Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 1,999,632 G→T 100% intergenic (+73/‑5) fliT → / → amyA putative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092731,999,6320GT97.0% 761.8 / 13.5 230intergenic (+73/‑5)fliT/amyAputative flagellar synthesis and assembly chaperone/cytoplasmic alpha‑amylase
Reads supporting (aligned to +/- strand):  ref base G (4/3);  new base T (99/124);  total (103/127)
Fisher's exact test for biased strand distribution p-value = 7.03e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.33e-01
Rejected as polymorphism: Frequency below/above cutoff threshold.

Only 100 of 237 total aligned reads displayed.

GTGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTGCCGCCCGCCTATAAAGGCG  >  CP009273/1999485‑1999778
                                                                                                                                                   |                                                                                                                                                  
gTGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCtaa                                                                                                                                                  >  1:3713577/1‑150 (MQ=255)
 tGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCtaag                                                                                                                                                 >  2:3779506/1‑150 (MQ=255)
   cAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCtaagaa                                                                                                                                               >  2:1006640/1‑150 (MQ=255)
     aaaaTCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATg                                                                                                                                             >  1:2327012/1‑150 (MQ=255)
      aaaTCGGTGTTAAGTGCCTATGGCGATCAGGGAGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGATTCGATGTCTCGCGAATAATCCGATTACGGCTACTCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGc                                                                                                                                            >  1:302617/1‑150 (MQ=255)
         tCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTa                                                                                                                                         <  1:3952158/150‑1 (MQ=255)
                tAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCAc                                                                                                                                  <  2:3860844/150‑1 (MQ=255)
                  aGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGc                                                                                                                                >  1:1422422/1‑150 (MQ=255)
                   gTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCt                                                                                                                               >  2:814046/1‑150 (MQ=255)
                    tGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTg                                                                                                                              >  2:306024/1‑150 (MQ=255)
                     gCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGt                                                                                                                             <  1:848389/150‑1 (MQ=255)
                      ccTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGACTGCGTAATCCCACGCTGtt                                                                                                                            <  2:1724687/150‑1 (MQ=255)
                      ccTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTAGAGAATAATCCGATTACGGCTACGCTTCTAATTTTCCCCTTGAATGGAGTCTAAGAATGCGTAATACCACGCTGtt                                                                                                                            <  2:325714/150‑1 (MQ=255)
                       cTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTa                                                                                                                           >  1:1543317/1‑150 (MQ=255)
                        tATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTaa                                                                                                                          >  1:11787/1‑149 (MQ=255)
                        tATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTAc                                                                                                                          >  1:2748435/1‑150 (MQ=255)
                         aTGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACa                                                                                                                         <  2:718333/150‑1 (MQ=255)
                         aTGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACa                                                                                                                         >  2:2128079/1‑150 (MQ=255)
                         aTGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACa                                                                                                                         <  1:2130764/150‑1 (MQ=255)
                           ggCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAAt                                                                                                                       <  1:2832066/150‑1 (MQ=255)
                             cGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGt                                                                                                                     >  2:3393346/1‑150 (MQ=255)
                              gATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGtt                                                                                                                    >  1:3083295/1‑150 (MQ=255)
                              gATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGtt                                                                                                                    >  2:495337/1‑150 (MQ=255)
                               aTCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGttt                                                                                                                   <  2:3428852/150‑1 (MQ=255)
                                 cAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTc                                                                                                                 <  1:2298739/150‑1 (MQ=255)
                                  aGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCa                                                                                                                >  1:3633515/1‑150 (MQ=255)
                                       ggcTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGt                                                                                                           >  2:3266656/1‑150 (MQ=255)
                                       ggcTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGt                                                                                                           >  1:2409990/1‑150 (MQ=255)
                                        gcTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTCCAATGTTTTCACTGGTa                                                                                                          >  2:2507141/1‑150 (MQ=255)
                                          tttGTGCTGTCTCCGCAGGATTACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATACTCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAATGCTTAATCCCACGCTGTTACAATGTTTTCACTGGTAtt                                                                                                        <  1:2629923/150‑1 (MQ=255)
                                          tttGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTAtt                                                                                                        <  2:1584286/150‑1 (MQ=255)
                                             gtgCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTAcc                                                                                                     <  2:1566198/150‑1 (MQ=255)
                                             gtgCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTAcc                                                                                                     <  2:826284/150‑1 (MQ=255)
                                             gtgCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTAcc                                                                                                     <  1:2047905/150‑1 (MQ=255)
                                               gCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCg                                                                                                   >  1:1559592/1‑150 (MQ=255)
                                               gCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCg                                                                                                   <  1:3900593/150‑1 (MQ=255)
                                                 tGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGa                                                                                                 <  2:1467216/150‑1 (MQ=255)
                                                  ggCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGaa                                                                                                <  1:2118746/150‑1 (MQ=255)
                                                   gCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAg                                                                                               >  1:2248673/1‑150 (MQ=255)
                                                     tCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGc                                                                                             <  1:1873390/150‑1 (MQ=255)
                                                       cGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCgg                                                                                           <  2:4094832/150‑1 (MQ=255)
                                                        gCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGt                                                                                          <  1:3230871/150‑1 (MQ=255)
                                                          aGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTaa                                                                                        >  1:1386999/1‑150 (MQ=255)
                                                          aGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTaa                                                                                        >  2:2933444/1‑150 (MQ=255)
                                                             aTAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGct                                                                                     >  2:2246418/1‑150 (MQ=255)
                                                              tAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGctc                                                                                    >  2:500479/1‑150 (MQ=255)
                                                                aCCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTg                                                                                  <  2:2772934/150‑1 (MQ=255)
                                                                 ccTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTgg                                                                                 >  1:349781/1‑150 (MQ=255)
                                                                  ctctTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGc                                                                                <  1:1872642/150‑1 (MQ=255)
                                                                    ctTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCt                                                                              <  1:2560029/150‑1 (MQ=255)
                                                                    ctTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCt                                                                              <  1:3365166/150‑1 (MQ=255)
                                                                      tttGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGa                                                                            <  2:3631219/150‑1 (MQ=255)
                                                                        tGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAAc                                                                          >  2:2736249/1‑150 (MQ=255)
                                                                        tGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAAc                                                                          <  2:2708513/150‑1 (MQ=255)
                                                                         gAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACt                                                                         <  2:1112440/150‑1 (MQ=255)
                                                                         gAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACt                                                                         <  1:1146829/150‑1 (MQ=255)
                                                                         gAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACt                                                                         >  2:2823234/1‑150 (MQ=255)
                                                                           aTCTGATTGAGTCGTTGGCTAGCGAATACTCCTTTGACTGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTTCGCGGAAGGCGGTAAGCTCTGGCCTGACCTgg                                                                       <  2:2132794/150‑1 (MQ=255)
                                                                            tCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGc                                                                      <  2:2797032/150‑1 (MQ=255)
                                                                            tCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGc                                                                      <  2:2621630/150‑1 (MQ=255)
                                                                                  tGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAgcg                                                                >  1:2000617/1‑150 (MQ=255)
                                                                                     gTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAgcgcgc                                                             >  1:2867066/1‑150 (MQ=255)
                                                                                      tCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGcc                                                            <  1:1258811/150‑1 (MQ=255)
                                                                                      tCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGcc                                                            <  1:4136754/150‑1 (MQ=255)
                                                                                      tCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGcc                                                            <  1:586767/150‑1 (MQ=255)
                                                                                       cGATGGCTCGCGAATAATCCGATTACGTCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTTTTACAATGTTTTCTCTTGTATTACCCGGAAGGCGGTTAGCTCTGGCCTGAACTGGCCGAGCGCGCCg                                                           <  1:3918596/150‑1 (MQ=255)
                                                                                       cGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCg                                                           <  1:248638/150‑1 (MQ=255)
                                                                                        gATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGa                                                          >  1:370651/1‑150 (MQ=255)
                                                                                         aTGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGAc                                                         <  2:2557171/150‑1 (MQ=255)
                                                                                         aTGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGAc                                                         >  2:1280675/1‑150 (MQ=255)
                                                                                             cTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGtt                                                     <  2:3757340/150‑1 (MQ=255)
                                                                                               cgcgAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGtttt                                                   <  2:1821666/150‑1 (MQ=255)
                                                                                                gcgAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTa                                                  <  2:3329101/150‑1 (MQ=255)
                                                                                                 cgAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTaa                                                 <  1:1153026/150‑1 (MQ=255)
                                                                                                   aataatCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATg                                               >  2:1598360/1‑150 (MQ=255)
                                                                                                       atCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGatat                                           >  2:1341045/1‑150 (MQ=255)
                                                                                                          cGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTgg                                        >  2:2860237/1‑150 (MQ=255)
                                                                                                          cGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTgg                                        >  1:1122204/1‑150 (MQ=255)
                                                                                                          cGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTgg                                        >  1:1122216/1‑150 (MQ=255)
                                                                                                           gATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGt                                       >  2:1947949/1‑150 (MQ=255)
                                                                                                           gATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGt                                       >  1:1326734/1‑150 (MQ=255)
                                                                                                           gATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGt                                       <  1:1472872/150‑1 (MQ=255)
                                                                                                            aTTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTa                                      <  1:1909144/150‑1 (MQ=255)
                                                                                                              tACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATc                                    <  2:3476407/150‑1 (MQ=255)
                                                                                                              tACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATc                                    >  2:3217116/1‑150 (MQ=255)
                                                                                                                    tACGCTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATg                              >  1:1476795/1‑150 (MQ=255)
                                                                                                                        cTTCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCt                          >  1:68174/1‑150 (MQ=255)
                                                                                                                         ttCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTg                         <  2:2216587/150‑1 (MQ=255)
                                                                                                                         ttCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTg                         <  1:3218190/150‑1 (MQ=255)
                                                                                                                         ttCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTg                         <  1:3148772/150‑1 (MQ=255)
                                                                                                                          tCTAATGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTgg                        <  2:1420058/150‑1 (MQ=255)
                                                                                                                             aaTGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTg                     >  2:799666/1‑150 (MQ=255)
                                                                                                                               tGTTCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTgcc                   >  2:3913796/1‑150 (MQ=255)
                                                                                                                                gTTCCCCTTGACTGGAGTCTAAGAATGCGTAAGCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTgccg                  <  2:2585150/150‑1 (MQ=255)
                                                                                                                                  tCCCCTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTgccgcc                >  1:1055471/1‑150 (MQ=255)
                                                                                                                                    cccTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTGccgcccg              >  2:49275/1‑150 (MQ=255)
                                                                                                                                    cccTTGAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTGccgcccg              <  1:2657507/150‑1 (MQ=255)
                                                                                                                                         gAATGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTGCCGCCCGCCtat         >  1:1686928/1‑150 (MQ=255)
                                                                                                                                           aTGGAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTGCCGCCCGCCTATaa       >  2:615297/1‑150 (MQ=255)
                                                                                                                                              gAGTCTAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTGCCGCCCGCCTATAAAgg    >  2:1293985/1‑150 (MQ=255)
                                                                                                                                                   |                                                                                                                                                  
GTGCAAAAATCGGTGTTAAGTGCCTATGGCGATCAGGGCGGCTTTGTGCTGGCTCCGCAGGATAACCTCTTTTGAATCTGAATGAGTCGATGGCTCGCGAATAATCCGATTACGGCTACGCTTCTAATGTTCCCCTTGAATGGAGTCGAAGAATGCGTAATCCCACGCTGTTACAATGTTTTCACTGGTATTACCCGGAAGGCGGTAAGCTCTGGCCTGAACTGGCCGAGCGCGCCGACGGTTTTAATGATATTGGTATCAATATGGTCTGGTTGCCGCCCGCCTATAAAGGCG  >  CP009273/1999485‑1999778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: