| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,225,300 | C→A | 13.7% | Q93K (CAG→AAG) | fadH → | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,225,300 | 0 | C | A | 13.7% | 701.9 / 66.0 | 211 | Q93K (CAG→AAG) | fadH | 2,4‑dienoyl‑CoA reductase, NADH and FMN‑linked |
| Reads supporting (aligned to +/- strand): ref base C (74/108); new base A (17/12); total (91/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.05e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01 | |||||||||||
Only 100 of 213 total aligned reads displayed.
TTATGCCGAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCAACTGATCGAC > CP009273/3225152‑3225449 | ttATGCCGAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCa < 1:1530714/150‑1 (MQ=255) tATGCCGAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAg > 2:442266/1‑150 (MQ=255) tATGCCGAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAg > 2:1119550/1‑150 (MQ=255) aTGCCGAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAgg < 2:3797563/150‑1 (MQ=255) gCCGAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGaa < 2:3204788/150‑1 (MQ=255) gAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAggc < 1:1250543/150‑1 (MQ=255) gAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAggc > 2:3627392/1‑150 (MQ=255) aCGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATAAGGAAggcgg > 2:3074944/1‑150 (MQ=255) gcgcCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCa > 2:1241241/1‑150 (MQ=255) cgcCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCaa < 2:3096985/150‑1 (MQ=255) ccGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAAt < 1:3070678/150‑1 (MQ=255) cGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATa < 2:4135604/150‑1 (MQ=255) tCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGc < 2:2941037/150‑1 (MQ=255) tCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGc < 1:2477613/150‑1 (MQ=255) cACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGcc > 2:2993597/1‑150 (MQ=255) cACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGcc > 2:542128/1‑150 (MQ=255) cGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCt < 1:3238232/150‑1 (MQ=255) cGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCt < 2:273950/150‑1 (MQ=255) cGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATAAGGAAGGCGGCAAAATAGCCCt > 1:881206/1‑150 (MQ=255) ggCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCTATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTg < 1:560016/150‑1 (MQ=255) gTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCaa < 2:648335/150‑1 (MQ=255) ggCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAAt > 1:1565544/1‑150 (MQ=255) cTGAGTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTg < 2:1181367/150‑1 (MQ=255) gATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCa > 1:2977607/1‑150 (MQ=255) gTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATAAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATAcc < 1:1440203/150‑1 (MQ=255) ggcggcATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGgcgc > 1:85036/1‑150 (MQ=255) ggcggcATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGgcgc > 1:85194/1‑150 (MQ=255) gcggcATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCt < 1:2787123/150‑1 (MQ=255) ggcATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTAc > 2:58069/1‑150 (MQ=255) gcATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACa < 2:1643400/150‑1 (MQ=255) cATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAg < 2:1283132/150‑1 (MQ=255) aTTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGc > 1:1304002/1‑150 (MQ=255) tGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATCACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTa < 1:3518018/150‑1 (MQ=255) aGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAAcc < 1:2612601/150‑1 (MQ=255) aGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAAcc < 1:2222490/150‑1 (MQ=255) aGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAAcc < 1:3142670/150‑1 (MQ=255) aGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAAcc < 2:3321061/150‑1 (MQ=255) gATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCg > 1:952163/1‑150 (MQ=255) aCAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTg < 2:1759525/150‑1 (MQ=255) cAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATAAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTgg < 1:321550/150‑1 (MQ=255) ggCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTc < 2:4160391/150‑1 (MQ=255) ggCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTc > 1:441374/1‑150 (MQ=255) ggCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTc < 1:2722522/150‑1 (MQ=255) ggCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATAAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTc < 2:3618812/150‑1 (MQ=255) cGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGc > 2:1472917/1‑150 (MQ=255) cATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTc > 2:2519293/1‑150 (MQ=255) tGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCg < 2:3259759/150‑1 (MQ=255) aaGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCAt < 1:1345805/150‑1 (MQ=255) aaGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCAt < 1:2215866/150‑1 (MQ=255) aGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCAtt > 1:2801461/1‑150 (MQ=255) ggCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAg > 1:697524/1‑150 (MQ=255) gcAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGcc < 1:3577495/150‑1 (MQ=255) gcAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGcc < 1:3577376/150‑1 (MQ=255) cAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATAAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGccc < 2:2482227/150‑1 (MQ=255) aaTGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGcccc > 1:2161776/1‑150 (MQ=255) aTGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGccccc > 1:816268/1‑150 (MQ=255) tGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCa > 2:3047426/1‑150 (MQ=255) tCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCa > 2:1223694/1‑150 (MQ=255) cAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCaa < 2:2190617/150‑1 (MQ=255) acgCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGtt < 1:2954975/150‑1 (MQ=255) acgCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGtt < 1:4002988/150‑1 (MQ=255) cgCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGttt < 2:4095828/150‑1 (MQ=255) gccagccaGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTTCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTc < 1:2345555/150‑1 (MQ=255) ccagccagATCCCACACCATCGCACCATTACCGAAGCGGTACATAAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCg < 2:1416665/150‑1 (MQ=255) ccagATCCCACACCATCGCACCATTACCGAAGCGGTACATAAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGcc > 2:2576566/1‑150 (MQ=255) cagATCCCACACCATCGCACCATTACCGAAGCTGTACATCAGGAAGGCGTCAAAATATCCATGCAAATTTTGCATACCGGGCTCAACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGAGccc > 1:2048400/1‑150 (MQ=255) cagATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAAACGTTTCGTGccc > 1:3524653/1‑150 (MQ=255) aTCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTATGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCAt > 2:200702/1‑150 (MQ=255) cccACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGa > 2:3585617/1‑150 (MQ=255) cccACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGa > 1:679200/1‑150 (MQ=255) cccACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGa > 1:3689919/1‑150 (MQ=255) ccACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAg < 1:3617659/150‑1 (MQ=255) cacaCCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGt > 2:2790860/1‑150 (MQ=255) acacCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGtt < 2:2063580/150‑1 (MQ=255) acacCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGtt < 2:1547293/150‑1 (MQ=255) acacCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGtt < 1:62923/150‑1 (MQ=255) cacCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTa < 2:1395124/150‑1 (MQ=255) cacCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTa > 1:940265/1‑150 (MQ=255) acCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCAGGAGTTaa > 1:845790/1‑150 (MQ=255) acCATCGCACCATTACCGAAGCGGTACATAAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTaa > 1:3385554/1‑150 (MQ=255) ccATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAg < 1:3314897/150‑1 (MQ=255) tCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCa < 1:3473169/150‑1 (MQ=255) gCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATg < 2:1011448/150‑1 (MQ=255) aCCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGaa < 1:3091525/150‑1 (MQ=255) ccATTACCGTAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAag < 2:3085108/150‑1 (MQ=255) ccATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTAGTGCCCCATGAGTTAAGCCATGAag < 1:1944647/150‑1 (MQ=255) aTTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAagag > 2:3979659/1‑150 (MQ=255) aTTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAagag > 1:960767/1‑150 (MQ=255) aTTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAagag > 2:2627838/1‑150 (MQ=255) tACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGAt < 2:2549600/150‑1 (MQ=255) cGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCt < 2:2828419/150‑1 (MQ=255) aaGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGc > 2:1121441/1‑150 (MQ=255) aGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCa < 1:532719/150‑1 (MQ=255) ggTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCAACt < 2:2352436/150‑1 (MQ=255) gTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCAACTg < 2:675/150‑1 (MQ=255) tACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCAACTGa < 2:1196262/150‑1 (MQ=255) tACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCAACTGa < 1:505728/150‑1 (MQ=255) cATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGAACCTGCAACTGATc > 1:1038189/1‑150 (MQ=255) cATAAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCAACTGATc > 2:587452/1‑150 (MQ=255) tCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCAACTGATCGa < 1:2307264/150‑1 (MQ=255) | TTATGCCGAACGCGCCCGTCACGGCGTGGCGCTGATTGTCAGCGGCGGCATTGCACCAGATTTAACAGGCGTTGGCATGGAAGGTGGCGCAATGCTCAACGACGCCAGCCAGATCCCACACCATCGCACCATTACCGAAGCGGTACATCAGGAAGGCGGCAAAATAGCCCTGCAAATTTTGCATACCGGGCGCTACAGCTACCAACCGCATCTGGTCGCCCCGTCCGCATTGCAGGCCCCCATCAACCGTTTCGTGCCCCATGAGTTAAGCCATGAAGAGATCCTGCAACTGATCGAC > CP009273/3225152‑3225449 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |