| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 777,175 | A→T | 11.7% | intergenic (+67/‑366) | lysQ → / → nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 777,175 | 0 | A | T | 11.7% | 345.0 / 4.0 | 165 | intergenic (+67/‑366) | lysQ/nadA | tRNA‑Lys/quinolinate synthase, subunit A |
| Reads supporting (aligned to +/- strand): ref base A (94/42); new base T (3/22); total (97/68) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.39e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 171 total aligned reads displayed.
CAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTG > CP009273/777029‑777324 | cAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGt < 1:2031892/150‑1 (MQ=35)cAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTGTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGt > 2:2969067/1‑150 (MQ=25) aaGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGtt < 2:661716/150‑1 (MQ=34) aGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGttt < 1:3923450/150‑1 (MQ=33) ggggTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttg > 2:1554189/1‑150 (MQ=32) gTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagt > 2:3459874/1‑150 (MQ=32) gTTAGCTCCGTTGGTAGAGCAGTTGACTATTACTCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTttgagttga < 2:2627393/150‑1 (MQ=12) aGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAgcg > 1:847050/1‑150 (MQ=32) aGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAAACTGAAGCAGGTTTGAGTTGAgcg > 1:2678469/1‑150 (MQ=17) gCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAgcgc > 1:3146542/1‑150 (MQ=32) aGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATATGCGATACTCAAAGATACGATGCTGCAGCAGGTTTGAGTTGAGCGCAGCg > 2:1992747/1‑150 (MQ=255) tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGaaa > 1:2163054/1‑150 (MQ=32) tGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACAAAAAGATACGAACCTGAAGCAGGTTAGAGGTGAGCTCAGCGaaa > 1:3762815/1‑150 (MQ=11) ggTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTCTCTGCGATACACAAAGATACGAACCTACAGCAGTTTTGAGATGAGCGCAGCGCaac > 2:1878478/1‑150 (MQ=11) gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGATGAGCGCAGCGAACCAACg > 2:2105184/1‑150 (MQ=17) gagCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCAGCGATACTGAAATTTGAGAAACTGCAGCAGGTTAGAGATGAGCGCATCGaagaaccg > 2:2510195/1‑144 (MQ=11) cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGTTTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAg > 2:1052222/1‑150 (MQ=17) cAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAg > 1:4351909/1‑150 (MQ=32) aGTTGACTTTTAATCAATTGGTCGCAGGTTCTAATCCTGCACGACCCACCAATTTAAAAAA‑GCGCCATAAAGGCGATTTTTTGCTATCTGCTATACTCAAAGATTCGAACCTGCAGCTGGTTTGAGTTGAGCGCAGCGAAACAACGGAGc < 2:473846/150‑1 (MQ=11) aaTTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACgg > 1:1001582/1‑150 (MQ=32) tGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGccc > 2:2024413/1‑150 (MQ=32) ggTCGCTGGTTCGAATCCTGCCCGACCCACCAATGTAAAAAA‑GCGCCCTAACGGCGCTTTTTTGATATCTGCTATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCg < 2:3132687/150‑1 (MQ=11) ggTCGCTGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCg < 1:3369991/150‑1 (MQ=17) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGTACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCg > 1:678822/1‑150 (MQ=17) ggTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCg > 2:2357174/1‑150 (MQ=32) tCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGaa > 2:2852626/1‑150 (MQ=32) gCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAgg > 1:2886818/1‑150 (MQ=32) cAGGTTCTAATCCTGCACGACCCACCAAGTTAAAAAC‑GCGCCCTAAAGGCGATTTTTTGCTTTCTGGTATACTCAAAGATTCGACCCTTCAGCAGTTTTGAGTTGAGCGCAGCGAAAAAACGGAGCCGCTCGCGGCGACGGCCCGAAggg < 2:3833495/150‑1 (MQ=11) cAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTGAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAggg > 1:1409318/1‑150 (MQ=17) ggTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcg > 1:3504998/1‑150 (MQ=32) gtactaaTCCTGCACGACCCACCAATGAAAAAAA‑GCGCCCTAATGGCTCTTTTTTGCTATCTGCGATACTCAACGATTCGAACCGGCAGCTGGTTTTAGTTGCGCGCAGCGAAACCACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcga < 2:3124604/145‑1 (MQ=11) gtccaccccTGCACCACCCACCAATTAAAAAAC‑GCCCCCTACCGCCGATTTTTTGCTATCTGCGATACTCAAATATCCTACCCGGCCGCTGTTTTGTTTTGCGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgag < 1:2736790/143‑1 (MQ=2) ctaaTCCTGCACGACCCACCAATGTAAAAAC‑GCGCCCTACCGGCGCTTTTTTGCTATCTGCGATACTCAATGATTCTACCCTGCAGCAGGTTTGAGTTGCGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcg < 1:645049/148‑1 (MQ=11) cGAATCCTGCACGACCCACCAATGTAAAAAA‑GCTCCCTAAAGGCGCTTTTATGCTATCTGCGATACTCAAAGAGTCGAACCTGCAGAAGCTTTGAGTTGAGCGCAGCGAAGAAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcg > 2:4528303/1‑150 (MQ=11) cGAAGCCTGCACGACCCCCCAATGTAAAAAA‑GCGCCCTCAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCTGGTTTGCGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcg < 2:2761404/150‑1 (MQ=11) cGAACCCTGCACGACCCACAATTGTAAAAAA‑GCGCCCTACAGGCGTTTTTTTGGTATCTGCTATACTCAAATATTCGAACCTGCAGCTGGTTTGTGTTGCGCGCCGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcg < 1:4428647/150‑1 (MQ=11) taaTCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCAAAAGGCGATTTTTTGCTATCTGCGATACTCAAATATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcga < 1:357661/149‑1 (MQ=12) gAATCCTGCCCGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACGACAAGTTGCGAACCTCCAGCTGGTTTGAGTTGACCGCAGAGAACCGCCGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcga > 2:4580328/1‑150 (MQ=11) gAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCCAAGATTCGAACCTGCAGCAGGTTTGAGGTGAGCGCATCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcga > 2:1513486/1‑150 (MQ=12) gAATCCTGCACGACCCACCAAGGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAGAGATTCGAAGCTGCAGCAGGTTTGAGGTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcga > 2:4580310/1‑150 (MQ=255) gAATCCTGCACGACCCACAAATGTAAAAAA‑GCGCCCTAAAGGCGATTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGgcgagcga < 1:357591/150‑1 (MQ=17) aaTCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGagcgaa < 1:4169368/150‑1 (MQ=32) tCCTGCACGACCCACCAATTTAAAAAT‑GCGCCCTAACGGCTCTTTTTTGCTATATGCTATACTCAACGATTCTACCCTGAAGCCGGTTTTAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGagcgaagc < 1:2486711/150‑1 (MQ=11) ccTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGagcgaagcg > 1:4579482/1‑150 (MQ=32) cTGCACGACCCACAAATGTAAAAAA‑GCGCCCTAACGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGagcgaagcga < 2:1039998/150‑1 (MQ=17) tGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAg > 2:3577005/1‑150 (MQ=32) cACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTc < 2:4062122/150‑1 (MQ=32) aCCCACCAATTAAAAAAA‑GCGCCCCAACGGCGTTTTTTTGCTATCTGCGATACTAAAATATCCCAACCTGCAGCTGTTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATcc < 1:1738877/150‑1 (MQ=11) aCCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCCAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATcc > 1:511838/1‑150 (MQ=17) cccACCAATTTAAAAAA‑CCGCCCTAACGGCGCTTTTTTGCTATCTGCTATACTCAAAGATTCGAACCTGCAGCTGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCt < 1:1776730/150‑1 (MQ=11) ccaaccaATTAAAAAAT‑CCGCCCAAACGGGGCTTTTTTGCTATCTGCCATACACAAATATTCCACCCGGCAGCTGTTTTGTGTGGACCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCt < 1:4271909/147‑1 (MQ=11) cccccaATTTAAAAAACCCGCCCTAACGCCGATTTTTTGCTTTCTGCTATACTCAATTATTCCACCCTGCAGCGGTTTTGTGTTGAGCGCCGCCAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCt < 1:4271880/147‑1 (MQ=11) caccaATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGc > 2:4216445/1‑150 (MQ=32) caccaATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCAGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGc > 2:2426804/1‑150 (MQ=17) ccaCTGTAAAAAA‑GCGCCCTACCGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCTGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCAc < 2:3676168/150‑1 (MQ=255) caATTTAAAAAA‑GCGCCCTAACGGCGATTTTTTGCTATCTGCGATACTCAAATATTCGAACCTGCAGCTGTTTTGAGTTGAGCGCAGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACg < 1:2282086/150‑1 (MQ=11) aaTGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGa > 1:1993373/1‑150 (MQ=32) aTGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGAc > 1:1031795/1‑150 (MQ=32) gTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGAccc > 2:3796283/1‑150 (MQ=32) aaaaat‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCTGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGTAGGGCGAGCGAAGCGAGTCATCCTGCACGACccac > 2:3108774/1‑150 (MQ=12) aaa‑CCGCCCAAACCGCGCTTTTTTGCTATCTGCGATACCAAAAGATTCCAACCTGCAGCTGTTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCaa < 1:3164438/150‑1 (MQ=11) aa‑GCGCCCTACCCGCGCTTTTTTGCTATCTGCCACACTCAAAGATTCGAACGTGCAGCTGGTTTTAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAAt < 1:1068233/150‑1 (MQ=11) aa‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAAt > 1:4246063/1‑150 (MQ=32) cccccTAAAGGCGCTTTTTGGCTATCTGCGATACCAACAGTTTCGAACCTCCAGAAGTTTGGAGTTGCGCGCTGCGAATCTACTGAGCGGCTCTCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTa < 2:2549928/148‑1 (MQ=11) gcCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTaa > 1:4083273/1‑150 (MQ=32) gcCCTAAAGGCGCTTTTTTGCTATATGCGATACTCAAATATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCCCCAATGTaa > 1:1358093/1‑150 (MQ=12) ccaccccgcgcTTTTTTGCTCTCTGCGATACTCAACGATTCGAACCTGCTGGAGGTTTGAGTTGAGCGCAGCGAAACAACGTAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTaaaa < 2:1832153/143‑1 (MQ=11) ccTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTaaaa > 2:2450804/1‑150 (MQ=32) cTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTaaaaa > 1:1583083/1‑150 (MQ=32) atcgcgcTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAgc < 1:3836812/147‑1 (MQ=17) cgcTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGccc > 2:1313249/1‑150 (MQ=32) ttttttttGCTTTTTTCTATACTCAAAGATACCAAATTTCAGCTGTTTTTAGTTTTTCCCAGCTAAACATATTAGCGGCTGGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCt < 1:2340754/148‑1 (MQ=2) tcTTTTTTGCTTTCTGCGATACTCAAAGATTCGAACCTGCACCTGGTTTTAGTTGCTCTCAGCGAAACTACGGAGCCGCTCGCGGCTACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCt < 2:2180712/149‑1 (MQ=11) gcTTTCTTGCTCCCTGCTATACTAAAAGCTTCGATCCTGCAGCTTGTTTTAGTTGCTGTCAGATAAACAACGGAGCGGCTCGCGGCGAGGGCCATAAGGGCGTTCGAAGCTTGTAATCCTGCACGACCCACCAATGTAAAAAAGCGCCCt < 2:2327500/150‑1 (MQ=2) cTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTa > 1:1112265/1‑150 (MQ=32) cTTTATTGCTATCTGCGATACTAAAAGTTTCGAACCTGCAGCAGTTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTa < 1:4608042/150‑1 (MQ=255) ttttttGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTaa > 1:2416585/1‑150 (MQ=32) ttttttGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTaa > 1:2081804/1‑150 (MQ=32) tttttGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTaac > 1:2816201/1‑149 (MQ=17) tttGCTCTCTGCGATACTCAAATATTCTAACCTGCTGCAGTTTTTTGTTTCGCGCAGCTAAACAACGGAGCCGCTCGCGGCGACGTCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAgg < 2:3472993/150‑1 (MQ=11) tCAAAGATTCGATCCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCa < 2:4258837/150‑1 (MQ=17) aaGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCGAAAGGCGCTTTTTTGCTATTCAGGc > 2:4367341/1‑150 (MQ=21) ctaTTCGAACCTGAAGCAGGTTTGAGTTGAGCGCAGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCa < 1:3608210/148‑1 (MQ=255) ataTTCGAACCTGCTGCAGGTTTGATTTGAGCGCAGCTAACCAACGGAGCCGCTCGCGGCGACGGCCCGACGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCa < 1:1270945/148‑1 (MQ=11) aGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCa > 2:4024307/1‑150 (MQ=35) aGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCa > 2:4024203/1‑150 (MQ=35) ttCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGTGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACAAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATcc < 1:1802592/150‑1 (MQ=255) atCGAACCTGCAGCAGGATTGAGTTGAGCGCAGTGAACCAAAGGAGCCGCTCGCGGCGACGGACCTTACGGCGAGCGAAGCGAGTCATCCTGCACGACCCACAAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATcc < 1:1802593/149‑1 (MQ=11) tCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCt > 2:3181973/1‑150 (MQ=38) cGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTc < 1:1427622/150‑1 (MQ=39) gAACCTGCAGCCGGTTTGAGTTGAGCGCAGCTAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCa < 1:2726495/150‑1 (MQ=255) gAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCa > 1:916375/1‑150 (MQ=40) acccTGCAGCAGGTTTGAGTTGAGCGCAGCGTAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCaa < 2:1092502/148‑1 (MQ=255) aaCCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCaa > 1:3332964/1‑150 (MQ=40) aCCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAAt > 1:2112897/1‑150 (MQ=255) ccTGCAGCTGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAAtt < 1:1124522/150‑1 (MQ=255) agcagGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACt > 2:4020820/1‑150 (MQ=255) agcagGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACt > 1:1351669/1‑150 (MQ=255) agGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGACGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTg < 1:4222247/150‑1 (MQ=255) agGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTg > 2:1263597/1‑150 (MQ=255) | CAAGGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGACTTTTAATCAATTGGTCGCAGGTTCGAATCCTGCACGACCCACCAATGTAAAAAA‑GCGCCCTAAAGGCGCTTTTTTGCTATCTGCGATACTCAAAGATTCGAACCTGCAGCAGGTTTGAGTTGAGCGCAGCGAAACAACGGAGCCGCTCGCGGCGACGGCCCGAAGGGCGAGCGAAGCGAGTCATCCTGCACGACCCACCAATGTAAAAAAGCGCCCTAAAGGCGCTTTTTTGCTATTCAGGCATCCTCAATTTCACTTTG > CP009273/777029‑777324 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |