| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,669,191 | G→T | 10.2% | R332S (CGC→AGC) | yphD ← | inner membrane putative ABC superfamily sugar transporter permease |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,669,191 | 0 | G | T | 10.2% | 818.2 / 47.2 | 224 | R332S (CGC→AGC) | yphD | inner membrane putative ABC superfamily sugar transporter permease |
| Reads supporting (aligned to +/- strand): ref base G (106/95); new base T (13/10); total (119/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01 | |||||||||||
Only 100 of 230 total aligned reads displayed.
TCCCCGGCGTCGGCACCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCAGCACACCAAGCA > CP009273/2669042‑2669340 | tCCCCGGCGTCGGCACCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCg > 2:3584489/1‑150 (MQ=255)tCCCCGGCGTCGGCACCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCg > 1:3225575/1‑150 (MQ=255)tCCCCGGCGTCGGCACCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCg < 2:482918/150‑1 (MQ=255) cGGCGTCGGCACCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTc < 2:2566269/150‑1 (MQ=255) cGTCGGCACCGCACCGTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCt < 2:25211/150‑1 (MQ=255) tCGGCACCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGGTTCGCttt > 2:468198/1‑150 (MQ=255) tCGGCACCGCAACTTCCCGCAGAGCGACGGTCGAATTTCCGGGTAAATCAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCttt < 2:2515847/150‑1 (MQ=255) cGGCACCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTa > 2:2787626/1‑150 (MQ=255) aCCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGc > 2:3984725/1‑150 (MQ=255) cGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCtt < 1:3980132/150‑1 (MQ=255) cAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCg > 2:3198706/1‑150 (MQ=255) cAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCg > 2:2598536/1‑150 (MQ=255) aCTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCt > 2:1606399/1‑150 (MQ=255) cGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCa < 1:1640246/150‑1 (MQ=255) cAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGc > 2:1721383/1‑150 (MQ=255) aGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCa > 2:3118135/1‑150 (MQ=255) cGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGat > 1:2569039/1‑150 (MQ=255) gACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGata < 2:3660736/150‑1 (MQ=255) aCGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGatat < 1:3627629/150‑1 (MQ=255) cGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATAtt < 2:3169088/150‑1 (MQ=255) gTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCg > 1:314066/1‑150 (MQ=255) cGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGcc < 1:2461836/150‑1 (MQ=255) cGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGcc < 2:1474659/150‑1 (MQ=255) gAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATTCGATTAATTTTCTTCCCTTCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTTCTGCTTCGCTGGGTCAGCAAGATATTCGCCa < 2:3931816/150‑1 (MQ=255) gAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCa < 1:1883053/150‑1 (MQ=255) gAATTTCCTGGTAAATAAGCTGCCAGCATCGGTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCa < 2:725088/150‑1 (MQ=255) aaTTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAg > 2:2272504/1‑150 (MQ=255) ccTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCg < 1:368416/150‑1 (MQ=255) ggTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGcca > 1:782732/1‑150 (MQ=255) ggTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGcca < 2:3385864/150‑1 (MQ=255) tAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGccacc > 1:3944982/1‑150 (MQ=255) aaTAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCcaccac < 2:216512/150‑1 (MQ=255) aTAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACg < 1:1468251/150‑1 (MQ=255) aaGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACgat > 1:3347812/1‑150 (MQ=255) aGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACgatg < 2:1990410/150‑1 (MQ=255) gCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACgatga < 1:521720/150‑1 (MQ=255) tGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGatgatg < 2:114390/150‑1 (MQ=255) ccAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGAc < 1:3391089/150‑1 (MQ=255) ccAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGAc > 2:1635569/1‑150 (MQ=255) cATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGAcgccg > 1:3998968/1‑150 (MQ=255) gTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTa > 1:701429/1‑150 (MQ=255) tCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGAGCCAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTaccac > 2:2064595/1‑150 (MQ=255) cATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTaccacc > 1:268459/1‑150 (MQ=255) tAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACctg < 2:2982194/150‑1 (MQ=255) tAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACctg < 2:981365/150‑1 (MQ=255) aTCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACctgctg < 2:3778817/150‑1 (MQ=255) aTCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACctgctg > 1:3724808/1‑150 (MQ=255) tCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTgg > 2:1048497/1‑150 (MQ=255) cccTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGa > 2:3709281/1‑150 (MQ=255) cccTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGa > 2:569822/1‑150 (MQ=255) ccTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGaa > 2:1352669/1‑150 (MQ=255) ccTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGaa > 1:49843/1‑150 (MQ=255) aTTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAg > 2:829030/1‑150 (MQ=255) aTTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAg > 1:1826129/1‑150 (MQ=255) aTTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGACAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAg > 2:2298832/1‑150 (MQ=255) ttAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAgg < 1:1777238/150‑1 (MQ=255) aaCAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAg > 1:1534221/1‑150 (MQ=255) cAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGtt < 1:1138139/150‑1 (MQ=255) cAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGtt < 1:4101013/150‑1 (MQ=255) cAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGtt < 1:3834259/150‑1 (MQ=255) cAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGtt < 1:3080974/150‑1 (MQ=255) aTACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTaa < 1:4171267/150‑1 (MQ=255) aTACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTaa > 2:2871932/1‑150 (MQ=255) tACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGACAAAGGAGTTAAt > 2:4155733/1‑150 (MQ=255) tACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAAt > 1:282227/1‑150 (MQ=255) aCGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATa > 1:3171812/1‑150 (MQ=255) cGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATAc > 1:526931/1‑150 (MQ=255) gATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATAcc > 2:1225223/1‑150 (MQ=255) aTTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGGTTAGCGTTTCGCTGTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCg > 2:321025/1‑150 (MQ=255) aaTTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGagc < 1:645342/150‑1 (MQ=255) aTTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGagca < 2:1220161/150‑1 (MQ=255) tttCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGagcagc < 1:4124490/150‑1 (MQ=255) cATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCAcc > 1:2123150/1‑150 (MQ=255) cccTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGa > 1:1277582/1‑150 (MQ=255) cccTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGa > 1:1596718/1‑150 (MQ=255) cccTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCGTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGa > 1:2256214/1‑150 (MQ=255) ccTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGAc < 1:3192318/150‑1 (MQ=255) tGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCg < 1:3890969/150‑1 (MQ=255) ccGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGtt < 1:2711131/150‑1 (MQ=255) cGCACCCGCGCCAGGGGCGTTAAGTTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTa < 2:3640982/150‑1 (MQ=255) cACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTAcc < 2:4038832/150‑1 (MQ=255) ccGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGAt < 1:3385446/150‑1 (MQ=255) cgcgCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGAtt < 2:1909514/150‑1 (MQ=255) gcgcCAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTa < 2:3755466/150‑1 (MQ=255) cgcCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAg > 2:2603519/1‑150 (MQ=255) ccAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCg < 1:1327918/150‑1 (MQ=255) ccAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCg < 2:2139392/150‑1 (MQ=255) ccAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCg < 1:3523730/150‑1 (MQ=255) cAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCgg > 1:593057/1‑149 (MQ=255) cAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGt > 2:2216220/1‑150 (MQ=255) cAGGGGCGTTAAGGTTTAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGt < 2:2073173/150‑1 (MQ=255) ggCGTTAAGGTTTAGAGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTATCGTAATc < 2:1818416/150‑1 (MQ=255) gTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCAcc > 1:3820603/1‑150 (MQ=255) ttAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCa > 2:3145689/1‑150 (MQ=255) ttAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCa > 2:1222050/1‑150 (MQ=255) ggTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCAGcac < 1:2241275/150‑1 (MQ=255) tAGCTTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCAGCACACCa > 2:2883238/1‑150 (MQ=255) tAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCAGCACACCa < 1:3017236/150‑1 (MQ=255) cGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCAGCACACCAAGc > 2:3449347/1‑150 (MQ=255) gTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCAGCACACCAAGCa > 1:976936/1‑150 (MQ=255) | TCCCCGGCGTCGGCACCGCAACTTCCCGCAGATCGACGGTCGAATTTCCTGGTAAATAAGCTGCCAGCATCGTTTTCATAAATCCCTCATTAACAATACGATTAATTTTCATCCCTGCCGCACCCGCGCCAGGGGCGTTAAGGTTTAGCGTTTCGCTTTACTGCTTCGCTGGGTCAGCAAGATATTCGCCAGCACCGCCACCACGATGATGACGCCGCGTACCACCTGCTGGAAAAAGGAGTTAATACCGAGCAGCACCAGACCGTTACCGATTAGCGTAATCACCAGCACACCAAGCA > CP009273/2669042‑2669340 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |