Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 2,096,834 C→A 6.0% pseudogene (37/446 nt) wbbL ← lipopolysaccharide biosynthesis protein, N‑ter fragment (pseudogene)

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092732,096,8340CA 6.0% 837.2 / 21.5 217pseudogene (37/446 nt)wbbLlipopolysaccharide biosynthesis protein, N‑ter fragment (pseudogene)
Reads supporting (aligned to +/- strand):  ref base C (87/117);  new base A (3/10);  total (90/127)
Fisher's exact test for biased strand distribution p-value = 2.46e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.91e-01

Only 100 of 219 total aligned reads displayed.

AAAGCCGTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTG  >  CP009273/2096685‑2096983
                                                                                                                                                     |                                                                                                                                                     
aaaGCCGTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCAGGCATATTAGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCATGTAGTGCTCATCGTCAGCATTCAGATTTTCGAGTAATTTTTTGATGTAGTc                                                                                                                                                       >  1:1996592/1‑150 (MQ=255)
  aGCCGTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCtt                                                                                                                                                     <  1:294324/150‑1 (MQ=255)
  aGCCGTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCtt                                                                                                                                                     <  1:2252024/150‑1 (MQ=255)
     cGTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCAt                                                                                                                                                  >  2:2463565/1‑150 (MQ=255)
     cGTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCAt                                                                                                                                                  <  1:653486/150‑1 (MQ=255)
     cGTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCAt                                                                                                                                                  <  2:3674004/150‑1 (MQ=255)
      gTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATg                                                                                                                                                 >  2:3343824/1‑150 (MQ=255)
      gTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATg                                                                                                                                                 >  2:3343835/1‑150 (MQ=255)
       tataCACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGt                                                                                                                                                >  1:321668/1‑150 (MQ=255)
        ataCACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTc                                                                                                                                               <  1:1208134/150‑1 (MQ=255)
        ataCACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTc                                                                                                                                               >  1:1450101/1‑150 (MQ=255)
          acacCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCg                                                                                                                                             >  1:508725/1‑150 (MQ=255)
              cTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTggg                                                                                                                                         >  2:3744407/1‑150 (MQ=255)
                ccACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGaa                                                                                                                                       <  2:3443479/150‑1 (MQ=255)
                 cACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCATCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGaaa                                                                                                                                      <  2:1835350/150‑1 (MQ=255)
                  aCTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAAc                                                                                                                                     <  2:418623/150‑1 (MQ=255)
                    tAATATAGTCCAGGCCTGCATAATGATGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTAGCGTACGATAATCATGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGa                                                                                                                                   >  1:1159077/1‑150 (MQ=255)
                     aaTATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGat                                                                                                                                  >  1:2718645/1‑150 (MQ=255)
                     aaTATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGat                                                                                                                                  >  1:998535/1‑150 (MQ=255)
                      atatAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGatt                                                                                                                                 <  2:2620886/150‑1 (MQ=255)
                       tataGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGatta                                                                                                                                <  1:907048/150‑1 (MQ=255)
                           gTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATtattat                                                                                                                            <  2:569211/150‑1 (MQ=255)
                              cAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATtatata                                                                                                                         >  1:2506703/1‑150 (MQ=255)
                                 gCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATAc                                                                                                                      <  1:7097/150‑1 (MQ=255)
                                       aTAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTc                                                                                                                <  2:4018088/150‑1 (MQ=255)
                                        tAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCa                                                                                                               >  2:1581833/1‑150 (MQ=255)
                                        tAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCa                                                                                                               >  2:3201561/1‑150 (MQ=255)
                                             cTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGtt                                                                                                          >  1:58232/1‑150 (MQ=255)
                                             cTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGtt                                                                                                          >  2:3008168/1‑150 (MQ=255)
                                               ggCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGttct                                                                                                        <  1:251127/150‑1 (MQ=255)
                                                gCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGttctt                                                                                                       <  1:1366549/150‑1 (MQ=255)
                                                gCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGttctt                                                                                                       <  2:1099341/150‑1 (MQ=255)
                                                   tatTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAg                                                                                                    >  1:4084530/1‑150 (MQ=255)
                                                      ttGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGtaa                                                                                                 <  1:1690160/150‑1 (MQ=255)
                                                        gTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGtaata                                                                                               >  1:1010384/1‑150 (MQ=255)
                                                         tttCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTANATATACCATTTCAATGTTCTTCAGtaataa                                                                                              <  1:3853983/150‑1 (MQ=255)
                                                          ttCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATaaa                                                                                             >  2:4143362/1‑150 (MQ=255)
                                                          ttCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATaaa                                                                                             >  2:295894/1‑150 (MQ=255)
                                                             aataatAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAAtt                                                                                          >  1:3389569/1‑150 (MQ=255)
                                                             aataatAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATAGTCAGCATTAATATTTTCGAGTAATTTATTGATGTAGTCTTCATGAACGTGGGAAACGATTATTATATATACCATTTCAATGTTATTCAGTAATAAAAtt                                                                                          >  1:935493/1‑150 (MQ=255)
                                                              ataataGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTa                                                                                         >  1:2312890/1‑150 (MQ=255)
                                                               taataGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTaa                                                                                        >  1:3875712/1‑150 (MQ=255)
                                                                 ataGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACt                                                                                      <  2:3687607/150‑1 (MQ=255)
                                                                  taGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTa                                                                                     <  1:700263/150‑1 (MQ=255)
                                                                  taGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTa                                                                                     >  2:1739428/1‑150 (MQ=255)
                                                                  taGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTa                                                                                     <  1:2780359/150‑1 (MQ=255)
                                                                     agagTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGtt                                                                                  <  1:1292110/150‑1 (MQ=255)
                                                                      gagTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTtc                                                                                 <  1:3117200/150‑1 (MQ=255)
                                                                      gagTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTtc                                                                                 <  2:4031626/150‑1 (MQ=255)
                                                                        gTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTtcat                                                                               >  2:2304871/1‑150 (MQ=255)
                                                                        gTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTtcat                                                                               <  2:355458/150‑1 (MQ=255)
                                                                          cTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTtcatca                                                                             <  1:3480253/150‑1 (MQ=255)
                                                                           tttGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCaa                                                                            <  1:1852669/150‑1 (MQ=255)
                                                                             tgttgtCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAAc                                                                          >  1:627784/1‑150 (MQ=255)
                                                                              gttgtCGCGTACGATAATCTTGTAGTGCTCCTCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAAcc                                                                         >  2:2181819/1‑150 (MQ=255)
                                                                              gttgtCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAAcc                                                                         <  1:307246/150‑1 (MQ=255)
                                                                              gttgtCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAAcc                                                                         >  2:2740125/1‑150 (MQ=255)
                                                                              gttgtCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAAcc                                                                         >  2:1950092/1‑150 (MQ=255)
                                                                                 gtCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCaa                                                                      <  2:1954803/150‑1 (MQ=255)
                                                                                 gtCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCaa                                                                      <  2:2020396/150‑1 (MQ=255)
                                                                                      gTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAAt                                                                 <  1:3334206/150‑1 (MQ=255)
                                                                                       tACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATa                                                                <  1:792514/150‑1 (MQ=255)
                                                                                        aCGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATAc                                                               <  2:1225755/150‑1 (MQ=255)
                                                                                          gATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACAt                                                             >  2:2061803/1‑150 (MQ=255)
                                                                                           aTAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACAtt                                                            <  2:3276377/150‑1 (MQ=255)
                                                                                             aaTCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACAtttt                                                          <  2:3630778/150‑1 (MQ=255)
                                                                                             aaTCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACAtttt                                                          >  2:3485608/1‑150 (MQ=255)
                                                                                               tCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCa                                                        >  2:2800369/1‑150 (MQ=255)
                                                                                               tCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCa                                                        >  2:711742/1‑150 (MQ=255)
                                                                                                cTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCAt                                                       <  1:881204/150‑1 (MQ=255)
                                                                                                    tAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATAGATACCATTTCAAAGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACg                                                   >  2:338808/1‑150 (MQ=255)
                                                                                                       tGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTATTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATa                                                <  1:3778273/150‑1 (MQ=255)
                                                                                                        gCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATaa                                               <  1:3428793/150‑1 (MQ=255)
                                                                                                         cTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATaaa                                              <  1:1490910/150‑1 (MQ=255)
                                                                                                             tCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCGTGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGaa                                          >  2:2668889/1‑150 (MQ=255)
                                                                                                                     aTTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCAt                                  <  1:2109529/150‑1 (MQ=255)
                                                                                                                     aTTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCAt                                  <  2:2891225/150‑1 (MQ=255)
                                                                                                                      ttAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATc                                 <  2:723004/150‑1 (MQ=255)
                                                                                                                      ttAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATc                                 <  1:3053637/150‑1 (MQ=255)
                                                                                                                       tAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCa                                >  2:1176948/1‑150 (MQ=255)
                                                                                                                        aaGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCag                               >  2:1873169/1‑150 (MQ=255)
                                                                                                                         aGATTTTCGAGTAATTTTTTGATGTAGTATTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCaga                              >  2:3804252/1‑150 (MQ=255)
                                                                                                                          gATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTAGGTTAAATGAAATTTGCATCagag                             <  2:1388958/150‑1 (MQ=255)
                                                                                                                           aTTTTCGAGTAATTTTTTGATGTAGTATTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAgaga                            >  2:2976586/1‑150 (MQ=255)
                                                                                                                           aTTTTCGAGTAATTTTTTGATGTAGTATTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAgaga                            <  1:288153/150‑1 (MQ=255)
                                                                                                                           aTTTTCGAGTAATTTTTTGATGTAGTATTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAgaga                            <  1:288445/150‑1 (MQ=255)
                                                                                                                             tttCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGata                          >  1:4162753/1‑150 (MQ=255)
                                                                                                                               tCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCTACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATc                        >  1:3525975/1‑150 (MQ=255)
                                                                                                                                cGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCt                       <  2:184196/150‑1 (MQ=255)
                                                                                                                                 gAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCtt                      <  2:4022403/150‑1 (MQ=255)
                                                                                                                                    tAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCttttt                   <  1:97599/150‑1 (MQ=255)
                                                                                                                                      aTTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTg                 <  2:2094434/150‑1 (MQ=255)
                                                                                                                                       ttttttGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGa                <  2:517852/150‑1 (MQ=255)
                                                                                                                                       ttttttGATGTAGTATTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGa                <  1:3606440/150‑1 (MQ=255)
                                                                                                                                           ttGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGtt            <  2:2398057/150‑1 (MQ=255)
                                                                                                                                           ttGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGtt            <  2:315672/150‑1 (MQ=255)
                                                                                                                                                gTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCtt       >  2:2871382/1‑150 (MQ=255)
                                                                                                                                                gTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCtt       >  2:630519/1‑150 (MQ=255)
                                                                                                                                                   gTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACGAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCttttt    <  1:3935073/150‑1 (MQ=255)
                                                                                                                                                    tCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCtttttt   <  1:1230757/150‑1 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
AAAGCCGTATACACCTCCACTAATATAGTCCAGGCCTGCATAATGCTGGCATATTTGTTTCAATAATAGAGAGTCTTTGTTGTCGCGTACGATAATCTTGTAGTGCTCATCGTCAGCATTAAGATTTTCGAGTAATTTTTTGATGTAGTCTTCATGTCCGTGGGAAACGATTATTATATATACCATTTCAATGTTCTTCAGTAATAAAATTAACTAGTTCATCAAACCCAACTAATACATTTTCATTACGATAAATGAAATTTGCATCAGAGATATCTTTTTTGAGGTTACCTTTTTTG  >  CP009273/2096685‑2096983

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: