| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,933,926 | G→T | 6.4% | A16E (GCG→GAG) | hsrA ← | putative multidrug or homocysteine efflux system |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,933,926 | 0 | G | T | 6.4% | 971.2 / 28.3 | 250 | A16E (GCG→GAG) | hsrA | putative multidrug or homocysteine efflux system |
| Reads supporting (aligned to +/- strand): ref base G (107/127); new base T (9/7); total (116/134) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.66e-01 | |||||||||||
Only 100 of 262 total aligned reads displayed.
TACCGGAATAAGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAAT > CP009273/3933778‑3934075 | tACCGGAATAAGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTCAGAATAGTGGCATCAAGTGCCTGCAGGAAGAAGGCCATcgccgc > 1:118239/1‑150 (MQ=255) ggAATAAGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATc < 1:1916209/150‑1 (MQ=255) ggAATAAGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATc > 1:3817112/1‑150 (MQ=255) aTAAGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCAc < 2:2201393/150‑1 (MQ=255) aTAAGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCTAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCAc < 1:587439/150‑1 (MQ=255) tAAGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCTCGATCCACg > 1:1867574/1‑150 (MQ=255) aaGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACgg < 1:2160485/150‑1 (MQ=255) aaGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACgg < 1:2160466/150‑1 (MQ=255) aGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGc > 2:3275424/1‑150 (MQ=255) cGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAAcc > 1:2533139/1‑150 (MQ=255) gCCACCGTCAGCGTATAACTGATGATGGCTTATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCAATTGCGGGTAAGGCGGTATTAAGAATAGTGTCATCAAGTGCCTGCATGAAGAAGGCAATCGACGCGATCCACGGCAAAccc > 2:676195/1‑150 (MQ=255) ccACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCg < 2:1351031/150‑1 (MQ=255) ccACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCg < 1:3369110/150‑1 (MQ=255) cACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGc > 1:3874304/1‑150 (MQ=255) ccGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCa < 2:256871/150‑1 (MQ=255) gTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATa < 1:4146182/150‑1 (MQ=255) cAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACt < 2:1913066/150‑1 (MQ=255) cAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACt < 2:2214858/150‑1 (MQ=255) cAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACt > 1:3699856/1‑150 (MQ=255) cAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACt < 1:3145484/150‑1 (MQ=255) aGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTg < 2:2388565/150‑1 (MQ=255) aaCTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGcttct < 1:2891233/150‑1 (MQ=255) aaCTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGcttct < 1:469653/150‑1 (MQ=255) aaCTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGcttct < 2:3237476/150‑1 (MQ=255) aCTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGcttctt < 2:1556716/150‑1 (MQ=255) aCTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGcttctt < 2:837539/150‑1 (MQ=255) aCTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGcttctt < 2:837651/150‑1 (MQ=255) gatgatGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCttttt > 1:2798484/1‑150 (MQ=255) gatgatGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCttttt < 2:708996/150‑1 (MQ=255) atgatgGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTa > 2:183134/1‑150 (MQ=255) gatgGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATc < 2:3705044/150‑1 (MQ=255) atgGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCTCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCg < 1:2649348/150‑1 (MQ=255) atgGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCg < 1:4001254/150‑1 (MQ=255) tgGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGc > 2:3079441/1‑150 (MQ=255) tGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCAt < 1:1068467/150‑1 (MQ=255) gATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCAtt < 2:4050565/150‑1 (MQ=255) gATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCAtt > 2:3597132/1‑150 (MQ=255) gATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCAtt < 1:1382854/150‑1 (MQ=255) ttGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCTCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCa < 2:2906658/150‑1 (MQ=255) tGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCaa > 2:946795/1‑150 (MQ=255) gCATCGCGAGTGGTGTACGATTATTGCTATGAGCTATTGCTGGTAAGGCGGTATTCTGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCAGCGATCCACGGCATACCCGCCATTCTGCGGTTCTTTTTATCGCTCATTCAAt < 1:272016/150‑1 (MQ=255) cATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCTCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATg > 1:4166017/1‑150 (MQ=255) cgcgAGAGGAGAACGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTcc < 1:2778511/150‑1 (MQ=255) gagaGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGt > 1:3340635/1‑150 (MQ=255) agatGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAATTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACACGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGtt < 1:1108012/150‑1 (MQ=255) agagGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGACTAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGtt < 1:3485058/150‑1 (MQ=255) aggagAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTAt > 1:3030137/1‑150 (MQ=255) ggagAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATc > 2:3172992/1‑150 (MQ=255) gaACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCggg > 1:2309750/1‑150 (MQ=255) cGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTa < 1:3717243/150‑1 (MQ=255) cGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTa < 1:3717296/150‑1 (MQ=255) cGATTAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTa < 2:3961046/150‑1 (MQ=255) gATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTAt > 2:2937173/1‑150 (MQ=255) aTTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATc < 2:1683920/150‑1 (MQ=255) ttAAGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCa < 2:1193936/150‑1 (MQ=255) aaGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACt > 1:199682/1‑150 (MQ=255) aGGCTATGAGCTATTGCGGGTAAGGCGGTATTAAGTATAGTGGCATCAAGTGCCTTCATGTAGAAGGCCATCGCCGCGATCCACTGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACtt < 1:1151496/150‑1 (MQ=255) cTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATc > 2:1714940/1‑150 (MQ=255) gAGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGt > 1:869011/1‑150 (MQ=255) aGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTg > 2:1469457/1‑150 (MQ=255) aGCTATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTg > 1:2364782/1‑150 (MQ=255) aGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTg < 1:3299422/150‑1 (MQ=255) taTTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGc < 2:1004004/149‑1 (MQ=255) gATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGc < 1:1493506/150‑1 (MQ=255) aTTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCg > 1:142977/1‑150 (MQ=255) tGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTa < 2:3817112/150‑1 (MQ=255) tGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTa > 1:834104/1‑150 (MQ=255) gggTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTagca < 2:2319858/150‑1 (MQ=255) gggTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTagca < 1:701948/150‑1 (MQ=255) ggTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTagcag < 1:3286224/150‑1 (MQ=255) ggTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTagcag < 1:2405903/150‑1 (MQ=255) aaGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAgcgc > 2:2806948/1‑150 (MQ=255) aaGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGAAGCAgcgc > 1:3532759/1‑150 (MQ=255) ggCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCt > 2:3887580/1‑150 (MQ=255) cGGTATTAAGAAGAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGa < 2:2280414/150‑1 (MQ=255) gTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACa > 1:3607018/1‑150 (MQ=255) aGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATg > 1:745687/1‑150 (MQ=255) aGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATg > 2:3924264/1‑150 (MQ=255) ggCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCcg < 2:1077753/150‑1 (MQ=255) aTCAAGTGCCTGCATGAAGAAGGCCATCGCCTCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGt < 2:3459281/150‑1 (MQ=255) aTCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGt > 1:3214056/1‑150 (MQ=255) aaGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGc > 1:1677910/1‑150 (MQ=255) tGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCAt > 2:3671689/1‑150 (MQ=255) gCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATc < 2:3996516/150‑1 (MQ=255) cTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGc > 1:3682813/1‑150 (MQ=255) gCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCtt > 2:2422505/1‑150 (MQ=255) gCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCtt < 1:3099167/150‑1 (MQ=255) cATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCttt > 1:1775964/1‑150 (MQ=255) agaagGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATa > 1:1000488/1‑150 (MQ=255) gaagGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATaa < 2:748163/150‑1 (MQ=255) agGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATc < 2:1392928/150‑1 (MQ=255) cATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCAt > 2:3469806/1‑150 (MQ=255) aTCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATc < 1:557355/150‑1 (MQ=255) tCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCg < 1:3016358/150‑1 (MQ=255) gccgcGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGAc > 2:3759440/1‑150 (MQ=255) gccgcGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGAc > 2:1661968/1‑150 (MQ=255) ccgcGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACa > 1:2478091/1‑150 (MQ=255) cgcgATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACaa > 2:300926/1‑150 (MQ=255) cgcgATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACaa > 2:4086741/1‑150 (MQ=255) gcgATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAAt < 2:3708328/150‑1 (MQ=255) | TACCGGAATAAGCATCGCCACCGTCAGCGTATAACTGATGATGGCTGATTGCATCGCGAGAGGAGAACGATTAAGGCTATGAGCGATTGCGGGTAAGGCGGTATTAAGAATAGTGGCATCAAGTGCCTGCATGAAGAAGGCCATCGCCGCGATCCACGGCAAACCCGCCATACTGCGCTTCTTTTTATCGCTCATTCAATGTCCTGTTATCGGGTTATCACTTATCAGGTGAGCGTAGCAGCGCCTGACAAGCTTTAAATGCCGCGTCGCCATCGCTTTGGATAATCGCATCGACAAT > CP009273/3933778‑3934075 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |