| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,102,786 | C→T | 44.0% | V94I (GTT→ATT) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,102,786 | 0 | C | T | 44.0% | 130.6 / inf | 232 | V94I (GTT→ATT) | wzxB | putative polisoprenol‑linked O‑antigen transporter |
| Reads supporting (aligned to +/- strand): ref base C (71/59); new base T (64/38); total (135/97) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.30e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 234 total aligned reads displayed.
TTTTTCTTTTCCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAA > CP009273/2102637‑2102933 | tttttCTTTTCCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAAc < 1:4125175/150‑1 (MQ=255) tcttttcCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAattatt < 1:1690961/150‑1 (MQ=255) cttttcCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTAttt > 2:3998396/1‑150 (MQ=255) ttttcCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTAtttt < 2:2349645/150‑1 (MQ=255) tcCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGa > 2:1763742/1‑150 (MQ=255) cTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGaaaa > 1:896911/1‑150 (MQ=255) tGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAat > 2:31262/1‑150 (MQ=255) gAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAata > 2:751009/1‑150 (MQ=255) gAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAata < 1:2037115/150‑1 (MQ=255) gAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAata < 1:1690535/150‑1 (MQ=255) aaaCAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAatat < 2:3768256/150‑1 (MQ=255) aaCAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATc > 1:1580623/1‑150 (MQ=255) aCAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCa < 2:3582744/150‑1 (MQ=255) aCAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCa > 1:3656059/1‑150 (MQ=255) gATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑a > 1:3656074/1‑150 (MQ=255) gggTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑aaaaa > 1:3022365/1‑150 (MQ=255) gTAGATTAAATTCCCGACTAATGCAGTAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAAt < 1:2248350/150‑1 (MQ=255) gTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAAt > 1:1976131/1‑150 (MQ=255) tataTTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATa < 1:3257015/147‑1 (MQ=255) tAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATa > 1:534774/1‑150 (MQ=255) tAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATa < 2:338293/150‑1 (MQ=255) gATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGa > 1:1879332/1‑150 (MQ=255) aTTAAATTCCCGACTAATGCAGTAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGAc < 1:2493985/150‑1 (MQ=255) tAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGt < 1:1323936/150‑1 (MQ=255) aaaTTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGtt > 2:3979724/1‑150 (MQ=255) aTTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTAc > 1:1328124/1‑150 (MQ=255) ttCCCTACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGATTTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACt < 1:3829344/150‑1 (MQ=255) cccTACTATTGAAGTAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACttt < 1:1101529/150‑1 (MQ=255) cccGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACttt < 2:1409497/150‑1 (MQ=255) tAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCttt > 1:2086166/1‑150 (MQ=255) aTGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTAc > 1:4118558/1‑150 (MQ=255) aTGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTAc < 2:3031895/150‑1 (MQ=255) aGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATc > 2:1529828/1‑150 (MQ=255) aGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATc > 2:484146/1‑150 (MQ=255) aaaaaCGAAAATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATctgct < 1:718515/148‑1 (MQ=255) cAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATctgctg > 1:1002906/1‑150 (MQ=255) cAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATctgctg > 2:3474651/1‑150 (MQ=255) aaaCGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCtgctgc > 1:2107935/1‑150 (MQ=255) aCGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCtt < 1:692202/150‑1 (MQ=255) aCGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCtt < 1:554908/150‑1 (MQ=255) cGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCttt < 1:1716326/150‑1 (MQ=255) cATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCa > 2:2715806/1‑150 (MQ=255) aaTTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATAct > 1:3537300/1‑150 (MQ=255) ttACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATActct > 2:3206274/1‑150 (MQ=255) tACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTg > 2:3417771/1‑150 (MQ=255) gaaTGATTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGtt < 2:1143072/148‑1 (MQ=255) gCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGtt < 1:1496906/150‑1 (MQ=255) gCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGtt > 2:1675423/1‑150 (MQ=255) cATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTg > 1:72921/1‑150 (MQ=255) aTGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGc > 2:1893539/1‑150 (MQ=255) tGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCt < 1:419737/150‑1 (MQ=255) gCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCtg > 2:2082950/1‑150 (MQ=255) tGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTga < 1:1477025/150‑1 (MQ=255) ttATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTgaga > 2:2395604/1‑150 (MQ=255) ttATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTgaga < 1:641911/150‑1 (MQ=255) tataTTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGAt < 2:3970586/150‑1 (MQ=255) atatTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGAtt < 1:1383061/150‑1 (MQ=255) tatTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTg > 1:993854/1‑150 (MQ=255) atTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGa > 1:3068395/1‑150 (MQ=255) atTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGATTTGGCAATACTCTGAGTTGCTGTGAGATTGa > 2:1172806/1‑150 (MQ=255) cAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAAc > 1:3642374/1‑150 (MQ=255) ggAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCa < 1:2810720/150‑1 (MQ=255) caagcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATAtt < 2:3695179/150‑1 (MQ=255) aagcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTc > 2:1616183/1‑150 (MQ=255) aagcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTc > 2:2044230/1‑150 (MQ=255) aagcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTc > 2:3388629/1‑150 (MQ=255) agcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTca < 2:3299155/150‑1 (MQ=255) aagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTcaaca < 2:2929164/150‑1 (MQ=255) agGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTcaacaa > 2:3868417/1‑150 (MQ=255) ggTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCaacaaa > 2:3466173/1‑150 (MQ=255) gTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCaacaaac < 1:3722781/150‑1 (MQ=255) cATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACAt < 1:3396766/150‑1 (MQ=255) cATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACAt > 1:3753610/1‑150 (MQ=255) cATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACAt < 1:2678715/150‑1 (MQ=255) tCGACGTTAAGAAAATAAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑‑AAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTAt < 2:1344084/150‑1 (MQ=255) cGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTAt > 2:2471275/1‑150 (MQ=255) gACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATc > 2:2977507/1‑150 (MQ=255) gACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATc < 2:3574361/150‑1 (MQ=255) gACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATc > 1:3729651/1‑150 (MQ=255) aCGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACATTATCTTTACTATCACCTGCTTTGGCACTACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACAATATCa > 1:256270/1‑150 (MQ=255) ttAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCCAAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCata > 2:4159316/1‑150 (MQ=255) ttAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCatat > 2:3644758/1‑150 (MQ=255) tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCatata < 2:715773/150‑1 (MQ=255) tAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCatata < 2:3406091/150‑1 (MQ=255) aaaaTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGc > 2:3457261/1‑150 (MQ=255) aaaTCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCa > 1:3778095/1‑150 (MQ=255) aaaTCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCa < 1:520014/150‑1 (MQ=255) tAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCtt > 1:2233417/1‑150 (MQ=255) aaTTACGATAAGAACTATATTTGAAAATATCACCGCCA‑AAAAAATAGACGTTACTTTATATTTAATATCTGATGCTTTGGCAATACTCTGAGTTGCTGTGAGATTTAAACCATATTAAAAAAACATAATCATATATAGAATAGTCGCttt > 1:1311027/1‑149 (MQ=255) aaTGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTg > 1:3404974/1‑150 (MQ=255) tGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGc > 2:228288/1‑150 (MQ=255) gACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCa > 2:627509/1‑150 (MQ=255) aCGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaa > 1:2368559/1‑150 (MQ=255) cGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaaa > 1:319600/1‑150 (MQ=255) gATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaaaa > 2:2126757/1‑150 (MQ=255) aTAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaaaaa > 2:3394545/1‑150 (MQ=255) aaGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGATGTTAGTTTGAAACCATATTCACCAAACATTATCATATATAGCATAGTCGCTTGGCAAAAAcc < 2:20574/150‑1 (MQ=255) aGAATTATTTTTGAAAATATCACCGCCC‑AANAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCg > 1:3851686/1‑150 (MQ=255) aGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCg > 1:2856527/1‑150 (MQ=255) aaCTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGaa > 1:2134239/1‑150 (MQ=255) | TTTTTCTTTTCCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAA > CP009273/2102637‑2102933 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |