  2:2988012/1‑150 (MQ=255)
                                                                                                                 aTAGCCTCCCTCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAgc                                    <  2:214757/150‑1 (MQ=255)
                                                                                                                  tAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAgcg                                   >  2:1372895/1‑150 (MQ=255)
                                                                                                                  tAGCCTCCATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAgcg                                   <  1:1745467/150‑1 (MQ=255)
                                                                                                                   aGCCTCCCTCGACGTGACCCTTCTGTTTAATATTCAGCGTACCAGATACGGATTCACCCACATTTAAAGCCCTAGCATTATGTCCGATATCATACAATCCCCCCGTGACACACAAAACATTAACTGTGACCTCATAGTCCACATTAgcgc                                  >  2:1922398/1‑150 (MQ=255)
                                                                                                                       tCCATCGACGTGACCATTCTTTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAAt                              <  2:3809145/150‑1 (MQ=255)
                                                                                                                        ccATCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATg                             >  2:2110375/1‑150 (MQ=255)
                                                                                                                          aTCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGAATGACCCACATTTAAAGGCCTTGCAATATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAAAGGTGCCCTCTGAGTCCTCATAAGCGCCAATGAc                           >  1:3920440/1‑150 (MQ=255)
                                                                                                                          aTCGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGAc                           <  2:3403601/150‑1 (MQ=255)
                                                                                                                            cGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGc                         >  2:611773/1‑150 (MQ=255)
                                                                                                                            cGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGc                         <  2:1730057/150‑1 (MQ=255)
                                                                                                                            cGACGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGc                         <  2:1859119/150‑1 (MQ=255)
                                                                                                                              aCGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTg                       <  1:3816704/150‑1 (MQ=255)
                                                                                                                              aCGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTg                       <  2:2784123/150‑1 (MQ=255)
                                                                                                                              aCGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTg                       >  2:2227995/1‑150 (MQ=255)
                                                                                                                               cGTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACAGTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTgg                      >  2:1109536/1‑150 (MQ=255)
                                                                                                                                gTGACCCTTCTGTTTAATATTAAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGgt                     <  1:749748/150‑1 (MQ=255)
                                                                                                                                    cccTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGgtagta                 <  2:63584/150‑1 (MQ=255)
                                                                                                                                          tGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATAGTg           <  2:820631/150‑1 (MQ=255)
                                                                                                                                             ttAATATTAAGCGTCCCCGGTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATAGTGGtt        <  2:3061697/150‑1 (MQ=255)
                                                                                                                                               aataatAAGAGTCCCCGTTCATTATTGACACACATTTAAAGGCCTTGCATAATTTCCTCTATCATACAATCTAAAGTTGCCACCCAAAACATTAACGGTGCCCTCTGAGTACTCATTAGCGCCAATGACGCTGGTATTAATAGTGGTTaa      <  2:3202168/150‑1 (MQ=255)
                                                                                                                                                   ttCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATAGTGGTTAaggag  <  1:4050373/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                   
TTTAATGAACCTGTGCCATAGCTACCTATTTCGAATAATTCGGTCGTCAGAACAGAGTCCTCTCCCTCAACATTGACCGTCCCGACGCCTCCTGTCGAAGAACCTAATCTTAAATAGCCTCCATCGACGTGACCCTTCTGTTTAATATTCAGCGTCCCCGTTCCGGATTGACCCACATTTAAAGGCCTTGCATTATTTCCGCTATCATACAATCGCCAGGTGCCACCCAAAACATTAACGGTGCCCTCTGAGTCCTCATTAGCGCCAATGACGCTGGTAGTAATAGTGGTTAAGGAG  >  CP009273/1591745‑1592041

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑