| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,879,449 | G→T | 100% | S377* (TCA→TAA) | ygcB ← | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,879,449 | 0 | G | T | 96.8% | 877.0 / 14.6 | 263 | S377* (TCA→TAA) | ygcB | R‑loop helicase‑annealase Cas3 needed for Cascade anti‑viral activity |
| Reads supporting (aligned to +/- strand): ref base G (4/5); new base T (129/124); total (134/129) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.46e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 263 total aligned reads displayed.
TGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCAA > CP009273/2879302‑2879595 | gATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAAt < 2:499550/150‑1 (MQ=255) gATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAAt > 1:483524/1‑150 (MQ=255) aTCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAAtt > 1:1184110/1‑150 (MQ=255) aTCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAAtt < 1:3324108/150‑1 (MQ=255) aTCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACAGTTAAtt < 1:1121500/150‑1 (MQ=255) aaTCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGcc > 2:968089/1‑150 (MQ=255) aaTCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGcc > 1:1366421/1‑150 (MQ=255) gCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGc < 1:3376654/150‑1 (MQ=255) aaaCGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTCATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCaa > 2:1270757/1‑150 (MQ=255) ccGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGa < 2:1595154/149‑1 (MQ=255) gCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAAt < 1:1573665/150‑1 (MQ=255) gCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAAt > 2:2478815/1‑150 (MQ=255) cGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATaa > 2:2591957/1‑150 (MQ=255) gATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTCATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCTATGAGCAAGAATAAg > 2:3467390/1‑150 (MQ=255) gATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAg < 1:2163402/150‑1 (MQ=255) ttGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGAtt > 2:2240887/1‑150 (MQ=255) gCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTg > 1:1201679/1‑150 (MQ=255) ccAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCCTGAGCAAGAATAAGATTTggg > 2:2855100/1‑150 (MQ=255) cAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTgggg < 2:1632886/150‑1 (MQ=255) aaGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGTGGa > 2:3114714/1‑150 (MQ=255) aaGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGa > 2:252147/1‑150 (MQ=255) aaaCACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGa < 1:1717957/150‑1 (MQ=255) aaCACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGac > 2:3058075/1‑149 (MQ=255) aaCACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGaa > 2:3058082/1‑150 (MQ=255) acacTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGaaa > 2:2286254/1‑150 (MQ=255) acTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAAt < 2:3274565/150‑1 (MQ=255) tttCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATaa < 1:682353/150‑1 (MQ=255) tttCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCGGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATaa > 2:1983503/1‑150 (MQ=255) ttCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAg > 2:60566/1‑150 (MQ=255) ttCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAg < 1:1276399/150‑1 (MQ=255) aTTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGgct < 2:103699/150‑1 (MQ=255) cTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGgctcgcg > 1:1062482/1‑150 (MQ=255) tttGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGgctcgcgc > 1:1426640/1‑150 (MQ=255) tgACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGgctcgcgctcgc < 1:1996599/150‑1 (MQ=255) tgACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAAGAAGATTTGGGGATGAAAATAAGTGgctcgcgctcgc > 2:2880301/1‑150 (MQ=255) gACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTACTCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGAGTTGGGGATGAAAATAAGTGGCTCGcgctcgct > 2:2094450/1‑150 (MQ=255) gACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGcgctcgct > 1:3451429/1‑150 (MQ=255) aaCCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTcc > 1:3670141/1‑150 (MQ=255) aCCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCa > 1:3357518/1‑150 (MQ=255) cACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCAtt > 1:2721114/1‑150 (MQ=255) cACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCAtt < 1:224568/150‑1 (MQ=255) cACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCAtt < 1:4164338/150‑1 (MQ=255) cACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATGTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCAtt > 1:2868041/1‑150 (MQ=255) tGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTACTCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATtctc > 2:2752905/1‑150 (MQ=255) tGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATtctc < 2:1699956/150‑1 (MQ=255) tGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATtctc < 2:1699855/150‑1 (MQ=255) cTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcat > 1:1163374/1‑150 (MQ=255) tGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcata > 1:4003196/1‑150 (MQ=255) tGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcata > 1:3137044/1‑150 (MQ=255) gAACCCACGCTTCTTCTTGACCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGACATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAagcatag > 2:1055034/1‑150 (MQ=255) cACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTc < 2:3516221/150‑1 (MQ=255) cACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTc > 1:995683/1‑150 (MQ=255) aCGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTcg < 2:2066393/150‑1 (MQ=255) cttcttGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGAGTTGGGGATGAAAATAAGTGGATCGCGCTCGCTACCATTCTCGTAAGCATAGCATTCGCGGTAg > 2:1376932/1‑150 (MQ=255) cttGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCtt < 1:2735726/150‑1 (MQ=255) cttGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCtt > 2:554915/1‑150 (MQ=255) tGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTtgt < 2:4147875/150‑1 (MQ=255) tGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTtgt < 2:3589051/150‑1 (MQ=255) ccccTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTgtgt > 1:3824981/1‑150 (MQ=255) cccTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGtt > 1:3037035/1‑150 (MQ=255) cTGTTCAGTAATCGCGCGTGATTTTATTTATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTgg < 1:1741749/150‑1 (MQ=255) cTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTgg < 1:1493710/150‑1 (MQ=255) gTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGa < 2:363349/150‑1 (MQ=255) ttCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAg < 2:3689324/150‑1 (MQ=255) cAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAggg > 2:827520/1‑150 (MQ=255) gTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCa > 1:1033519/1‑150 (MQ=255) tCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCaaaaa < 2:3775248/150‑1 (MQ=255) gcgcgTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATa < 1:3402788/150‑1 (MQ=255) cgTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAaca < 1:2477018/150‑1 (MQ=255) gATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTa < 1:3779842/150‑1 (MQ=255) gATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTa > 2:3029453/1‑150 (MQ=255) gATTTTATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTa > 2:2034668/1‑150 (MQ=255) gATTTTATGGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTa > 2:2000381/1‑150 (MQ=255) ttttATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATc < 1:2949415/150‑1 (MQ=255) tttATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATcc < 1:630330/150‑1 (MQ=255) tATTGATTGAAAGAGGTGTTTAAACCGTTAATTGCCATTAGCAATAATAAGAATTGGGGATGAAAATAAGTTGCTCGCGCTCGCATCAATTCTCGTAAGCATAGAATTCGAGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGc > 2:1828239/1‑150 (MQ=255) tATTGATTGAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGc > 1:3204846/1‑150 (MQ=255) attgattgAAAGTGGTGGTTAATCCGTTATTTGCCTTGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTTAGCATAGCATTCGCGGTTGCTTGTGTTGGGAGGGCAAAAATATCACTATCCGct < 2:1304923/150‑2 (MQ=255) attgattgAAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCa < 2:3304263/150‑1 (MQ=255) attgattgAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCa < 2:3382623/150‑1 (MQ=255) ttgattgaAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCaa < 1:1606630/150‑1 (MQ=255) tgattgaAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAAt < 2:2793628/150‑1 (MQ=255) attgaAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAAttt < 2:399237/150‑1 (MQ=255) ttgaAAGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATttg < 1:1969206/150‑1 (MQ=255) aaGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGa > 1:784790/1‑150 (MQ=255) aaGAGGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGa > 1:1109729/1‑150 (MQ=255) agagGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGAt < 2:2504881/150‑1 (MQ=255) agGTGGTTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCa > 1:3553063/1‑150 (MQ=255) gtggtTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAAt < 2:1366421/150‑1 (MQ=255) gtggtTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAAt < 2:836426/150‑1 (MQ=255) ggtTAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATttgt < 1:3266397/140‑1 (MQ=255) gtTAAACCGTGTATTGCAATGAGCAAGAATAATCTTTGGTGATGATAATAAGTGGCTCGCGCTCGCTTACATTCTCGTAAGCATAGCATTCGCTGTAGCTTGTGTTGGGAGGGCAAAAATTACACTATCAGCAATTTGTTGATCAATAAg < 2:767362/150‑1 (MQ=255) ttAAACCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGt < 1:2591944/150‑1 (MQ=255) tAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGtt < 2:1217234/150‑1 (MQ=255) aaaCCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGttt < 1:2292157/150‑1 (MQ=255) aaCCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTc < 2:3344957/150‑1 (MQ=255) aCCGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTcc > 2:4043925/1‑150 (MQ=255) ccGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCa > 2:1179496/1‑150 (MQ=255) ccGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCa < 2:4140116/150‑1 (MQ=255) ccGTTAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCa > 2:3272344/1‑150 (MQ=255) | TGATCAATCGTGCAAACGCCGATTTGCCCAAGAAACACTTTCTTATTGCTTTGTGACAACCACTGACAACACTGAACCCACGCTTCTTCTTGCCCCTGTTCAGTAATCGCGCGTGATTTTATTGATTGAAAGAGGTGGTTAAACCGTGAATTGCCATGAGCAAGAATAAGATTTGGGGATGAAAATAAGTGGCTCGCGCTCGCTTCCATTCTCGTAAGCATAGCATTCGCGGTAGCTTGTGTTGGGAGGGCAAAAATAACACTATCCGCAATTTGTTGATCAATAAGTTTCCAA > CP009273/2879302‑2879595 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |