BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP009273	1,525,299	A→T	8.7%	pseudogene (457/738 nt)	yncI →	pseudogene

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP009273	1,525,299	0	A	T	8.7%	993.0 / 62.6	309	pseudogene (457/738 nt)	yncI	pseudogene
Reads supporting (aligned to +/- strand): ref base A (154/127); new base T (12/16); total (166/143)
Fisher's exact test for biased strand distribution p-value = 2.40e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 310 total aligned reads displayed.

GTGAAATTATAGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATT  >  CP009273/1525150‑1525447

gTGAAATTATAGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTa                                                                                                                                                      >  2:201275/1‑150 (MQ=255)

  gAAATTATAGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACa                                                                                                                                                    >  1:2154567/1‑150 (MQ=255)

   aaaTTATAGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAg                                                                                                                                                   >  2:1994488/1‑150 (MQ=255)

         taGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTc                                                                                                                                             >  2:1099573/1‑150 (MQ=255)

            cAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCag                                                                                                                                          <  2:87420/150‑1 (MQ=255)

            cAATAGATGGAAAGACCATAAGAGGCTCCTNTGATAAGGGAAAAAGAAAAGGAGCAATCAATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCag                                                                                                                                          >  1:4275541/1‑150 (MQ=255)

             aaTAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCaga                                                                                                                                         >  1:788219/1‑150 (MQ=255)

               tAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTTCAGCCATTCCAGAGt                                                                                                                                       <  1:2325469/150‑1 (MQ=255)

                aGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGtt                                                                                                                                      <  2:3575553/150‑1 (MQ=255)

                aGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGtt                                                                                                                                      >  1:2906664/1‑150 (MQ=255)

                aGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGtt                                                                                                                                      <  2:4487340/150‑1 (MQ=255)

                   tGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCt                                                                                                                                   <  1:2628589/150‑1 (MQ=255)

                            cATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACt                                                                                                                          >  1:2916718/1‑150 (MQ=255)

                             aTAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTg                                                                                                                         >  2:3850646/1‑150 (MQ=255)

                               aaGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTa                                                                                                                       <  2:4441283/150‑1 (MQ=255)

                                   ggCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTa                                                                                                                   >  2:430144/1‑150 (MQ=255)

                                   ggCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTa                                                                                                                   <  1:140220/150‑1 (MQ=255)

                                     cTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTaaa                                                                                                                 >  1:4066480/1‑150 (MQ=255)

                                     cTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTaaa                                                                                                                 >  1:3846832/1‑150 (MQ=255)

                                           tGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGaaaaa                                                                                                           >  2:2989849/1‑150 (MQ=255)

                                               aaGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACTAAAATGGTGTTGTACTGGGTCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTg                                                                                                       <  2:1037497/150‑1 (MQ=255)

                                               aaGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTTCAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTg                                                                                                       <  2:2919936/150‑1 (MQ=255)

                                               aaGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTg                                                                                                       <  2:1348927/150‑1 (MQ=255)

                                               aaGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTg                                                                                                       <  2:400569/150‑1 (MQ=255)

                                                  tgAAAAAGAATTTGATCAATCCATATGGTTAGTGCATTCTCGAACGAATATGGTTTTTTACTGGGGCAGGTGAATTCGTTTTGCAAATGTAATGAGATTACAGCCATTCCAGATTTGATTATCCTACTTTATTTAAAGATAAATTTGATa                                                                                                    <  2:1187943/149‑1 (MQ=255)

                                                   gAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATaa                                                                                                   >  1:2232739/1‑150 (MQ=255)

                                                        agaaaagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCAtt                                                                                              <  1:2092304/150‑1 (MQ=255)

                                                          aaaagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGa                                                                                            <  2:15732/150‑1 (MQ=255)

                                                          aaaagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGa                                                                                            <  2:1968232/150‑1 (MQ=255)

                                                          aaaagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGa                                                                                            <  2:669463/150‑1 (MQ=255)

                                                          aaaagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGa                                                                                            >  1:693812/1‑150 (MQ=255)

                                                           aaagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGAt                                                                                           >  2:2611970/1‑150 (MQ=255)

                                                            aagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATg                                                                                          <  2:729307/150‑1 (MQ=255)

                                                            aagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATg                                                                                          >  2:4494497/1‑150 (MQ=255)

                                                            aagGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAACTTGATAACCATTGATg                                                                                          >  1:3197764/1‑150 (MQ=255)

                                                               gAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAACTTGATAACCATTGATGCTa                                                                                       <  2:3313294/150‑1 (MQ=255)

                                                                aGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTAt                                                                                      >  1:138995/1‑150 (MQ=255)

                                                                 gCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATg                                                                                     <  2:3429368/150‑1 (MQ=255)

                                                                  cAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATgg                                                                                    <  1:3313230/150‑1 (MQ=255)

                                                                  cAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATgg                                                                                    <  2:4574168/150‑1 (MQ=255)

                                                                  cAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATgg                                                                                    >  1:3530460/1‑150 (MQ=255)

                                                                    aTCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGc                                                                                  >  2:2132603/1‑150 (MQ=255)

                                                                    aTCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGc                                                                                  >  2:2046313/1‑150 (MQ=255)

                                                                     tCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCt                                                                                 <  2:1518928/150‑1 (MQ=255)

                                                                      ccATATGGTGATTGCATTCTAGAACTAAAAATTTGTTGTACTGGGGAAGGTGAAAACGGAAGCCAAAAGTAAAGAGATTACAGCCATACCAGAGTTGCTAAACCTACTGTAATTAAAGAAAAATTTGATAACCATTGAAGCTATGTGCTg                                                                                >  2:27492/1‑150 (MQ=255)

                                                                      ccATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTg                                                                                >  2:102388/1‑150 (MQ=255)

                                                                        atatGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTc                                                                              >  2:3800354/1‑150 (MQ=255)

                                                                        atatGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTc                                                                              >  2:2854043/1‑150 (MQ=255)

                                                                        atatGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAACTTGATAACCATTGATGCTATGGGCTGTc                                                                              >  2:599563/1‑150 (MQ=255)

                                                                          atGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAg                                                                            >  2:1027841/1‑150 (MQ=255)

                                                                          atGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAg                                                                            >  1:3306224/1‑150 (MQ=255)

                                                                             gTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGaaa                                                                         >  1:3988579/1‑150 (MQ=255)

                                                                                aGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGat                                                                      <  2:2348328/150‑1 (MQ=255)

                                                                                  tGCATTCTCGAACGAAATTGGTGTTGTACTGGGGCAGGTGAAAACGGAATCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGatat                                                                    <  2:3188794/150‑1 (MQ=255)

                                                                                  tGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGatat                                                                    <  1:3103770/150‑1 (MQ=255)

                                                                                   gCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATc                                                                   <  1:431647/150‑1 (MQ=255)

                                                                                    cATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCg                                                                  <  1:441907/150‑1 (MQ=255)

                                                                                     aTTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGc                                                                 <  1:673815/150‑1 (MQ=255)

                                                                                       tctcGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCtt                                                               >  1:1062855/1‑150 (MQ=255)

                                                                                        ctcGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTc                                                              <  1:3938197/150‑1 (MQ=255)

                                                                                         tcGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCg                                                             <  2:2445717/150‑1 (MQ=255)

                                                                                         tcGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCg                                                             >  1:2172220/1‑150 (MQ=255)

                                                                                          cgaacgaaAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGa                                                            >  2:376027/1‑150 (MQ=255)

                                                                                          cgaacgaaAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGa                                                            >  2:2533997/1‑150 (MQ=255)

                                                                                           gaacgaaAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGaa                                                           >  1:2669826/1‑150 (MQ=255)

                                                                                             acgaaAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGa                                                         <  2:3365079/150‑1 (MQ=255)

                                                                                                aaaaTGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTTCAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCa                                                      <  1:554483/150‑1 (MQ=255)

                                                                                                aaaaTGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTTCAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCa                                                      >  1:3857729/1‑150 (MQ=255)

                                                                                                 aaaTGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCaa                                                     >  1:1597897/1‑150 (MQ=255)

                                                                                                  aaTGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCaaa                                                    >  1:841126/1‑150 (MQ=255)

                                                                                                    tGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCGATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGa                                                  >  2:3252319/1‑150 (MQ=255)

                                                                                                        gttgtACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTTCAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATaaa                                              <  1:1246650/150‑1 (MQ=255)

                                                                                                         ttgtACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATaaaa                                             <  2:3271927/150‑1 (MQ=255)

                                                                                                         ttgtACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATaaaa                                             <  2:4092303/150‑1 (MQ=255)

                                                                                                          tgtACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATaaaaa                                            >  2:461805/1‑150 (MQ=255)

                                                                                                          tgtACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATaaaaa                                            <  2:3932516/150‑1 (MQ=255)

                                                                                                            tACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAg                                          <  2:4328970/150‑1 (MQ=255)

                                                                                                                ggggCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGa                                      <  1:201275/150‑1 (MQ=255)

                                                                                                                 gggCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTTCAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGAt                                     >  1:1684077/1‑150 (MQ=255)

                                                                                                                 gggCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGAt                                     <  2:1885023/150‑1 (MQ=255)

                                                                                                                   gCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTa                                   >  2:1734762/1‑150 (MQ=255)

                                                                                                                     aGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCCTTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTAtc                                 <  2:51103/150‑1 (MQ=255)

                                                                                                                      ggTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTAtct                                >  1:1805228/1‑150 (MQ=255)

                                                                                                                       gTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTAtctt                               <  1:3693267/150‑1 (MQ=255)

                                                                                                                       gTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTAtctt                               <  1:1968292/150‑1 (MQ=255)

                                                                                                                          aaaaCGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTg                            >  2:3016491/1‑150 (MQ=255)

                                                                                                                           aaaCGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTgg                           <  2:3457494/150‑1 (MQ=255)

                                                                                                                             aCGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCa                         >  1:2775819/1‑150 (MQ=255)

                                                                                                                             aCGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCa                         >  1:1847140/1‑150 (MQ=255)

                                                                                                                              cGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAg                        <  1:2584065/150‑1 (MQ=255)

                                                                                                                                       aaaGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCa               >  1:131859/1‑150 (MQ=255)

                                                                                                                                         attAATGAGATTTCAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAAt             >  1:457515/3‑150 (MQ=255)

                                                                                                                                          gTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAACTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATc            >  1:3953034/1‑150 (MQ=255)

                                                                                                                                               gagaTTTCAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAgggg       <  2:3748362/150‑1 (MQ=255)

                                                                                                                                                  aTTTCAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGaaa    >  2:1909958/1‑150 (MQ=255)

                                                                                                                                                  aTTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCTTTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGaaa    <  2:2154614/150‑1 (MQ=255)

                                                                                                                                                  aTTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAATAAAGCAGATTATCTTGTGGCAGTAAAAGGCAATCAGGGGaca    >  2:2864558/1‑148 (MQ=255)

                                                                                                                                                   ttACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAAt   <  1:1528393/150‑1 (MQ=255)

                                                                                                                                                    tACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAAtt  >  2:4226073/1‑150 (MQ=255)

                                                                                                                                                    tACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAAtt  <  1:2946970/150‑1 (MQ=255)

GTGAAATTATAGCAATAGATGGAAAGACCATAAGAGGCTCCTTTGATAAGGGAAAAAGAAAAGGAGCAATCCATATGGTGAGTGCATTCTCGAACGAAAATGGTGTTGTACTGGGGCAGGTGAAAACGGAAGCCAAAAGTAATGAGATTACAGCCATTCCAGAGTTGCTTAACCTACTGTATTTAAAGAAAAATTTGATAACCATTGATGCTATGGGCTGTCAGAAAGATATCGCTTCGAAGATCAAAGATAAAAAAGCAGATTATCTTCTGGCAGTAAAAGGCAATCAGGGGAAATT  >  CP009273/1525150‑1525447

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`