| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,559,831 | G→T | 39.6% | intergenic (+96/+148) | yjiP → / ← yjiR | pseudogene, transposase_31 family protein/putative DNA‑binding transcriptional regulator/putative aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,559,831 | 0 | G | T | 39.6% | 368.8 / 310.2 | 286 | intergenic (+96/+148) | yjiP/yjiR | pseudogene, transposase_31 family protein/putative DNA‑binding transcriptional regulator/putative aminotransferase |
| Reads supporting (aligned to +/- strand): ref base G (85/87); new base T (56/58); total (141/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 287 total aligned reads displayed.
TTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTATTTCGAATTT > CP009273/4559685‑4559980 | ttAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATAcc < 1:4269444/150‑1 (MQ=255) tAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCt < 1:2784409/150‑1 (MQ=255) aaGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTg > 1:3873929/1‑150 (MQ=255) aGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTgg < 1:3809813/150‑1 (MQ=255) ggCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGt > 2:1966084/1‑150 (MQ=255) gCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTc > 1:2628898/1‑150 (MQ=255) cAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCa < 1:3542177/150‑1 (MQ=255) aGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAg > 2:1985011/1‑150 (MQ=255) aGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAg < 1:3451036/150‑1 (MQ=255) aGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAg < 2:3969339/150‑1 (MQ=255) cccTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGc < 1:313424/150‑1 (MQ=255) ttGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGtt > 1:4003305/1‑150 (MQ=255) tGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTc < 2:3628679/150‑1 (MQ=255) tGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTATACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTc < 1:2331349/150‑1 (MQ=255) tgagcgtgagcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACAt > 1:1806920/1‑150 (MQ=255) gagcgtgagcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATg > 1:1391546/1‑150 (MQ=255) gtgagcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCAt > 2:1785998/1‑150 (MQ=255) gtgagcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCAt > 1:1637811/1‑150 (MQ=255) gtgagcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCAt > 1:461094/1‑150 (MQ=255) tgagcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATc < 1:2125024/150‑1 (MQ=255) agcgCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCg < 1:412208/150‑1 (MQ=255) gcgcTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCgg < 1:686837/150‑1 (MQ=255) gcTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCa > 2:367929/1‑150 (MQ=255) aTTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGa > 2:1240009/1‑150 (MQ=255) cATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACa < 2:2159545/150‑1 (MQ=255) aTGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACaa < 2:206232/150‑1 (MQ=255) tGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACaaa < 2:2515043/150‑1 (MQ=255) gCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGc < 1:3934906/150‑1 (MQ=255) gCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGc < 1:707966/150‑1 (MQ=255) cTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCg > 2:4471019/1‑150 (MQ=255) cTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCg > 2:3331155/1‑150 (MQ=255) aaGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTAc < 1:1737477/150‑1 (MQ=255) aaGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTAc > 2:4629187/1‑150 (MQ=255) agagCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCAGGCATGAACAAAGCGTACt > 2:2225273/1‑150 (MQ=255) agCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACttt < 2:3404709/150‑1 (MQ=255) agCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACttt < 2:3197377/150‑1 (MQ=255) agCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACttt < 2:4104055/150‑1 (MQ=255) aaTCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCtt > 1:861735/1‑150 (MQ=255) aTCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTa < 2:1073558/150‑1 (MQ=255) cAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAAt < 1:2800440/150‑1 (MQ=255) agagACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAAtt > 1:922275/1‑150 (MQ=255) gagaCGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTc > 2:2705102/1‑150 (MQ=255) aCGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAgg < 2:3253976/150‑1 (MQ=255) ggATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCt > 2:572766/1‑150 (MQ=255) ggATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCt > 2:2623006/1‑150 (MQ=255) ggATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCt < 1:3366922/150‑1 (MQ=255) cGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGc > 2:493267/1‑150 (MQ=255) aaaGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGAt < 2:1194974/150‑1 (MQ=255) agcagcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGa > 2:3479842/1‑150 (MQ=255) gcagcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGAc < 2:801830/150‑1 (MQ=255) agcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGAccc > 1:2832040/1‑150 (MQ=255) agcCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGAccc > 2:731472/1‑150 (MQ=255) gATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCaa > 2:1366116/1‑150 (MQ=255) cgcTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGAt < 1:4245385/150‑1 (MQ=255) cgcTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGAt > 2:3533534/1‑150 (MQ=255) tATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATaaa < 2:2919937/150‑1 (MQ=255) tATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATaaa < 1:2962687/150‑1 (MQ=255) aTGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATaaaa < 2:4161147/150‑1 (MQ=255) aTGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATaaaa < 1:3677576/150‑1 (MQ=255) tGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAAc < 1:101400/150‑1 (MQ=255) tGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAAc > 1:4071066/1‑150 (MQ=255) ttATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAg > 1:1591638/1‑150 (MQ=255) ttATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAg > 1:2441056/1‑150 (MQ=255) aGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTcaca > 2:3180077/1‑150 (MQ=255) ggTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAg < 2:2876781/150‑1 (MQ=255) gTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAgg > 1:581310/1‑150 (MQ=255) cTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGtt < 2:3003613/150‑1 (MQ=255) tACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTa < 1:2744728/150‑1 (MQ=255) cATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATg < 2:3755380/150‑1 (MQ=255) tAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCa > 2:2469815/1‑150 (MQ=255) aCCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATg < 1:248622/150‑1 (MQ=255) aaaTATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGaa > 1:2216412/1‑150 (MQ=255) aaTATATTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGaaa > 1:3568519/1‑150 (MQ=255) aaTATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGaaa < 2:2906124/150‑1 (MQ=255) atatatTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAAt > 2:1504769/1‑150 (MQ=255) tatatTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATc > 1:1220146/1‑150 (MQ=255) tatTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAg < 1:3380656/150‑1 (MQ=255) tatTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAg < 1:1156605/150‑1 (MQ=255) atTGAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAgg < 2:436947/150‑1 (MQ=255) atTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAgg > 1:1740849/1‑150 (MQ=255) atTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAgg > 1:97221/1‑150 (MQ=255) gAACTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGgcgc > 1:4447149/1‑150 (MQ=255) gAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGgcgc > 2:2407433/1‑150 (MQ=255) gAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGgcgc > 2:3305163/1‑150 (MQ=255) gAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGgcgc > 2:1864575/1‑150 (MQ=255) aCTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCtt < 2:1377886/150‑1 (MQ=255) cTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTc > 2:902335/1‑150 (MQ=255) cTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTc > 2:4232907/1‑150 (MQ=255) cTTTAAAGATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTc > 2:1903967/1‑150 (MQ=255) aaaGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGACATCAGGCGCTTcgccg > 2:630431/1‑150 (MQ=255) gATTTTTGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTa < 2:3999880/150‑1 (MQ=255) gATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTa < 1:4350623/150‑1 (MQ=255) aTTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTAt > 1:3947394/1‑150 (MQ=255) aTTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTAt < 2:3572735/150‑1 (MQ=255) tttttGTATACCTGGTCAGGCGTTCACATGGCATCCGGCTTGAACAAAGTGTACTTTGCTTCATTCAGGCTGGATCGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTAtt < 2:4031459/150‑1 (MQ=255) ttgtGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTAttt < 1:3969496/147‑1 (MQ=255) tttGTATACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTATTTc < 1:2374528/150‑1 (MQ=255) ttGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTATTTCg < 1:1907866/150‑1 (MQ=255) gTAGACCTGGTCAGGCGTTCACATTGCATCAGGCATGAACAATGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTATTTCGaa < 1:570438/150‑1 (MQ=255) tAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTATTTCGAAt > 1:1584062/1‑150 (MQ=255) | TTAAGGCAGCCCTTGCCTGAGCGTGAGCGCTATTCATGGCTCAAGAGCTAATCAGAGACGGATGACAAACGCAAAGCAGCCTGATGCGCTATGCTTATCAGGTCTACATAACCCATTAAATATATTGAACTTTAAAGATTTTTGTAGACCTGGTCAGGCGTTCACATGGCATCCGGCATGAACAAAGCGTACTTTGCTTAATTCAGGCTGGAACGTGGCGATGACCCAGCAAAGATAAAACGAGTCACAGGTTATGCATGAGAGGAAATCAGGCGCTTCGCCGCTATTTCGAATTT > CP009273/4559685‑4559980 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |