| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,662,660 | T→C | 100% | intergenic (‑112/‑292) | yhjA ← / → treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,662,660 | 0 | T | C | 97.0% | 1019.7 / 9.8 | 267 | intergenic (‑112/‑292) | yhjA/treF | putative cytochrome C peroxidase/cytoplasmic trehalase |
| Reads supporting (aligned to +/- strand): ref base T (5/3); new base C (147/112); total (152/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.94e-01 | |||||||||||
| Rejected as polymorphism: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 267 total aligned reads displayed.
CAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTTATA > CP009273/3662513‑3662806 | cagGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAg > 2:4464805/1‑150 (MQ=255)cagGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAg < 2:4586342/150‑1 (MQ=255)cagGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAg > 2:3625119/1‑150 (MQ=255) ggCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGa < 2:4034564/150‑1 (MQ=255) cGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatc > 1:4160952/1‑150 (MQ=255) gATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatca < 1:1266546/150‑1 (MQ=255) gATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatca > 2:1654225/1‑150 (MQ=255) gATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatca > 2:3613136/1‑150 (MQ=255) aTCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatcaa < 2:3978029/150‑1 (MQ=255) tCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatcaat < 1:236635/150‑1 (MQ=255) tCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGaatcaat < 2:3677229/150‑1 (MQ=255) gTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAAtt < 2:1288599/150‑1 (MQ=255) gTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAAtt < 1:902246/150‑1 (MQ=255) aaTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTAc > 1:1917095/1‑150 (MQ=255) aaTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTAc > 1:982318/1‑150 (MQ=255) aTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACa > 1:1988987/1‑150 (MQ=255) aTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACa > 2:695080/1‑150 (MQ=255) aTACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACa > 1:3921774/1‑150 (MQ=255) tACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACAt < 1:2800648/150‑1 (MQ=255) cGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGa < 2:2420136/150‑1 (MQ=255) gTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGaa < 2:1192531/150‑1 (MQ=255) gTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGaa < 2:3822988/150‑1 (MQ=255) tGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAat < 1:2283063/150‑1 (MQ=255) agaCCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAAGGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAatat < 1:1886719/150‑1 (MQ=255) tattCTTCCCTCACGTTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATaa < 2:2110035/150‑1 (MQ=255) tattCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATaa > 2:4579320/1‑150 (MQ=255) tattCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATaa > 1:1007206/1‑150 (MQ=255) attCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAg > 2:3319744/1‑150 (MQ=255) attCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAg < 1:4367073/150‑1 (MQ=255) attCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAg < 1:3228526/150‑1 (MQ=255) tcttcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGAt > 2:3414017/1‑150 (MQ=255) tcttcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGAt > 2:3679209/1‑150 (MQ=255) ttcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAg > 1:143071/1‑150 (MQ=255) tcCCTCACGGTGGTGAGTTATTGTGACCCAGAAACTTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCACTTACAAGAATATAAACTATCAATAAGATAGc > 2:4159861/1‑150 (MQ=255) tcCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGc > 1:1014297/1‑150 (MQ=255) cccTCACGGTGGTGATTTATTGTGACCCATAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGcc < 1:444027/150‑1 (MQ=255) cccTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGcc < 1:9338/150‑1 (MQ=255) cACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCtgtg < 2:520278/150‑1 (MQ=255) gtggtgAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTa > 2:2961863/1‑150 (MQ=255) gtggtgAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTa > 2:2961887/1‑150 (MQ=255) gtggtgAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTa < 2:1343786/150‑1 (MQ=255) ggtgAGTTATTGTGACCCATAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTAtt < 2:421055/150‑1 (MQ=255) ggtgAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTAtt < 2:2729156/150‑1 (MQ=255) tgAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTAc > 1:3044233/1‑150 (MQ=255) attaaTTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCATATTAcca > 2:3522824/5‑149 (MQ=255) ttGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATc < 1:3363905/150‑1 (MQ=255) tgtgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCa > 1:3564085/1‑150 (MQ=255) tgtgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCa > 1:4586077/1‑150 (MQ=255) tgtgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCa > 1:1496847/1‑150 (MQ=255) gtgACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAg < 2:2049680/150‑1 (MQ=255) aCCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGaa > 1:4300988/1‑150 (MQ=255) cccAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAAt > 2:921185/1‑150 (MQ=255) cccAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAAt > 1:3385375/1‑150 (MQ=255) aaTTTTCCAGAATGCTGCCAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCatat > 2:112843/1‑150 (MQ=255) aaTTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCatat > 2:3366258/1‑150 (MQ=255) tttCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCAt < 1:4310117/150‑1 (MQ=255) ccAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGAATATCATGAt > 2:1965493/1‑150 (MQ=255) cAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGAtt > 2:744905/1‑150 (MQ=255) cAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGAtt > 2:2758631/1‑150 (MQ=255) aGAATGCTTCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTg < 2:3962859/150‑1 (MQ=255) aGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTg > 1:3742951/1‑150 (MQ=255) aaTGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcg < 2:2808751/150‑1 (MQ=255) aaTGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcg > 2:1736354/1‑150 (MQ=255) aTGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTgcgg < 2:4493725/150‑1 (MQ=255) tgcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCgag > 1:1859852/1‑150 (MQ=255) gcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACCGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCgaga < 1:2974198/150‑1 (MQ=255) gcAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCgaga > 1:2515095/1‑150 (MQ=255) aaaCGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGc < 1:1589362/150‑1 (MQ=255) aCGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAg > 2:3210387/1‑150 (MQ=255) ctctGCGAGACAAAGCCATCATAAAAAACAGGGAGATCCGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGAtt < 2:4507435/150‑1 (MQ=255) tctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTg > 2:3162596/1‑150 (MQ=255) ctGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGa > 2:4069234/1‑150 (MQ=255) gagaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGt < 2:1536337/150‑1 (MQ=255) agaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGACTATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGtt > 1:813637/1‑150 (MQ=255) gaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTc < 2:1361983/150‑1 (MQ=255) gaCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTc > 1:2919304/1‑150 (MQ=255) aCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACTTGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCt < 2:4327828/150‑1 (MQ=255) aCAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCt > 2:1551/1‑150 (MQ=255) cAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtg < 2:3059118/150‑1 (MQ=255) aaaGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtga > 1:2135784/1‑150 (MQ=255) aaGCCATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaa > 1:747739/1‑150 (MQ=255) ccATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaat > 2:2895548/1‑150 (MQ=255) ccATCATAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaat > 2:58554/1‑150 (MQ=255) catcatAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatg > 1:4095121/1‑150 (MQ=255) atcatAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatga > 1:575757/1‑150 (MQ=255) tcatAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatgaa > 1:3250848/1‑150 (MQ=255) catAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatgaaa > 1:352235/1‑150 (MQ=255) atAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCtgaaaatgaaaa > 1:4132415/1‑150 (MQ=255) tAAAAAACAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGaaaaa > 1:2495003/1‑150 (MQ=255) aaaaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAaac > 2:2469895/1‑150 (MQ=255) aaaaaaCAGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAaac > 2:2503686/1‑150 (MQ=255) aGGGAGATACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCa < 1:1758575/150‑1 (MQ=255) gaTACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCg < 2:957166/150‑1 (MQ=255) tACGCTTTTTGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGt < 1:690850/150‑1 (MQ=255) cTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTAttt < 2:186880/150‑1 (MQ=255) tttGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTta < 1:2607306/150‑1 (MQ=255) ttGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTtat > 2:4417573/1‑150 (MQ=255) ttGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTtat > 2:1499773/1‑150 (MQ=255) tGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTtata < 2:376537/150‑1 (MQ=255) tGACAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTtata > 1:609346/1‑150 (MQ=255) | CAGGCCGATCGCGGTAATACGTGAGACCATTTTCATTATTCTTCCCTCACGGTGGTGAGTTATTGTGACCCAGAAAATTTTCCAGAATGCTGCAAACGTCTCTGCGAGACAAAGCCATCATAAAAAACAGGGAGATACGCTTTTTGATAGGAATCAATCAATTACATGAATATAAACTATCAATAAGATAGCCTGTGCCTATTACCCAGATCAGGAATGGCATATCATGATTGCGGCGAGAGCAGGATTGAATGTTCTGAAAATGAAAAACAACACCAAATCGGTATTTTTATA > CP009273/3662513‑3662806 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |