| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,519,217 | A→T | 14.2% | F282I (TTC→ATC) | sgcC ← | putative PTS system EIIC permease component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,519,217 | 0 | A | T | 14.2% | 795.9 / 106.7 | 275 | F282I (TTC→ATC) | sgcC | putative PTS system EIIC permease component |
| Reads supporting (aligned to +/- strand): ref base A (116/120); new base T (18/21); total (134/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.63e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
Only 100 of 279 total aligned reads displayed.
CAGGTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGC > CP009273/4519068‑4519366 | gTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAata < 1:1263511/150‑1 (MQ=255) tGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATAttt > 1:2351163/1‑150 (MQ=255) cGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCt > 2:3409277/1‑150 (MQ=255) gggTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaa < 1:2851575/150‑1 (MQ=255) gTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGgaaga < 2:4347930/150‑1 (MQ=255) gTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaaga < 2:3858358/150‑1 (MQ=255) tAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGgaagaa > 2:2061252/1‑150 (MQ=255) acacTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACt > 2:4567392/1‑150 (MQ=255) acacTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACt > 2:3689315/1‑150 (MQ=255) acacTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACt > 2:1624641/1‑150 (MQ=255) cacTTTGGTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACtt < 1:1224614/150‑1 (MQ=255) acTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACttt < 1:730930/150‑1 (MQ=255) tttGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCGGCGTCACAGCAGTATCCAGACCGATCTACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCt < 2:4622609/150‑1 (MQ=255) tttGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCt < 1:4579933/150‑1 (MQ=255) tttGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCt > 1:420162/1‑150 (MQ=255) tttGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCt < 1:1578261/150‑1 (MQ=255) gttgCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGc > 1:2466533/1‑150 (MQ=255) tgCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCAc < 2:3301706/150‑1 (MQ=255) cccGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCg < 1:495446/150‑1 (MQ=255) gTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCgg > 1:1044629/1‑150 (MQ=255) aaaTGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGgaga > 1:2605090/1‑150 (MQ=255) aaTGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGAt < 2:1456071/150‑1 (MQ=255) ggCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGgcag > 1:4099248/1‑150 (MQ=255) aGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAgg > 1:476926/1‑150 (MQ=255) aGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAgg > 2:1733172/1‑150 (MQ=255) ttAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCt < 1:836679/150‑1 (MQ=255) ttAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCt < 1:4496138/150‑1 (MQ=255) tAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTc > 2:4303982/1‑150 (MQ=255) tAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTc < 2:2439715/150‑1 (MQ=255) aaCATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTca > 2:1897561/1‑150 (MQ=255) aaCATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTca < 2:1795986/150‑1 (MQ=255) ttatatTGGGTATCAGTAGCAGACCGTCAGCAATTGTGGTTGGATGCCCGATCGTCTCAGCAGTATCCAGACCGATATTCACTTATCGTACTTTGAATTATTTCTGGAAGAACTTTCTTGCACCGTGGGAGATGGTCATCAGGCCCTcaa < 2:2597117/148‑1 (MQ=255) aCATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTcaa < 2:3597307/150‑1 (MQ=255) cATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTcaac > 1:2956899/1‑150 (MQ=255) tAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTcaacaa < 2:716649/150‑1 (MQ=255) tAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTcaacaa < 2:1706211/150‑1 (MQ=255) aTGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATc < 1:318480/150‑1 (MQ=255) aTGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATc < 1:2185927/150‑1 (MQ=255) tgcgTATCATTAGCAGACCGACAGCAATGGTGTTAGGAAGCCCCAGCGTCACAGCAGAATCAAGACCGATATAAACTTCACGACCTTTGAAATAATTCTTGAAGAACTATCTTGCACCATCAGAGAAGGGCAGCAGGCCCACAACACTCa > 2:2222137/4‑150 (MQ=255) tGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCa > 1:4245150/1‑150 (MQ=255) gggTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAg < 1:3837187/150‑1 (MQ=255) gggTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAg < 2:1253012/150‑1 (MQ=255) gggTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAg < 2:2787822/150‑1 (MQ=255) ggTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAgg > 1:357153/1‑150 (MQ=255) aTCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCgg < 2:542235/150‑1 (MQ=255) gTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCa > 2:866931/1‑150 (MQ=255) gCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgc < 1:2400281/150‑1 (MQ=255) gCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATgc > 1:2578912/1‑150 (MQ=255) cGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGa < 1:3419552/150‑1 (MQ=255) cGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGa < 1:364094/150‑1 (MQ=255) cAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGaaca > 2:3681384/1‑150 (MQ=255) cAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGaaca > 2:795385/1‑150 (MQ=255) aGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGaacaa > 1:2113887/1‑150 (MQ=255) aaTGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAacac > 1:2907718/1‑150 (MQ=255) aTGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACAcc > 2:4249559/1‑150 (MQ=255) aTGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACAcc > 2:4403331/1‑150 (MQ=255) ggtggtTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCAt < 2:2033718/150‑1 (MQ=255) ttGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTg < 1:691602/150‑1 (MQ=255) ttGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTg < 1:2748385/150‑1 (MQ=255) ttGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTg < 2:1202064/150‑1 (MQ=255) tGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGc > 1:1394542/1‑150 (MQ=255) ggATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGcc > 1:968553/1‑150 (MQ=255) gCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCaa > 1:1006372/1‑150 (MQ=255) ccccAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAAc < 2:4182689/150‑1 (MQ=255) cccgCGTCACAGCAGTTTCCAGACCGATATCCACTTCACGTCCTTTGAAATATTTCTGGAAGATCTTTCTTGCACCGACGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCAGGCGCGGGAACAACACCATGATTGCCGCAACgg < 2:3049629/147‑1 (MQ=255) aGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTa > 1:306851/1‑150 (MQ=255) aGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTa > 2:129134/1‑150 (MQ=255) aGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTa > 2:2944505/1‑150 (MQ=255) cGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAat < 1:1265585/150‑1 (MQ=255) cacaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatcat < 1:3738922/150‑1 (MQ=255) cacaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatcat < 1:4379358/150‑1 (MQ=255) cacaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTATGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatcat < 2:193845/150‑1 (MQ=255) acaGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAatcatc < 2:3440865/150‑1 (MQ=255) cagcagTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAAtcatca > 1:2828413/1‑150 (MQ=255) cagcagTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAAtcatca < 1:2795618/150‑1 (MQ=255) agcagTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAg < 1:1966308/150‑1 (MQ=255) agcagTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAg < 2:2825170/150‑1 (MQ=255) gcagTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGa < 1:3483231/150‑1 (MQ=255) cagTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGAc > 2:4609205/1‑150 (MQ=255) gTATCCAGACCGATATACACTTCACGTCCTTTGATATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTg < 1:1532486/150‑1 (MQ=255) gTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTg < 2:3982886/150‑1 (MQ=255) tCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCTACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGgcg < 1:184645/150‑1 (MQ=255) ccAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGgcgc > 1:572284/1‑150 (MQ=255) ccAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGgcgc > 1:447682/1‑150 (MQ=255) aGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCaa > 2:2166989/1‑150 (MQ=255) aGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCaa > 1:776469/1‑150 (MQ=255) gACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAAc < 1:1337425/150‑1 (MQ=255) gACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAAc > 1:93656/1‑150 (MQ=255) ccGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCt < 1:114911/150‑1 (MQ=255) cGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCtt > 2:3763645/1‑150 (MQ=255) gATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCttt > 1:2986620/1‑150 (MQ=255) gATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCttt < 2:1528716/150‑1 (MQ=255) atatACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTa > 1:2178299/1‑150 (MQ=255) taCACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAg < 2:3710986/150‑1 (MQ=255) cacTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGcc > 2:2690147/1‑150 (MQ=255) tCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCa < 1:333956/150‑1 (MQ=255) tCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgc > 2:4141167/1‑150 (MQ=255) tttGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAgccgc > 2:3956672/1‑150 (MQ=255) tGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCa > 2:3841317/1‑150 (MQ=255) tGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCa > 1:1648106/1‑150 (MQ=255) | CAGGTCTGCGAGGGGTAACACTTTGTTGCCCGGTAAAATGCTGGCCAGAATTAACATAATGGGTATCAGTAGCAGACCGACAGCAATGGTGGTTGGATGCCCCAGCGTCACAGCAGTATCCAGACCGATATACACTTCACGTCCTTTGAAATATTTCTGGAAGAACTTTCTTGCACCGTCGGAGATGGGCAGCAGGCCCTCAACAATCAGGCGGATCATGCGCGGGAACAACACCATGATTGCCGCAACGGTAATCATCAGACTGGCGCAACCTTTAAAGCCTTCACCAGCCGCCAGGC > CP009273/4519068‑4519366 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |