| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 161,068 | A→C | 23.5% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 161,068 | 0 | A | C | 23.5% | 124.1 / 20.1 | 117 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
| Reads supporting (aligned to +/- strand): ref base A (19/69); new base C (7/22); total (26/91) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.99e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 118 total aligned reads displayed.
GTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160921‑161217 | gTGCGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCCCCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc < 2:850459/150‑1 (MQ=255)gTGAGGTGCAAAAAGAGATGAACGGGCGTTATCCCACACAGGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATc < 2:4631767/150‑1 (MQ=255) gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAg > 2:1158257/1‑150 (MQ=255) gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAg > 2:2520510/1‑150 (MQ=255) ggTTCAAAAAGTTATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACGAAAAAGTT‑TTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGTGAGGGCCGGGGTGAGGGCATCAgcg < 2:1444744/150‑1 (MQ=38) gCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcgc > 2:3552684/1‑150 (MQ=255) gCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAgcgcgc > 2:3552490/1‑150 (MQ=255) aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACg > 1:2504644/1‑150 (MQ=255) aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGt > 1:1370075/1‑150 (MQ=255) atataTGAACGGGCGTTATCCCAAACTTGTCTGGCCGGACGACCCGGAAAATACGGCACCGACGCGACGGACGAAAAAGTA‑TTCTTATGTTTGTTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTtc < 2:3973678/146‑1 (MQ=37) agagATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGtgc > 2:3282262/1‑148 (MQ=255) taTGAATGGGCGTTATCCCAAAATTGTGTGGCGGGCCGACCCGGAAAATACTGCACCGACGCGACGGACTAAAATTTA‑TTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTtcacc < 2:2587458/149‑1 (MQ=25) aaaGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTggaccccca > 2:2830759/1‑150 (MQ=255) ggCTTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGGACTAAAAATTA‑TTCTTAAGGTTTGTTTTCTCCCTCGCCCTGGGGTTGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTcaccctcaccct < 2:471079/150‑1 (MQ=38) gCGTTATCCCAAACATGTCTGGCCGGACCACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGTGGGCCTCAGCGCGCACGTTCACCCTCACCCTa < 2:1079391/150‑1 (MQ=255) gTTATCCCAAACATGTTTGGCGGTACGACCCGTAAAATCCTGCACCGCCGCTCGGGACTAAAATTTT‑TGCTTATGGTTGTTTTTCTCCCTCTCCCTGTGGTTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc < 2:473193/150‑1 (MQ=19) gTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCCGCGCGCACGTGGGCCCCCACCCAAAc > 1:2561945/1‑150 (MQ=38) gTTATCCCAAACATGTCTGGCCGGACGACCCGGAAAATACTGCACCGACGCGACGTACTAAAAATTA‑TTCGTATGTTTGTTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc < 2:4404315/150‑1 (MQ=38) gTTAACCCAAACTTTACTGGCGGCACGCCCCGCAAATTACTGCACGGAGGGGA‑GGCAGTAAAATTATTTCTTACGGTTGTTTTTCACCCTCTCCCTGTGGGATTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAAc < 2:473061/150‑1 (MQ=255) ttATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGACCCGCCCCCAAAcc > 1:3920737/1‑150 (MQ=38) aaaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCAGCAGCGCGCACGTGGCCCCGCCCCCAAACCCACAccc > 1:3289158/1‑150 (MQ=37) aaCATGTCTGGCCGTACGACCCGGCAAATACTTCACCCACGCGACGGACTAAAAAGTA‑TTCTTAAGTTTGTTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCt < 2:1488630/150‑1 (MQ=38) aaCATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGAACCGCACCCAAACCCACAcccc > 2:2424539/1‑149 (MQ=37) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCACACCCAAACCCACACCCACaacg > 2:612980/1‑148 (MQ=38) gTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCCCCCACACCCAAAACCACACCCACAAgg > 2:3751019/1‑150 (MQ=37) tCTGGCCGTACGACCCGGCAATTACTGCACCGACGCGACGGACGAAAAAGTA‑GTCGTAAGGTTGGTTTTCTCCCACTCCCTGTGGTAGAGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAggg < 2:1519331/150‑1 (MQ=255) tCTGGCCGGACGACCCGGCAAATACGGCACCGACGCGACGGACGAAAAAGTA‑TCCGTAAGGTTGGTTTTCCCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAggg < 2:1519289/150‑1 (MQ=255) tCTGGCCGGACGACCCGCCAATTCCTGCACCCACGGTACGGACGAAAAAGTT‑TTCGTATGGTTGGTTTTCTCCCTCACCGTGTGGGAGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAggg < 1:1148072/150‑1 (MQ=255) cgggCCGGACGACCCGGAAAATCCTGCACCGACGCGACGTACTAAAAAGTT‑TTCGTAAGGTTGGTTTTCCCCCTCTCCCTGTGGGTTCGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGga < 1:2188124/148‑1 (MQ=255) tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCCGCGCGCACGTTGACCCGCCCCCAAAACCCCAACCAAAAGGgag > 1:4214284/1‑150 (MQ=37) tGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCGCACCCGAACCCACAACCGCAAgggcg > 1:4214302/1‑148 (MQ=37) ggCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCGGTGGGAGAGGGCCTGGGTGAGGGCATCAGCGCGCACGTTCGCCCACAACCAAACCCACACCCACaacgtcag > 2:3638127/1‑144 (MQ=37) gccggccgCCCCGGCAAATACTGCCCCGACGCGCGGGACTAAAATTTA‑TTCTTATGGTTGTTTTTCACCCCCTCCCGGGGGGTGTGGGGCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGagag < 1:705830/150‑1 (MQ=255) ccGGCCGCCCCGGCAAATCCTGCCCCGACGCGACGGACGAAAAATTA‑TTCGTACGGTTGGTTTTCTCCCTCTCCCTGTGGGATAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAgg < 2:2061323/150‑1 (MQ=38) cgccccGGAAAATACTGCCCCGCCGCCACGGCCCAAAAATTA‑TTCTAAAGGTTGGTTTACGCCCCCTCCCTGTGGGAGAGGGCCGGGGGGCGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 2:72752/147‑1 (MQ=255) cgacCCGGAAAATACGGCACCGACGCGACGGACGAAAAATTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGCGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGAcc < 2:220236/150‑1 (MQ=38) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCTACTCCCTCAAGGGAGAGGGGACCg > 1:143209/1‑150 (MQ=255) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCCGCGCGCACGTGGGCCCACCCCCCCACCCCCACCCACCAGGGGGCGGGGGCCg > 1:2907892/1‑150 (MQ=25) gacCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGGCCCGCCCCCCAACACACAACCACAAGGGCGTGGGGGCCg > 1:1307791/1‑150 (MQ=25) ccccGGAAAATCCGGCACCGACGCGACGGACGAAAAAGTA‑TTCGTACGGTTGTTTTTCCCCCTCTCCCTGTGGGAGCGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGa < 2:1830063/149‑1 (MQ=255) acCCGGCAAACACGGCACCGCCGCGCCGGACGAAAAATTA‑TTCGAACGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGa < 2:3923802/150‑1 (MQ=37) ccGGCAAATACTGCCCCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATc < 2:1036636/150‑1 (MQ=255) ggCAAATACTGCACCGACGCGACGGACTAAAAAGTA‑TTCGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGATAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGa < 2:3018745/150‑1 (MQ=255) cAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGGCCCCGCCCCCCAACCCACACCCGCCACGGAGAGGGGGCCGCTCGAGc > 2:508232/1‑150 (MQ=25) aaTCCTGCACCGACGCGCCGGACTAAAACTTA‑TTCGTACGGTTGTTTTACCCCCTCGCCCTGGGGGTGTGGGCGGGGGTGTGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcac < 1:3775166/150‑1 (MQ=255) acacggCACCGACGCGAGGTACGAAAAAGTA‑TTCTTACGGTTGGTTTTCTCCCTCTCCCGGGGGGTGAGGGCCGGGGGGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcaca < 2:667049/145‑1 (MQ=255) aTACTTCCCTGACGCGACGGACTAAAAAGTT‑TTCGTAAGGTTGTTTTTGTCCCTCTCCCTGTGGTAGGGGGCCGGGTTTTGGGACTCCGCGCGCACGTTCTCCCTCACCCTAACCCTCTCCCTCAAGGGATAGGGGTACGATCGAGcaca < 2:667020/150‑1 (MQ=255) aTACTGCCCCCACGCCACGGACCAAAAAGTA‑TTCGTAAGGTTGTTTTTCTCCCTAGCCCAGTGGGATAGGCCCGGGGTTAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcaca < 2:2549459/150‑1 (MQ=255) aTACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcaca < 2:2601129/150‑1 (MQ=255) tGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGGGCCCCCGCACCCAAACCCAAACCCACAAGGGGGAGGGGGCCGGTCGAGgacacaag > 2:884299/1‑146 (MQ=25) gccccGAGGCTAGGGACTAAAATTTT‑TTCTTATGTTTGGTTTTCGCCCCCCCCTTGGGGTATGGGGCGGGGTTGTGGGCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAttt < 1:4131339/147‑1 (MQ=255) gccccGACGCGCCGGACTAAAATTTT‑TTGGTATGGTTGGTTTTCTCCCCCCCCGGGGGGGTGCGGGCGGGGGTGCGGCCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAttt < 1:4131457/147‑1 (MQ=255) ccccgccgCGACGGCCGAAAAATTA‑TGGTTATGGTTGGTTTTCGCCCACTCCCTGTGGGTGTGGGCCGGGGTGCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtttt < 1:956237/148‑1 (MQ=255) gacgcgcggGACTAAAATGTT‑TTCGTATGGTTGTTTTTCCCCCTCTCCCTGGGGGTGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgaga < 1:2579948/150‑1 (MQ=255) gcgacgGACTAAAATGTT‑TTCGTATGGTTGGTTTTCGCCCCCGCCGTGTGGGTGCGGGCGGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGat < 1:2799960/150‑1 (MQ=255) gacggactAAAAAGAT‑TTCGTAGGTTTGGTTTTCTCCATCTCCCTGTGGGATCGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGatat < 1:4088766/150‑1 (MQ=255) ccggccgAAAACTTA‑TAGGTACGTTTGTTTTCCTCCCCCTCCGTGTGGTTGTGGGCGGGGTTTCGGGCATCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtc < 2:774717/149‑1 (MQ=255) cgAAATGGTA‑TTCGTTCGGGTTGTGTTTTCCGTGGCCCTGTGGGATTGGGCGGGGGTGAGGGCCTCAGCGCGCATGTTCACCCTCCCCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGTTCGAGCACAAATTTTGAGAGATAtcttctt < 1:576112/150‑1 (MQ=255) gAAAAAGTA‑TTCGTATGGTTGTTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttc < 2:1476918/150‑1 (MQ=255) aaaaaGTA‑TTCGTAAGGTTGGTTTTCCCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttct < 2:1677868/150‑1 (MQ=255) aaatttA‑TTCGTATGGTTGGTTTTCTCCCTCTCCCGGTGGGAGTGGGCGGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTg < 1:2269479/145‑1 (MQ=255) gTA‑TTCGTACGGTTGGTTTTCTCCCTCTCCCTGGGGGAGCGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:3063444/150‑1 (MQ=255) gTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:668001/150‑1 (MQ=255) gTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:1020305/150‑1 (MQ=255) gTA‑TTCGTAAGGTTGGTTTACTCCCACTCCCTGTGGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 2:668020/150‑1 (MQ=255) gttttCTTATGGTTGTTTTTCTCCCTCTCCCTGGGGGATCGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCtt < 1:3063446/147‑1 (MQ=38) acgtttgtttTTCCCCCACCCCCTGGGGTTTTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACaga < 2:24540/146‑1 (MQ=255) tttgtttTTCCCCCTCACCTTGTGGTTGTGGGCGGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACagaaga < 1:259336/149‑1 (MQ=255) gttTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTGCACCCCCACCCAAAACCACTCCCACCACGGGGAGGGGGCCGATCGGGCACAAATTTTGTGCTTTATATTGTTAAGTGTTGTAAAAGAATAACac > 2:2964286/1‑149 (MQ=12) ttCCCCCTCTCCGTGTGGGTGTGGGCGGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATTTTCTTCTGTCTTGTAACAGAAGAACAGaaa < 1:4286739/150‑1 (MQ=255) ccctccccctGTGGTTTTGGGCGGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCg < 2:1169401/150‑1 (MQ=255) ctctccctGGGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCggg < 2:3406521/150‑1 (MQ=255) tctccctGTGGTAGAGGGCCGGGGTGTGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGc < 1:287887/150‑1 (MQ=255) tccccgtgtgGGAGTGGGCGGGGGTGCGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGc < 1:288003/144‑1 (MQ=255) ccccgtgtgGGAGAGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCt < 1:4072410/145‑1 (MQ=255) tccctGGGGGAGTGGGCCGGGGTGAGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtt < 1:1064196/150‑1 (MQ=255) ccctGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGAGATCTTCTTCTGTCTTGTAACAGAAGAACCGAAAATCGGGCttt < 2:2918812/150‑1 (MQ=255) ccctGGGGGAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACACGAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 2:2918802/150‑1 (MQ=255) ccggtgGGAGCGGGCGGGGTTGAGGCCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtttt < 2:1932658/147‑1 (MQ=255) ctGTGGGTGTGGGCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTg < 1:3402903/150‑1 (MQ=255) cggggggAGAGGGCCGGGGTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTg < 2:3735575/146‑1 (MQ=255) gtgGGAGTGGGCGGGGGTGTGGCCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcg < 2:794348/150‑1 (MQ=255) tgGTAGTGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 2:4341993/150‑1 (MQ=255) tgGGAGAGGGCCGGGGGGCGGGCCTCAGCGCGCACCTTCACCCTCACCCTACCCCTCCCCCTCAAGGGAGAGGGCACCGATCGAGCACAAATTTTGAGAGATATCTTCGTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTgcgc < 2:4342524/150‑1 (MQ=255) gagaGGGCCGGGGTGAGGGCATCAGCGCGCACGGTCACCCTCACCCGAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAACTTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAACCTCGGGCTTTTGCGCCTg < 2:1113948/150‑1 (MQ=255) gggCCGGGGTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:2131095/150‑1 (MQ=255) gggCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAata < 2:3659366/150‑1 (MQ=255) gCCGGTGTGAGTGCATCAGCGCGCACGTTCACCCTCTCACTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt < 1:4160974/150‑1 (MQ=255) gCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATAtt < 2:4088711/150‑1 (MQ=255) gggggTGCGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGc < 1:2132113/149‑1 (MQ=255) gggTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCgg < 1:3564089/150‑1 (MQ=255) gggTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACATAAAATCGGGCTTTTGCGCCTGAATATTGCgg < 2:1064192/150‑1 (MQ=255) ggTGTGGGCATCAGCGCGCACGTTCACCATCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGTTATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGTGga < 2:3648713/150‑1 (MQ=255) gTGCGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGgag < 2:4503499/150‑1 (MQ=255) tgtgggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGgaga < 2:1147464/147‑1 (MQ=255) gcgggCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaa < 2:2807302/148‑1 (MQ=255) aGGGCCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaa < 1:4101321/150‑1 (MQ=255) gggCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 1:1236660/150‑1 (MQ=255) gggCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 1:3112617/150‑1 (MQ=255) aTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAATTTGAGAGATATCTTCTTCGGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCa < 2:2510604/150‑1 (MQ=255) | GTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAATACTGCACCGACGCGACGGACGAAAAAGTA‑TTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGGCATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAAAGCA > CP009273/160921‑161217 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |