| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 1,934,464 | C→A | 36.7% | intergenic (‑14/+106) | lpxM ← / ← mepM | myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase/murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,934,464 | 0 | C | A | 36.7% | 351.4 / 255.9 | 245 | intergenic (‑14/+106) | lpxM/mepM | myristoyl‑acyl carrier protein (ACP)‑dependent acyltransferase/murein DD‑endopeptidase, space‑maker hydrolase, septation protein |
| Reads supporting (aligned to +/- strand): ref base C (91/64); new base A (47/42); total (138/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.09e-01 | |||||||||||
Only 100 of 248 total aligned reads displayed.
GATCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTGCGCC > CP009273/1934315‑1934612 | gATCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTc > 2:3452463/1‑150 (MQ=255)gATCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTc < 1:1936123/150‑1 (MQ=255) aTCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCg < 2:1528014/150‑1 (MQ=255) tCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGAAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAgg > 1:1403292/1‑150 (MQ=255) cACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGa < 2:2387621/150‑1 (MQ=255) aCGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGAt < 1:2733243/150‑1 (MQ=255) cGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATa < 2:4092818/150‑1 (MQ=255) cGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATa < 1:2889976/150‑1 (MQ=255) ggAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATaa < 1:3043644/150‑1 (MQ=255) ggAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATaa < 1:3612930/150‑1 (MQ=255) ggAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATACTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATaa < 1:4077085/150‑1 (MQ=255) aaCTTTGGCGGCGTTAACGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAgg < 2:61892/150‑1 (MQ=255) aaCTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAgg > 1:3787355/1‑150 (MQ=255) ttGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCaaa < 2:1683226/150‑1 (MQ=255) ggcggcGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCCATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCcaaaa > 1:1790963/1‑150 (MQ=255) ggcgTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAaatca < 2:700605/150‑1 (MQ=255) ggcgTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAaatca > 1:1751911/1‑150 (MQ=255) ggcgTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAaatca < 1:3228571/150‑1 (MQ=255) cgTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTATTTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAaatcaa > 1:3376433/1‑150 (MQ=255) aaaGCGATACCCGCCATCGCTTCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTgg < 1:2196606/150‑1 (MQ=255) aaaGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTgg < 1:1427055/150‑1 (MQ=255) aaaGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTgg > 1:813796/1‑150 (MQ=255) aGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTg > 1:1878991/1‑150 (MQ=255) aGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTg < 2:554027/150‑1 (MQ=255) cGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGAt > 1:686565/1‑150 (MQ=255) aTACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAg < 1:796935/150‑1 (MQ=255) ccATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCTTTTCCATGCTTTTCCAGTTTCGGATAAGTCAAAAATCAATCTGGTGATAGTGTAgct > 2:2237419/1‑149 (MQ=255) aTCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAgcggc > 1:1340267/1‑150 (MQ=255) tCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAgcggcg < 1:2948443/150‑1 (MQ=255) cGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAATTCAATCTGGTGATAGTGTAGCGgcgc > 2:2351455/1‑150 (MQ=255) tgctACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAAc > 1:2913991/1‑150 (MQ=255) gctACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACt < 1:1562612/150‑1 (MQ=255) tACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTg > 2:4034544/1‑150 (MQ=255) ccAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCg < 2:621218/150‑1 (MQ=255) ccATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCAcc > 1:475405/1‑150 (MQ=255) ggtGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCATACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCTGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCa > 1:3446876/3‑150 (MQ=255) cTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATa < 1:41728/150‑1 (MQ=255) tCCCCAGTAGCGCGGGTGGCTAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaa > 1:520964/1‑150 (MQ=255) tCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaa > 1:2732159/1‑150 (MQ=255) cccAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaa > 2:3130635/1‑150 (MQ=255) ccAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaaa < 1:1575626/150‑1 (MQ=255) aGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaaaaa > 1:1018341/1‑150 (MQ=255) aGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaaaaa > 2:455193/1‑150 (MQ=255) aGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATaaaaaaa > 2:3767425/1‑150 (MQ=255) aGTAGCGCGGGAGGCGAAAGGATTTATCAAACTCAGGAATGTATACGCTATTA‑TTTTTTTTCGTTTCCATTCTTATAAAGTTTCGGATAAGGCAAAAATCAATATGATGATAGTGTAGCGGCGCAACTTGCCCCGCACAAAAAaaaataa > 2:3271016/1‑150 (MQ=255) gTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAg < 2:218233/150‑1 (MQ=255) aGCGAGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGcc < 1:1970511/150‑1 (MQ=255) gcgcGGGTGGCGACAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCg < 2:3478928/150‑1 (MQ=255) cgcgGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCgg < 2:371465/150‑1 (MQ=255) cgcgGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCgg < 2:3842950/150‑1 (MQ=255) gggTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTac < 1:390266/150‑1 (MQ=255) tGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTactga < 2:2674640/150‑1 (MQ=255) gCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTactgact < 1:633750/150‑1 (MQ=255) cGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTactgactg > 2:1132503/1‑150 (MQ=255) gAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGc > 2:284381/1‑150 (MQ=255) aaGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGt > 2:1782885/1‑150 (MQ=255) aTTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCg > 1:2948942/1‑150 (MQ=255) aTTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCg > 1:3828010/1‑150 (MQ=255) aTCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTg < 1:2371922/150‑1 (MQ=255) tCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGc > 1:1286760/1‑150 (MQ=255) tCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGc > 1:867591/1‑150 (MQ=255) tCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGc > 1:1108231/1‑150 (MQ=255) cAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCg > 2:1016223/1‑150 (MQ=255) aaaCTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGa > 2:1480825/1‑150 (MQ=255) aCTCAGGAATGTCTTCGCTATTA‑TTTTTATTCGTTTCCATGCTTTTCCAGTTGAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAAt < 2:3090860/150‑1 (MQ=255) aCTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAAt < 1:2420901/150‑1 (MQ=255) cTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGATGCGAATg > 1:1661999/1‑150 (MQ=255) cAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGa < 2:1416128/150‑1 (MQ=255) cAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGa > 2:2657776/1‑150 (MQ=255) aGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGAt > 2:3104613/1‑150 (MQ=255) aGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATAAATCTGGTGATAGTGTAGCGGCGCAACTAGCCCCGCACCCAAAAAAAAAAGCCGTTACTGACAGCGTACCGGCTGCGAATGGAt > 2:1832802/1‑150 (MQ=255) ggAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATg > 1:2486522/1‑150 (MQ=255) aaagTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGtt > 1:641294/4‑150 (MQ=255) gTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGttaat > 2:2047669/1‑150 (MQ=255) tATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGttaatt < 1:3904842/150‑1 (MQ=255) aTTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGttaatta > 1:508520/1‑150 (MQ=255) aTTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGttaatta < 1:472332/150‑1 (MQ=255) gCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCa < 1:1681949/150‑1 (MQ=255) tatta‑tTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCaaa > 1:1508550/1‑150 (MQ=255) tttttCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCt > 2:1267002/1‑150 (MQ=255) tttttCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCt > 2:119426/1‑150 (MQ=255) tttttCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCt > 1:3985970/1‑150 (MQ=255) ttCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCg < 1:3319744/150‑1 (MQ=255) ttCGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCg < 2:1961012/150‑1 (MQ=255) tCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCgg < 2:16068/150‑1 (MQ=255) cGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTCGCTGCGGc > 2:3639620/1‑150 (MQ=255) cGTTTCCATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGc > 1:3250038/1‑150 (MQ=255) ccATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAt < 1:1068074/150‑1 (MQ=255) ccATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAt < 1:1641632/150‑1 (MQ=255) cATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAtc > 1:4025968/1‑150 (MQ=255) cATGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAtc > 2:3375986/1‑150 (MQ=255) tGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAtctc > 2:1217432/1‑150 (MQ=255) tGCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAAtctc < 1:2791843/150‑1 (MQ=255) gCTTTTCCAGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATctct > 2:253303/1‑150 (MQ=255) ttCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTgg > 2:3138174/1‑150 (MQ=255) aGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTg > 1:2518067/1‑150 (MQ=255) aGTTTAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTg > 2:855626/1‑150 (MQ=255) tttCGGATAACCCAAAAATCAATCTGGAGATAGTGAAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTCACTGCGTACCGGCTGCGAAAGGATGTTAATTAATCAAACAGTAGCAGCGGCACAATCTCTTTGGCCTgcc > 2:1424320/1‑149 (MQ=255) tttAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTgcg > 2:2968353/1‑150 (MQ=255) tttAGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTgcg > 1:230632/1‑150 (MQ=255) | GATCACGGAACTTTGGCGGCGTTAAAGCGATACCCGCCATCGCTGCTACGCCCAGCCATGCTCCCCAGTAGCGCGGGTGGCGAAAGGATTTATCAAACTCAGGAATGTATTCGCTATTA‑TTTTTTTTCGTTTCCATGCTTTTCCAGTTTCGGATAAGGCAAAAATCAATCTGGTGATAGTGTAGCGGCGCAACTTGCCCCGCACCAAATAAAAAAAGCCGGTACTGACTGCGTACCGGCTGCGAATGGATGTTAATTAATCAAACCGTAGCTGCGGCACAATCTCTTTGGCCTGCGCC > CP009273/1934315‑1934612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |