| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,629,424 | T→A | 6.4% | intergenic (+171/+144) | yhiM → / ← yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,629,424 | 0 | T | A | 6.4% | 836.3 / 34.4 | 264 | intergenic (+171/+144) | yhiM/yhiN | acid resistance protein, inner membrane/putative oxidoreductase |
| Reads supporting (aligned to +/- strand): ref base T (137/109); new base A (8/9); total (145/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.16e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.88e-01 | |||||||||||
Only 100 of 266 total aligned reads displayed.
CCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAG > CP009273/3629274‑3629571 | ccAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑‑TTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGtt < 1:1114560/150‑1 (MQ=255) gTTGACCATTTTCGTATTGCTGTTTTTTCTTAGGCATCTTGTAATAACGCATCATTAATGCATAGTTGTTTAGTATAAAAAACAGCATAGTTACTG‑TTTTTTTCAACCTGTTCATATTTAATAAAGATCTGGCCACTGAGTGAGTTTTCa < 2:3458893/150‑1 (MQ=255) gTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCa > 2:851993/1‑150 (MQ=255) gTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCa > 1:397117/1‑150 (MQ=255) gTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCa < 1:610428/150‑1 (MQ=255) gTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATAGTTCATAAAGATCTGGCCACTGAGTGAGTTTTCa > 1:1732144/1‑150 (MQ=255) tGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAAt < 1:3830423/150‑1 (MQ=255) gACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATc > 1:4070092/1‑150 (MQ=255) aCCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCa < 1:700081/150‑1 (MQ=255) cATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCAcc < 2:2789897/150‑1 (MQ=255) tttGCGTAACGCTTTTTTTTCTTAGTCATCATGATATAACTCATCATTAATGCATAGGGGTTAAGTATAAAAAACAGCAATGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCTCTGAGTGAGTTTACAATCACCtt < 2:3728152/150‑1 (MQ=255) ttGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCttt < 1:2522731/150‑1 (MQ=255) tGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTGTTTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCttt > 1:22123/1‑150 (MQ=255) tGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtc > 1:942603/1‑150 (MQ=255) aCGCTGGTTTTTCTTAGGCATCATGAAATAACGGAGCATTTATGCATAGTGGTTAAGTATAAAAAAAAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATATAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTtcaatcca < 2:950694/150‑1 (MQ=255) cGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCAc < 2:3830218/150‑1 (MQ=255) gTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTtat < 1:2241249/150‑1 (MQ=255) tttttCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTtata < 1:1802120/150‑1 (MQ=255) tttttCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTATTCAATCACCTTTCCATCCACCTtata < 2:3639484/150‑1 (MQ=255) ttttCTTAGGCATAATGAAATAACTCAGCATTAATGCATAGTTGTTAAGGATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAAACTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATAACCTTTCAATCCACCTTatat < 2:1316999/150‑1 (MQ=255) ttttATTAGGCATCATGAAATAACGCAGAATTAATGCATAGTGGTTAATTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTatat < 1:3775452/150‑1 (MQ=255) ttCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTa > 1:1172612/1‑150 (MQ=255) ggCATCATTAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATg < 2:645511/150‑1 (MQ=255) tGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGtt > 1:4185935/1‑150 (MQ=255) tGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGtt < 1:294617/150‑1 (MQ=255) aaTAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCa > 2:3746639/1‑150 (MQ=255) aTAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAg > 2:1774776/1‑150 (MQ=255) aTAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAg > 2:2493625/1‑150 (MQ=255) aTAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAg < 1:781853/150‑1 (MQ=255) tAACTCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGt < 2:3129492/150‑1 (MQ=255) tAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGt > 1:1533698/1‑150 (MQ=255) aCGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTc > 1:1617159/1‑150 (MQ=255) agcaTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACgg > 1:2762722/1‑150 (MQ=255) gcaTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACggg < 2:4039539/150‑1 (MQ=255) aTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCt > 2:538361/1‑150 (MQ=255) aTTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGATTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCt < 1:1329050/150‑1 (MQ=255) tAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCa > 2:483436/1‑150 (MQ=255) tAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCa > 2:3584668/1‑150 (MQ=255) aaTGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCAt < 2:4245221/150‑1 (MQ=255) tGCTTAGTGGTTTAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTa < 2:2130939/150‑1 (MQ=255) gCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAg > 2:3884232/1‑150 (MQ=255) cATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGa > 1:4497952/1‑150 (MQ=255) aTAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGaa > 2:1741826/1‑150 (MQ=255) aTAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGaa > 1:2495234/1‑150 (MQ=255) tAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTATTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGaaa < 1:2614349/150‑1 (MQ=255) gTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAaat > 1:3465995/1‑150 (MQ=255) gTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAaat > 1:3862279/1‑150 (MQ=255) tGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAaata > 2:2998201/1‑150 (MQ=255) ggTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAaataa > 1:209920/1‑150 (MQ=255) ggTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAaataa > 2:709415/1‑150 (MQ=255) gTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACaa < 1:41811/150‑1 (MQ=255) gTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTATTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACaa > 1:3146374/1‑150 (MQ=255) aaaaaaCAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATa < 2:1664498/150‑1 (MQ=255) aaaaaCAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATaa > 2:1048612/1‑150 (MQ=255) aaaCAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAAcc > 2:1930984/1‑150 (MQ=255) aaaCAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAAcc < 1:3572748/150‑1 (MQ=255) aaCAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCa > 2:2409174/1‑150 (MQ=255) aaCAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCa > 1:17031/1‑150 (MQ=255) cAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACt < 1:1551048/150‑1 (MQ=255) aGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTa > 2:762839/1‑150 (MQ=255) aGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTa < 1:3174271/150‑1 (MQ=255) aaaGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCa < 1:941693/150‑1 (MQ=255) aaaGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCa > 1:4153027/1‑150 (MQ=255) gTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCaaaa < 1:442707/150‑1 (MQ=255) ttACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAAt > 1:821389/1‑150 (MQ=255) ttACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAAt > 1:23334/1‑150 (MQ=255) ttACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAAt > 1:1229073/1‑150 (MQ=255) tACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAAtt > 2:1233119/1‑150 (MQ=255) tACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAAtt > 2:4457783/1‑150 (MQ=255) tACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAAtt > 1:1620224/1‑150 (MQ=255) tttttCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCAt < 1:588291/150‑1 (MQ=255) tttCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTATTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCAttt < 2:3442481/150‑1 (MQ=255) ttCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCAtttt < 1:1163940/150‑1 (MQ=255) ttCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCAtttt > 1:2670284/1‑150 (MQ=255) ttCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCAtttt < 1:4626609/150‑1 (MQ=255) cAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTa > 1:3362957/1‑150 (MQ=255) cAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTa > 2:2666672/1‑150 (MQ=255) cAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTa > 2:3092835/1‑150 (MQ=255) aCCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAAt < 1:3028600/150‑1 (MQ=255) ccTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATg > 1:3922808/1‑150 (MQ=255) ccTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATg > 2:397549/1‑150 (MQ=255) gTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCGAAATTAGCTCATTTTTAATGCGa > 2:1779217/1‑150 (MQ=255) gTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCAAAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGa > 2:86349/1‑150 (MQ=255) cATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGActc > 2:3411660/1‑150 (MQ=255) atTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCtaa > 1:1059265/1‑150 (MQ=255) tttCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCtaat < 2:1584727/150‑1 (MQ=255) tCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCtaataa < 1:1112014/150‑1 (MQ=255) aaaGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAAtttt > 1:3657977/1‑150 (MQ=255) aaGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTc > 1:1437956/1‑150 (MQ=255) aGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAGCCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCa > 1:3796998/1‑150 (MQ=255) aGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCa > 2:3902355/1‑150 (MQ=255) gATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCAt > 1:426903/1‑150 (MQ=255) gATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCAt > 2:2386210/1‑150 (MQ=255) gATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCAt < 2:2084653/150‑1 (MQ=255) aCTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGaa < 2:4370934/150‑1 (MQ=255) cTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGaaa < 2:4157847/150‑1 (MQ=255) tgagtgagTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAAt > 2:2282172/1‑150 (MQ=255) tgagtgagTTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTGTAGGAAAt > 2:4612092/1‑150 (MQ=255) gagtTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTc < 2:1496262/150‑1 (MQ=255) gagtTTTCAATCACCTTTCAATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTc > 1:1640720/1‑150 (MQ=255) | CCAGCGTTGACCATTTGCGTAACGCTGGTTTTTCTTAGGCATCATGAAATAACGCAGCATTAATGCATAGTGGTTAAGTATAAAAAACAGCAAAGTTACTG‑TTTTTTTCAACCTGTTCATATTTCATAAAGATCTGGCCACTGAGTGAGTTTTCAATCACCTTTCCATCCACCTTATATTAAGCATGGAGGGTTTCAGTTCACGGGCTCATTAGAAAATAATCACAAGATAACCACTATCAAAATTAGCTCATTTTTAATGCGACTCTAATAATTTTCATCTTTAGGAAATAGGTCAG > CP009273/3629274‑3629571 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |