| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 161,068 | A→C | 11.8% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 161,068 | 0 | A | C | 11.8% | 234.3 / 3.1 | 127 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (45/64); new base C (4/14); total (49/78) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.91e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 129 total aligned reads displayed.
CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAG > CP009273/160919‑161215 | ccGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa > 1:747981/1‑150 (MQ=255)ccGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCa > 1:1873396/1‑150 (MQ=255) gTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc > 2:2817096/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCa > 2:907760/1‑150 (MQ=255) aGGTGCAAAAAGAGATGAAAGGGGGTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgc < 2:1874194/150‑1 (MQ=255) aGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgc < 2:3125272/150‑1 (MQ=255) tGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcg > 2:3225351/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCAc > 1:3244126/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAc > 2:3900168/1‑150 (MQ=255) aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg > 1:3224286/1‑150 (MQ=255) aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACg > 1:366857/1‑150 (MQ=255) aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACgg > 1:2111686/1‑149 (MQ=255) aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACgg > 1:3701404/1‑149 (MQ=255) aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGt > 2:2912428/1‑150 (MQ=255) aaGTGATGAAAGGGCGTTATCCAAAACTGGTCTGGCCGGACTACCCGGCAAATACTGCACCGCCGCGAGGGACGAAAAAGTATTCGGAAGGTTGGTTTTCTCCCTCTCCCGGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACggt < 2:3078575/150‑3 (MQ=37) gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgga > 2:3444829/1‑147 (MQ=255) agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgggg > 1:1059825/1‑146 (MQ=255) agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGtgggc > 1:1988465/1‑146 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggaccc > 1:3535884/1‑150 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggaccc > 2:1184038/1‑150 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGTGGGAATCAGCGCGCACGTtaaccca > 2:2178521/1‑149 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTgcaaccc > 2:1493000/1‑149 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtgacccg > 1:1022751/1‑149 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtgacccc > 1:1022896/1‑149 (MQ=255) aaaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGAATTCGTAACGTAGGTTTTCTCCCTCTCCCTGTGGTAGAGGGCCGGGGTGAGGGCATCAGCGAGAACGTtgacccacc > 1:2523865/1‑147 (MQ=38) aaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCCCGTtcaccccccc > 2:1800085/1‑146 (MQ=255) cgggCGTTTTCCAAAAAAGGTCTGGCCGTACGACCCGGCAAATACTGCCCCTCCGCGCCGGACTAAAAATTTTTCGTATGTTTGGTTTTAGCCCTCTCCCTGTGGTTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTtcaccctcacc < 2:905071/149‑1 (MQ=25) gCGTTATCCCAAACATGTCTGGCGGGACGACCCGGCAAATCCTGCACCGACGCGACGGACGAAAAAGTATTCTTACGTTTGGTTTTCTCCCTCGCCCTGTGGGTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTa < 2:2139288/150‑1 (MQ=38) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCACACCCCAAc > 2:403412/1‑150 (MQ=38) tATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATGCGAGCGGTAGGATTTCTCCCTCTCACTCTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCAGGTGCGCCGACCCCCAAAccc > 2:291385/1‑150 (MQ=25) acccaacaCATGTCTGTCCGTACGACCCGTCAAATACTGCACCTACGCGACGTACCAAAAAGTATTCTTAAGGTTGTTTTTCTCCCTTTCCCTGTGGTAGTGGGCGGGGGTTAGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCct < 2:266391/143‑1 (MQ=255) aTCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCACACCCCAAcccc > 1:2067068/1‑149 (MQ=38) aTCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACTAAATTGTATTCGTATGTTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCct < 2:533306/150‑1 (MQ=38) tCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCACACCCAAAaccac > 1:3464790/1‑148 (MQ=255) cccAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCCCACCCAAAcccaca > 1:222949/1‑147 (MQ=38) ccAAACATGTGGGGCCGGACGACCCGCCAAATACTGCACCGACGCGACGGACGAAAATTTATTCGTATGTTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCtctc < 2:3667539/150‑1 (MQ=37) aaattGTCTGGCCGGACGACCCGGAAAATCCTGCACCGCCGCGAGGCACGAAAAATTTTTGTTATGGTTGTTTTTCGCCCTCGCCCTGGGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCt < 2:1935858/146‑1 (MQ=255) acttGTCTGGCCGGACGACCCGGCAAATCCTCAACCGCCGGGACGTACGAAAATTTTTTCGTATGTTTGGTTTTCTCCCTGTCCCGGTGGGATTGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCTCACCCTAACCCTCTCCCTc < 2:64665/147‑1 (MQ=25) tGTCGGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGTACGAAAACTTATTCTTAAGGTTGGTTTTCTCCCTCCCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAg < 2:2646141/150‑1 (MQ=38) gggCCGGACGACCGCGCCAATCCTGCCCCGACGCGCCGGACGAAAACGTATGCGTAGGTGTGGTTTTCGCCCTCTCCCTGGGGGATAGGGCCGGGGCGAGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgag < 2:4071859/149‑1 (MQ=255) ggCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAATTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGgaga < 2:3634138/150‑1 (MQ=255) ccGGACGCCCCGCAAAATCCTCCCCCGCCGCGACGGCCGAAAAAGTATTCGTATGTTTGTTTTTCCCCCTCTCCCTGTGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgg < 1:3060765/150‑1 (MQ=255) gtacgacCGCGCAACTACTGCACCCACGCGACGCACCAACATTTATTCGTATGCTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGAGGGAATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgggg < 2:4021396/148‑1 (MQ=25) ggccgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTACGGTTGGTTTTCCCCCACTCCCTGTGGGAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgggg < 2:2375769/147‑1 (MQ=255) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCAACCTCAACCTAACCCACAACCACCAGGGAGAgggg > 2:2249975/1‑150 (MQ=37) ggACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCACCCAAACCCACACCCGCCAgggggggggg > 2:480997/1‑150 (MQ=37) cgacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTGCACCCGCACCCGAACCCACTACCGCAAGGGCGGGGGGGcc > 2:2372432/1‑150 (MQ=37) cgacCCGGCAAAGACGGCCCCGCCGCGCCGCCCGAAACAGTATTCGTACGGTTGGTTGACTCCCGCGCCCTGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 2:3092104/150‑1 (MQ=37) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGCCCCGAACCCAAAACCACACCCGCAAGGGGGGGGGGGccc > 1:308239/1‑149 (MQ=25) ccGGCCACTCCTGCACCGCCGCCACGGACGAAAAAGTATTCGCAAGGGTGGTGTTCGCCCCCTCCCGGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:2626686/150‑1 (MQ=255) ccGGCAAATACTGCACCGACGCGCCGTACTAAAAAGTATTCTTATGGTTTGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:4129016/150‑1 (MQ=38) ccGCCAATTCCTGCCCCGCCGCGCCGCACTACAATGTATGCGTCTGGTGGTTTTCCCCCCCCGCCGTGGGGTTGTGGCCCGGGGTGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTANCCCTCTCCCTCAAGGGAGAGGGGACCGATc < 1:3859573/150‑1 (MQ=255) aTACCGCACCGACGCGACGGACGAAATAGTATTCGTAAGGTTGTTTTTCTCCCTCTCCCTGGGGGAGAGGCCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑caca < 2:3098448/150‑1 (MQ=39) cggCACCGACGCGAGGTACTAAAATTTATTCGTTCGTTTGTTTTACTCCCTCTCCGTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAAt < 1:3719647/148‑1 (MQ=37) tGCACCCACGCGCCGGACGAAAATGTATTCGTATGGTTGTTTTTCTCCCTCGCCCTGTGGGTGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAAtt < 1:4089260/150‑1 (MQ=255) gccACCGCCGCGCCGGACGAAAATTTATTCGTTTGTTTGTTTTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAAtt < 1:1378106/148‑1 (MQ=37) cccACCGACGCGCCGTCCGAAAACGTATTCGTATGGTTGGTTTTCCCCCTCCCCGTGTGGGAGTGGCCCGGGGTTCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAAtt < 2:3229202/148‑1 (MQ=255) cgcgacgTACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTATCCCTGTGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTgagaga < 2:586526/150‑1 (MQ=255) cgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTgagaga < 2:3933966/150‑1 (MQ=255) cgcgacgGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTGTCCCGCACCCCAACCCACGCCCCCCAAGGAGAGGGGCCCGAGCGA‑‑GCCCACAAAttttttga > 1:478624/1‑146 (MQ=21) gcgacgGACGAAAAAGTATTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACACTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGat < 2:3821151/150‑1 (MQ=255) cgacgGACGAAAAAGTATTGTTAAGGTGGTTTTACCCCCTCTCCCTGGGGGTTTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGata < 1:850259/150‑1 (MQ=255) cggactAAAATGTATTCGTACGGTTGGTTTTCTCCCGCGCCCGGGGGGTGCGGGCCGGGGGGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATAtct < 2:1893807/150‑1 (MQ=255) cggacgAAAATGTATTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGTATAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATAtct < 2:1893887/150‑1 (MQ=39) ggacgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCACACCCAAAACCAAAACCCCAACGGAGAGGGGCCCCCTAGAGCG‑‑CACAAATTGTGAGAAatcat > 1:2733135/1‑147 (MQ=16) acgAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCCCACCCAAAACCCCTCCCACCAAGGGGAGGGGACCGCTAGA‑‑C‑‑CCCAAATTTTTAGGGataaaatat > 2:3037766/1‑144 (MQ=21) aaaaTTTTTCGTATTGTTGTTTTTCGCCCCCTCCCTGGGGTTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTg < 1:3896154/150‑1 (MQ=255) aatttATTCGTATGGTTGGTTTTCTCCATCTCCCGGTGGTAGTGGGCCGGGGTGAGGTCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGt < 1:3645563/146‑1 (MQ=255) aaaGTTTTCGTTAGGTTGGTTTTCGCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGt < 2:3586527/150‑1 (MQ=255) tcgtttggtgggttTTCCCCCTCTCCGGGGGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 1:1158076/144‑1 (MQ=255) tCGTATGGTTGGTTTCCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 2:434909/150‑1 (MQ=255) tCGTAAGGTTGGTTTTCGCCCTCGCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTaa < 2:434952/150‑1 (MQ=255) cttAAGTTTGTTTTTCTCCCTCTCCCTGTGGGATAGGGCCTGGGTGAGGGCATCAGCGCTCACGTTCACCCTCACCATAACCCTCTCCCTCAAGGGAGAGGGGACCTATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 2:225581/148‑1 (MQ=38) gTAAGGTTGGTTTACTCCCTCCCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACa < 2:1038041/150‑1 (MQ=255) tggttggttTTCTCCCTCTCCCGGTGGGAGAGGGCCGGGGTTTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaa < 1:4161521/149‑1 (MQ=255) aGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCACACCCCAAACCGCACCCGCAAGGGGGAGGGGGCCGATCGG‑‑G‑‑CCCCAAATTTGAGTGATTTATTGTTATGTGTTGTAgaagaa > 2:2269029/1‑150 (MQ=12) ggttggttTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCGGTCTTGTAACagaag < 2:1205734/150‑1 (MQ=255) ggttggttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag < 2:2538124/150‑1 (MQ=255) ggttggttTTCTCCCAATCCCTGTGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaag < 2:2346695/150‑1 (MQ=255) tgggttTTCTCCCTCTCCCTTTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCATCTACCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAgaagaa < 2:3477434/148‑1 (MQ=255) gtttttCTCCCTCTCCCTGGGGGAGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACa < 1:3278955/148‑1 (MQ=255) gttGTCCCCCCCCCCGTGGGGGTGTGGGCGGGGGTGAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAg < 1:2851953/150‑1 (MQ=255) ttttCGCCCACTCCCTGTGGGAGCGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGa < 1:170851/150‑1 (MQ=255) tgttCCCCCTCTCCCGGGGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGa < 1:272498/148‑1 (MQ=255) ttCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGAATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaa < 2:636273/150‑1 (MQ=255) ccctctccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCACCCCAACCCACACCCACCAAGGGGAGGGGGCCGCAAGA‑‑G‑‑CACAAAAATTTTGAGATATATTATTGTGTGTTGTAAAAAAAGAAAAAAAAAACg > 2:780006/1‑150 (MQ=12) ccctGTGGGCGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 1:2564564/150‑1 (MQ=255) ccctGGGGGTGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 1:3008855/150‑1 (MQ=255) cggtgGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttta < 2:486370/148‑2 (MQ=255) ggAGTGGGCGGGGGGGCGGCCATCAGCGCGCCCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACCAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 2:1126784/150‑1 (MQ=255) gggCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:1550079/150‑1 (MQ=255) ggCCGGGGTGCGGGCATCAGCGCGCACGGTCACCCTCACCCGAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTCTGAGAGATATCTTCTTCTGTATTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 2:1650487/150‑1 (MQ=255) ggCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAatat < 2:47332/150‑1 (MQ=255) ccGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTg < 2:845634/150‑1 (MQ=255) cGGGGTGAGGGCATCAGCGCGCACGTTCACCCACACCCGAAACCACACCCACAAGGGGGAGGGGCCCCAAAGA‑‑G‑‑CCCCAAATTTTTGAGATATATTATTATTTATTGTAACAGAAGAAAACAAAAACTGGCGATTGGGCCGGaaaaattc > 2:3384160/1‑144 (MQ=255) gggTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCgg < 1:2478777/150‑1 (MQ=255) gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTTAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 2:3681884/150‑1 (MQ=255) gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 1:2713590/150‑1 (MQ=255) ggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaaa < 2:1228842/150‑1 (MQ=255) gCATCAGCGCGCACGTTCACCCTCTCCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAg < 2:2378801/150‑1 (MQ=255) | CCGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGA‑‑G‑‑CACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAG > CP009273/160919‑161215 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |