| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,257,209 | C→A | 14.0% | E390* (GAA→TAA) | tdcC ← | L‑threonine/L‑serine transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,257,209 | 0 | C | A | 14.0% | 865.7 / 79.7 | 256 | E390* (GAA→TAA) | tdcC | L‑threonine/L‑serine transporter |
| Reads supporting (aligned to +/- strand): ref base C (107/113); new base A (19/17); total (126/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 258 total aligned reads displayed.
TACGATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTT > CP009273/3257060‑3257358 | taCGATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTc < 1:1371803/150‑1 (MQ=255) gATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAAt > 2:4600712/1‑150 (MQ=255) aTGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATc > 1:4271446/1‑150 (MQ=255) gTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCATGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAg > 1:2400733/1‑150 (MQ=255) gTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAg < 2:275222/150‑1 (MQ=255) tCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGt < 2:4549420/150‑1 (MQ=255) tCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGt > 1:4524121/1‑150 (MQ=255) tCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGt > 1:4524636/1‑150 (MQ=255) tCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGt < 1:3480742/150‑1 (MQ=255) ggATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCaa < 1:4035283/150‑1 (MQ=255) gATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAg < 2:517553/150‑1 (MQ=255) tGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGa > 2:3201247/1‑150 (MQ=255) gTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATg < 2:4294193/150‑1 (MQ=255) tCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGt < 1:3295131/150‑1 (MQ=255) agcagACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTc > 1:1875422/1‑150 (MQ=255) agcagACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTc > 1:232601/1‑150 (MQ=255) agcagACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTc > 2:2998823/1‑150 (MQ=255) agcagACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTc > 2:1758550/1‑150 (MQ=255) agcagACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTc > 2:2999207/1‑150 (MQ=255) agACCAATCACGGTAACAAACACGTTATCCGGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCggg > 1:3368665/1‑150 (MQ=255) gACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGt > 2:1517596/1‑150 (MQ=255) gACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGt > 1:1309697/1‑150 (MQ=255) ccAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTg < 2:1466228/150‑1 (MQ=255) cAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTgg > 2:1261940/1‑150 (MQ=255) aTCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCg > 1:3245405/1‑150 (MQ=255) aCGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAg < 1:26315/150‑1 (MQ=255) aCGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAg > 2:3765402/1‑150 (MQ=255) cGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAgg > 2:1208307/1‑150 (MQ=255) ggTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGc < 2:330977/150‑1 (MQ=255) gTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGca < 2:2416300/150‑1 (MQ=255) aacaaacaCGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGcaac > 2:2686162/1‑150 (MQ=255) cacGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCa < 1:3014633/150‑1 (MQ=255) cGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAgg > 2:1015408/1‑150 (MQ=255) ttATCCAGACGACCACGGTATTTCGACAGAGACGGCGCTTTACGGATGGCATAAATCGGCAACATGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAggag > 1:104504/1‑148 (MQ=255) cAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGcc > 2:4637023/1‑150 (MQ=255) aGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGccc < 1:1907746/150‑1 (MQ=255) acgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCat < 1:4186120/150‑1 (MQ=255) acgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCat < 2:1266562/150‑1 (MQ=255) acgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCat > 2:2947102/1‑150 (MQ=255) acgacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCat > 1:1562156/1‑150 (MQ=255) gacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCatga < 2:4002317/150‑1 (MQ=255) gacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCatga > 1:4135043/1‑150 (MQ=255) gacCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCatga < 1:719759/150‑1 (MQ=255) acCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCatgat < 2:3348818/150‑1 (MQ=255) aCGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGaa < 1:1989623/150‑1 (MQ=255) ggTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGa < 1:2482824/150‑1 (MQ=255) ggTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGa > 2:368325/1‑150 (MQ=255) cGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCt > 2:4473661/1‑150 (MQ=255) gCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTg > 1:846809/1‑150 (MQ=255) agagACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATa > 1:3629088/1‑150 (MQ=255) agagACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATa > 1:2805733/1‑150 (MQ=255) aCGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAgtgt < 2:3976533/150‑1 (MQ=255) cGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGtt < 2:1959279/150‑1 (MQ=255) ggCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTc > 2:2632541/1‑150 (MQ=255) cgcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAg < 1:2214247/150‑1 (MQ=255) cgcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAg > 2:1663571/1‑150 (MQ=255) cgcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAg < 1:1213783/150‑1 (MQ=255) gcTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGt > 1:3808590/1‑150 (MQ=255) cTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGtt < 1:1076968/150‑1 (MQ=255) tACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTAc > 2:312489/1‑150 (MQ=255) tACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTAc < 1:3674249/150‑1 (MQ=255) aCGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTAcc < 2:4185503/150‑1 (MQ=255) cGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTAccc > 2:1681757/1‑150 (MQ=255) ggATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCa < 2:2321563/150‑1 (MQ=255) gATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAg < 2:1949397/150‑1 (MQ=255) tGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCg < 1:3981557/150‑1 (MQ=255) ggCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGa < 1:1862970/150‑1 (MQ=255) cATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACttt < 2:2163975/150‑1 (MQ=255) cATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACttt < 2:1159192/150‑1 (MQ=255) cATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACttt < 2:657283/150‑1 (MQ=255) cAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGtttt > 2:886821/1‑150 (MQ=255) cacaGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCt < 2:922087/150‑1 (MQ=255) cacaGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCt < 2:2227687/150‑1 (MQ=255) acaGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCtt < 2:2344960/150‑1 (MQ=255) cagcagGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCttt > 1:1026016/1‑150 (MQ=255) cagGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTtata > 2:505182/1‑150 (MQ=255) agGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATaa > 2:3409613/1‑150 (MQ=255) agGGATGCGATAATCGGTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATaa > 2:2818174/1‑150 (MQ=255) aTGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCaa > 1:3403669/1‑150 (MQ=255) gATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACtt < 2:1642705/150‑1 (MQ=255) gATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACtt > 1:129874/1‑150 (MQ=255) gATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACtt < 2:2355606/150‑1 (MQ=255) aTAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTc < 1:2762717/150‑1 (MQ=255) aaTCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAg > 2:728025/1‑150 (MQ=255) gTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCa < 1:4336314/150‑1 (MQ=255) gTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCa < 1:4456811/150‑1 (MQ=255) gTGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCa < 2:1518851/150‑1 (MQ=255) tGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAg > 1:428333/1‑150 (MQ=255) tGCGCCCATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCAAGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGAACAg > 1:4415744/1‑150 (MQ=255) gcgcCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAgg > 2:859638/1‑150 (MQ=255) gcCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGcc < 2:3272586/150‑1 (MQ=255) gcCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGcc < 2:955413/150‑1 (MQ=255) ccATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCAt < 1:492355/150‑1 (MQ=255) ccATGGCTTAAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCAt < 2:4054803/150‑1 (MQ=255) cATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCAtt < 2:4029950/150‑1 (MQ=255) ggCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAg < 2:1560893/150‑1 (MQ=255) cTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGAc > 2:3611544/1‑150 (MQ=255) ttCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGAcc < 1:1551769/150‑1 (MQ=255) ttCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGAcc < 1:679568/150‑1 (MQ=255) tCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCt > 2:2448221/1‑150 (MQ=255) | TACGATGTTCAGGATGGTCAGCAGACCAATCACGGTAACAAACACGTTATCCAGACGACCACGGTATTTCGCCAGAGACGGCGCTTTACGGATGGCATACATCGGCAACAGGCACAGCAGGGATGCGATAATCGGTGCGCCCATGGCTTCAATCAGGTCAAGGATGTTCGGGTTGGCGTAGGCAACAACCCAGGTGGAGCCCATGATGAAGATCATGCTGATAGTGTTCAGTTTACCCAGCGACACTTTAGTTTTGTCGCCTTTATAACCAAACTTCAGGACCAGGCCATTCAGACCTT > CP009273/3257060‑3257358 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |