| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,774,427 | T→G | 12.9% | intergenic (+50/‑148) | lldD → / → trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,774,427 | 0 | T | G | 12.9% | 450.1 / 11.7 | 181 | intergenic (+50/‑148) | lldD/trmL | L‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent |
| Reads supporting (aligned to +/- strand): ref base T (59/93); new base G (26/2); total (86/95) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.87e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 185 total aligned reads displayed.
AAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGG > CP009273/3774279‑3774570 | aaaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGtt < 1:737697/150‑1 (MQ=255)aaaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCAAACCCACACCCACAGGGAGGGGGGTACGtt > 2:1429271/1‑150 (MQ=255) aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 2:1319436/150‑1 (MQ=255) aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 2:2039244/150‑1 (MQ=255) aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTc < 1:1567618/150‑1 (MQ=255) aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCTAAACCACACCCACAGGGAGAGGGGACCGtta > 2:2610240/1‑149 (MQ=255) aTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg < 1:3579033/150‑1 (MQ=255) aTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg < 1:1479257/150‑1 (MQ=255) aTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg < 2:3276739/150‑1 (MQ=255) aTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg < 1:2781508/150‑1 (MQ=255) aTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCg < 2:3337155/150‑1 (MQ=255) tCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCgg < 1:719766/150‑1 (MQ=255) cAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtg < 1:218894/150‑1 (MQ=255) aGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgt < 1:2497147/150‑1 (MQ=255) aGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCAAAACCACAACCACAGGGAGAGGGGACCCGTCGGCGCggt > 1:4375555/1‑150 (MQ=255) gAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCGAACCCTCAACCGCAGGGAGTGGGGACCGTTCCGCGCtggaat > 1:3376182/1‑146 (MQ=255) ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCAAACCCACACCCACAGGGAGAGGGGACCCTTCGGCGCtgt‑attgaaa > 2:1827211/1‑145 (MQ=255) ttACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCGCACCCAAACCCACACCCACAGGGCGAGGGGCCCCGTCGGCGCGGG‑ATGTAca > 2:3327042/1‑149 (MQ=255) cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTc < 1:1155353/150‑1 (MQ=255) cAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTc < 1:1155352/150‑1 (MQ=255) aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCa < 2:4133794/150‑1 (MQ=255) aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCa < 2:4133791/150‑1 (MQ=255) aaGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTTCGCCCCCACACCCAAAACCACTACCACAGGGAGGAGGGCCCCGTAGGCGCAGT‑ATGTAcaaccaca > 2:3200564/1‑143 (MQ=255) aTTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACCCCCAAACCCTCAACCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCacacac > 2:2957573/1‑148 (MQ=255) aTTCGCTGGTGCAGGGACTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCAAAACCACACCCACAGGGAGAGGGGACCCGTCGGCGCGGT‑ATGTACACCCacacac > 2:3339733/1‑148 (MQ=255) ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCActct < 1:146046/150‑1 (MQ=255) gCTGGTGCAGGGGCTGTGTAAAGAGGTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGaa < 2:838053/150‑1 (MQ=255) cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGaaa < 2:4066790/150‑1 (MQ=255) ggTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTTCGCCCCCACACCCAAACCCACTCCCTCCGGGAGAGGGGACCGTTCGGCGCGGT‑ATGTTCACCCACACTCAGAAACg > 2:2621231/1‑150 (MQ=255) gCAGGGGCTGGGTCAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGaca < 2:606722/150‑1 (MQ=255) gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGaca < 2:606728/150‑1 (MQ=255) cAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCCCCCGAACCCACACCCACAGGGGGAGGGGACCGTTAGGCGCGGT‑ATGTACTCCCGCAAACAGGAACGacac > 2:4555304/1‑150 (MQ=255) cAGGGGCTGGGTAAAGAGGTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGacac < 2:3922654/150‑1 (MQ=255) gggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGc < 1:4587962/150‑1 (MQ=255) ggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCa < 2:184182/150‑1 (MQ=255) gCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCAc < 1:869475/150‑1 (MQ=255) ggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCtt < 1:3027736/150‑1 (MQ=255) ggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCtt < 1:173838/150‑1 (MQ=255) aaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCtttttt < 1:462189/150‑1 (MQ=255) agtggtGCCTGCGGCACTGGCTCCCATGGCGTAAGGGTATGCGGCATATTCGTTTGCGCCCCCTCAACCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCttttttt < 2:3979653/145‑1 (MQ=255) agagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCttttttt < 2:1131902/150‑1 (MQ=255) gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtc < 2:1627406/150‑1 (MQ=255) agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtct < 1:1446036/150‑1 (MQ=255) agTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTATTTTtct < 2:1516484/150‑1 (MQ=255) ttGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTcc < 1:3726864/150‑1 (MQ=255) tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGGGCCCCCCCGCCCAAACCCACACCCGCAGGGGGGGGGGGCCGGTCGGCGCGGT‑ATGTAATCCCGCCCACAGAAAAGACACCCCCCACattttttgggcc > 1:2986980/1‑145 (MQ=255) tGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCCCCCCCAAAACCAAAACCACAGGGGGAGGGGGCCGGTAGGCGCGGT‑ATGTAAACCCACACACAGAAAACACACCCCCCACtttttttttacc > 1:4123093/1‑145 (MQ=255) gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCt < 1:4331728/150‑1 (MQ=255) ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTc < 1:3569694/150‑1 (MQ=255) gCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcc < 1:3643593/150‑1 (MQ=255) cGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGGGCCCCCGCACCCGAACCCACTGCCACAGGGGGAGGGGGCCCGTGGGCGCGGG‑GTGTTCGACCGCACTCTGAAAAGACCCCCCACACTTTTTTTGTACCTCGccc > 2:2024263/1‑150 (MQ=255) cGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGccc < 1:3648638/150‑1 (MQ=255) ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcccc < 1:2615472/150‑1 (MQ=255) gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCAAAACCACAACCGCACGGAGAGGGGGCCGGTGGGCGCGGT‑ATTTAAAACCTCACACAGCAAACACACCCCCCGATTTTTTTGTACCACGcccca > 2:492186/1‑149 (MQ=255) gCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCGCCACCAAACCCTCGCCCTCAGGGGGGGGGGCCCGTTGGGGGCGGT‑TTGTACTCCCACACAGAGAAACGACACCGCACTCGTTTTTTATCCCGCGcccca > 2:1641318/1‑149 (MQ=255) aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTTCGCCCCCGCACCCCAACCCACAACCGCAGGGGGGGGGGGCCGTTAGGCGCTGT‑GTGTTCACCCACACAAAGAAACGACACCGCCCGCATTTTTTATACCACGCCCCGcc > 2:4635107/1‑150 (MQ=255) aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTcc < 1:2795304/150‑1 (MQ=255) cTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTTCGCCCCCACACCCAAAAACACTACCACAGGGGGTGGGGACCCGTCGGGGCTGT‑TTGTTCTCCCGGACGCTGAAAACAAACCGCACTCTTTTTTTGTGCCGCGCCCCGCCggggg > 2:2263713/1‑149 (MQ=255) tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGgag < 2:674683/150‑1 (MQ=255) tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCAAACCCACTCCCAAAGGGGGTGGGGGCCGGTCGGCGCTGT‑ATTTAAGCCCGCACACGGAAAAGACACCCCACACATTTTTTGTACCACGCCCCACCCGGgag > 2:1345841/1‑150 (MQ=255) cccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGgaga < 1:526801/150‑1 (MQ=255) cccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCAAAACCACAACCACAGGGTGGGGGGGCCCGTAGGCGCGGG‑TTGTTCACCCACACACGGAAAAGGCCCCCCACACTTTTTTTATACCACGCCCCACCGGGggga > 2:3241037/1‑150 (MQ=255) cATGGCGAAAGGGAATGCGGCTTTGTCGTTTGCGCCCCCTCCCCCTACCCGTCGCCCTCCGGGAGTGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAgg < 1:134157/150‑1 (MQ=255) tGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc < 1:1338832/150‑1 (MQ=255) tGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCACACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGc < 1:2376210/150‑1 (MQ=255) ggCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGcc < 1:3576669/150‑1 (MQ=255) ggCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCGAAACCACACCCGACGGGGGAGGGGACCCGTCGGCGCTGT‑ATGTACACCCTCACTATGGAAAGACACCCCACACTTTTTTTATCCCACGCCCCACCGGGGCGAGGGcc > 2:2080665/1‑150 (MQ=255) cGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACAACCGAAACCACAACCGCAGGGAGAGGGGGCCCTTCGGCGCGGT‑ATGTTCTCCCACACACAGAAACGACCCCGCCCACTTTTTTTATCCCCCGCCCCGCCCGGGGCGGGGCCgg > 2:751588/1‑150 (MQ=255) gAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCggg < 2:1583041/150‑1 (MQ=255) gAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCGAACCCGAAACCGAGACCACCGGGAGATGGGACCGTTCGGCGCGGG‑TTGGAAACCCGCACACAGGAACGACCACGCCCACTTTTTTTATACCGCGGCCCACCGGGGGGGGGGCCggg > 2:4439760/1‑150 (MQ=255) aaaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCgggg < 2:1524383/150‑1 (MQ=255) aaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGGTCGGCGCTGT‑ATGTACTCCCTCACACTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt < 2:3741179/150‑1 (MQ=255) aGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTg < 1:1208198/150‑1 (MQ=255) aaTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAggg < 2:499900/150‑1 (MQ=255) ggCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa < 1:3991466/150‑1 (MQ=255) ggCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa < 1:1853166/150‑1 (MQ=255) ggCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa < 1:1853161/150‑1 (MQ=255) ggCATAGTCGTTTGCGCCCCCACACCCAAAACCAAACCCACAGGGAGAAGGGGCCCGTCGGCGCCGTAATGAAAACCC‑CCCACGGAAACCACCCCCCCCACATTTTTTATACCAAGCCCCACCCGGGGGAGGGCCCGGGGGGGGGGaaaa > 2:3594033/1‑150 (MQ=255) tAGTCGTTTGCGCCCCCACACCCTAACCCTCTCCCACAGGGAGAGGGGACCGTTCGGCGCTGT‑AATTACTCCCTCACTCTGAAACGACACCGCACACTTTTTTTCTCCCTCGCCCCACCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGcc > 2:1055642/1‑150 (MQ=255) tCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGGGGGGAAAAGGCCGCa > 2:876764/1‑150 (MQ=255) tCGTTTGCGCCCCCGCACCCAAAACCACTCCCACAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCGCACTCTGAAACGACACCGCACTCTTTTTTTATCCCGCGCCCCGCCGGGGCGAGGGCCGGGGTGAGGGGAAAAGGCCGCa > 2:3659351/1‑150 (MQ=255) cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCaa > 2:2960928/1‑150 (MQ=255) cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCGCACCaa > 2:2960420/1‑150 (MQ=255) ccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAt > 2:1332240/1‑150 (MQ=255) tCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt > 1:3608802/1‑150 (MQ=255) cACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtttt > 1:3652252/1‑150 (MQ=255) cTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc > 2:985014/1‑150 (MQ=255) aaCCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTa > 1:1824919/1‑150 (MQ=255) ccTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc > 1:4153529/1‑150 (MQ=255) ctctCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCt > 1:1582263/1‑150 (MQ=255) ctcCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc > 2:2705856/1‑150 (MQ=255) cccTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc > 2:2916467/1‑150 (MQ=255) tCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg > 1:1432479/1‑150 (MQ=255) cAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc > 1:2499183/1‑150 (MQ=255) cAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGc > 1:3835660/1‑150 (MQ=255) gggAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc > 1:4004055/1‑150 (MQ=255) gggAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTGTCTGCTATCCTGCCCCCGCAc > 2:3165048/1‑150 (MQ=255) agagGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTaa > 1:4476102/1‑150 (MQ=255) agGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg > 1:371360/1‑150 (MQ=255) ggACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg > 1:3164387/1‑150 (MQ=255) | AAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGT‑ATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGG > CP009273/3774279‑3774570 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |