| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,102,786 | C→T | 35.9% | V94I (GTT→ATT) | wzxB ← | putative polisoprenol‑linked O‑antigen transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,102,786 | 0 | C | T | 35.9% | 316.3 / 284.2 | 262 | V94I (GTT→ATT) | wzxB | putative polisoprenol‑linked O‑antigen transporter |
| Reads supporting (aligned to +/- strand): ref base C (88/80); new base T (52/42); total (140/122) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.51e-01 | |||||||||||
Only 100 of 267 total aligned reads displayed.
TTTTTCTTTTCCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATA > CP009273/2102637‑2102935 | tcttttcCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTAtt < 2:1138420/150‑1 (MQ=255) cttttcCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTGATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTAttt > 2:4419605/1‑150 (MQ=255) ttcCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTg > 1:3666423/1‑150 (MQ=255) tcCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGa > 1:1692654/1‑150 (MQ=255) tcCATGAAACAGCCTGATAGGGTATATTAAATTCCCGACTAATTCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGa < 2:2071100/150‑1 (MQ=255) aaCAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATc > 1:661051/1‑150 (MQ=255) aaCAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATc < 2:2045751/150‑1 (MQ=255) aCAGCCTGATAGGGTAGATTAATTTCCCGAATAATGCAGTAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCa < 2:1547731/150‑1 (MQ=255) aGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCAcc > 2:4042176/1‑150 (MQ=255) gCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCg > 1:3318106/1‑150 (MQ=255) aGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGccc > 1:3930707/1‑150 (MQ=255) gATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑a > 1:58789/1‑150 (MQ=255) gATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCAGCGCCC‑a > 2:1189985/1‑150 (MQ=255) aTAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑aa > 1:4122091/1‑150 (MQ=255) tAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑aaa > 1:1726306/1‑150 (MQ=255) tAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑aaa > 1:4381302/1‑150 (MQ=255) aGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑aaaa > 2:4130279/1‑150 (MQ=255) gggTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑aaaaa < 2:1049809/150‑1 (MQ=255) gTAGATTAAATTCCCGACTATTGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAAt < 2:2172442/150‑1 (MQ=255) gTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAAt > 1:816405/1‑150 (MQ=255) tAGATTAAATTCCCGACTATTGCAGTAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATa < 1:1585101/150‑1 (MQ=255) tAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATa < 1:723059/150‑1 (MQ=255) aGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAg > 2:3349453/1‑150 (MQ=255) aGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAg > 2:223559/1‑150 (MQ=255) tAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGt < 2:3604023/150‑1 (MQ=255) aTTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTAc < 2:1396699/150‑1 (MQ=255) ttCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACt > 2:1828718/1‑150 (MQ=255) cccGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACttt > 2:1526006/1‑150 (MQ=255) ctaatAATGAAGTAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTAt < 1:1327862/146‑1 (MQ=255) cGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTAt < 1:2257252/150‑1 (MQ=255) gACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATc > 1:3482732/1‑150 (MQ=255) aCTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCt > 2:3815359/1‑150 (MQ=255) aCTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCt < 2:2992546/150‑1 (MQ=255) cTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCtt < 1:3358884/150‑1 (MQ=255) tAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCttt > 2:967010/1‑150 (MQ=255) aaTGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTa > 2:1460299/1‑150 (MQ=255) aTGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTAc < 1:502845/150‑1 (MQ=255) aTGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTAc < 2:1481932/150‑1 (MQ=255) tGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACt > 1:523564/1‑150 (MQ=255) tGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACt > 2:1655754/1‑150 (MQ=255) gAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATctg < 1:1821846/150‑1 (MQ=255) gAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATctg > 1:4176760/1‑150 (MQ=255) aaCAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATctgc > 2:3464734/1‑150 (MQ=255) aCAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATctgct < 1:1977357/150‑1 (MQ=255) cAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATctgctg < 2:2129041/150‑1 (MQ=255) aaaCGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCtgctgc > 1:1905135/1‑150 (MQ=255) aaCGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTgctgct > 1:3905385/1‑150 (MQ=255) aaCGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTgctgct < 2:3886345/150‑1 (MQ=255) ccATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGc > 1:1055831/1‑150 (MQ=255) ccATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGc < 1:2086839/150‑1 (MQ=255) ccATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGc > 1:1055656/1‑150 (MQ=255) cATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCa < 1:3588807/150‑1 (MQ=255) tataATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAAt < 2:1903249/150‑1 (MQ=255) tataATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAAt < 2:4232004/150‑1 (MQ=255) ataATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATa > 1:963855/1‑150 (MQ=255) taATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCCAAAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATa < 1:4359083/150‑1 (MQ=255) aaTTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATAct > 2:2571221/1‑150 (MQ=255) tACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTg < 1:3239068/150‑1 (MQ=255) gCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGtt < 2:3069087/150‑1 (MQ=255) cATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTg < 2:3195819/150‑1 (MQ=255) cTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCtgt > 1:1493947/1‑150 (MQ=255) tGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTga > 1:2695711/1‑150 (MQ=255) gTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTgag < 2:4525928/150‑1 (MQ=255) gTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTgag > 2:225895/1‑150 (MQ=255) gTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTgag > 2:225917/1‑150 (MQ=255) agatTCAGGAACCAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGAtt < 2:2379771/148‑1 (MQ=255) tatTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTg < 1:783333/150‑1 (MQ=255) tCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGaaa > 1:1635571/1‑150 (MQ=255) gAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGACACCat > 2:2751213/1‑150 (MQ=255) aaCAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCata < 2:4261596/150‑1 (MQ=255) aagcaagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTc < 2:1386553/150‑1 (MQ=255) caagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTcaac < 1:295480/150‑1 (MQ=255) caagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTcaac > 2:841495/1‑150 (MQ=255) aagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTcaaca > 2:2098820/1‑150 (MQ=255) aagGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTcaaca < 1:4508695/150‑1 (MQ=255) ggTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCaacaaa < 2:1035515/150‑1 (MQ=255) tCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCaacaaaca > 1:3775310/1‑150 (MQ=255) tCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCaacaaaca > 2:1788751/1‑150 (MQ=255) cGACGTTAAGAAAATCAATGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTAt < 1:4251627/150‑1 (MQ=255) cGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTAt > 1:3755001/1‑150 (MQ=255) gACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATc > 1:2454491/1‑150 (MQ=255) aGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCAtatata < 2:3318106/150‑1 (MQ=255) gAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAg > 1:2830919/1‑150 (MQ=255) cAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGt < 1:273387/150‑1 (MQ=255) cAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGt < 1:2533686/150‑1 (MQ=255) aTGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCg < 2:2325977/150‑1 (MQ=255) aTGTAATGACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCg < 2:3510581/150‑1 (MQ=255) aTGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCg < 2:2577202/150‑1 (MQ=255) tAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCtt > 2:1076963/1‑150 (MQ=255) aaTGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTg < 1:2930923/150‑1 (MQ=255) aTGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTgg < 2:2415957/150‑1 (MQ=255) tGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGc < 2:1864056/150‑1 (MQ=255) tGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGc > 1:3475694/1‑150 (MQ=255) gACGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAACCATTATCATATATAGCATAGTCGCTTGGCa < 2:297452/150‑1 (MQ=255) cGATAAGAATTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaaa > 1:3146218/1‑150 (MQ=255) cGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaaa > 1:4597645/1‑150 (MQ=255) aTAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaaaaa > 1:2369985/1‑150 (MQ=255) aTAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCaaaaa > 1:1518226/1‑150 (MQ=255) aaCTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCACTACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGaa > 2:532011/1‑150 (MQ=255) cTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAata < 1:1742727/150‑1 (MQ=255) | TTTTTCTTTTCCCTGAAACAGCCAGATAGGGTAGATTAAATTCCCGACTAATGCAGGAACAAACGACCATATAATTACGGCATGCTTGTTATATTCAGGAACAAGCAAGGTCATCGACGTTAAGAAAATCAATGTAATGACGATAAGAACTATTTTTGAAAATATCACCGCCC‑AAAAAATAGACGTTACTTTATCTTTACTATCTGCTGCTTTGGCAATACTCTGAGTTGCTGTGAGATTGAAACCATATTCAACAAACATTATCATATATAGCATAGTCGCTTGGCAAAAACCGAATA > CP009273/2102637‑2102935 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |