| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,291,194 | C→A | 40.4% | C182F (TGC→TTC) | napC ← | quinol dehydrogenase, electron source for NapAB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,291,194 | 0 | C | A | 40.4% | 292.4 / 271.6 | 240 | C182F (TGC→TTC) | napC | quinol dehydrogenase, electron source for NapAB |
| Reads supporting (aligned to +/- strand): ref base C (97/46); new base A (55/41); total (152/88) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.02e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.87e-01 | |||||||||||
Only 100 of 260 total aligned reads displayed.
AGCGTAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATGCGCCGCCACTCATTCT > CP009273/2291047‑2291341 | aGCGTAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGcaa < 2:1393897/150‑1 (MQ=255)aGCGTAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGaaa > 2:617558/1‑150 (MQ=255) gCGTAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGaaat < 1:2560587/150‑1 (MQ=255) cGTAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGaaatc < 2:687077/150‑1 (MQ=255) gTAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCAGATAAAAACCTGGCTCTACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGaaatca > 1:2048202/1‑150 (MQ=255) tAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGcaatcaa > 2:2185007/1‑150 (MQ=255) tAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGaaatcaa > 2:183175/1‑150 (MQ=255) tAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGaaatcaa < 2:461066/150‑1 (MQ=255) aaaTGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGaaatcaat < 1:2484560/150‑1 (MQ=255) aaTGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATa > 1:2885013/1‑150 (MQ=255) aaTGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATa > 1:2884922/1‑150 (MQ=255) aCAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAgg > 1:1342673/1‑150 (MQ=255) ccACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGc > 1:809911/1‑150 (MQ=255) ccACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGc > 1:20924/1‑150 (MQ=255) ccACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGc > 1:1985762/1‑150 (MQ=255) aCTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGccc > 1:3698851/1‑150 (MQ=255) cTAAATAAGGTTCGTTCATCCCGCTCACATAGTAACTCTCTGGCTTCATGCATACCCACGCAATAACCCTGTTAAAAACCTGGATCGACTTCACGCATATCGGGCAGCTTGTGCGCGATCCCTTTCTGGTAATCAATACAGGTTTgaaca < 2:2128268/150‑5 (MQ=255) cTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCa > 2:358489/1‑150 (MQ=255) cTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCa < 2:2235425/150‑1 (MQ=255) cTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCa < 1:426502/150‑1 (MQ=255) aaaTAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATc > 1:541734/1‑150 (MQ=255) aaaTAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATc > 2:3176644/1‑150 (MQ=255) aaTAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCt > 1:2273214/1‑150 (MQ=255) aaGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTc > 1:756642/1‑150 (MQ=255) aGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCa > 1:3901225/1‑150 (MQ=255) gttcATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCt < 2:1523388/150‑1 (MQ=255) ttcATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTg < 2:4052596/150‑1 (MQ=255) aTCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTc < 1:3238553/150‑1 (MQ=255) tCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCa < 1:2680945/150‑1 (MQ=255) ccGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATg < 1:3199538/150‑1 (MQ=255) cGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGc < 2:3243540/150‑1 (MQ=255) gCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCa > 1:2138606/1‑150 (MQ=255) cacaAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCt > 1:1780527/1‑150 (MQ=255) cacaAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCTCCTGGTCATGCATCt < 2:1186994/150‑1 (MQ=255) cacaAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCt < 2:2771218/150‑1 (MQ=255) cacaAAGTAACTCTCTGGCTTCAAGCAGACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCt < 2:3332346/150‑1 (MQ=255) acaAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCtt < 2:177863/150‑1 (MQ=255) aaaGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTcg > 2:2476402/1‑150 (MQ=255) gTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCgg > 1:4502330/1‑150 (MQ=255) tAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGc > 2:167922/1‑150 (MQ=255) tAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGc > 2:2968933/1‑150 (MQ=255) tctctGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAAcc < 1:4107602/150‑1 (MQ=255) tctctGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAAcc > 1:1295653/1‑150 (MQ=255) ctctGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCg > 2:4277156/1‑150 (MQ=255) ctctGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCg > 2:4277181/1‑150 (MQ=255) ctctGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGAGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCTCCTGGTCATGCATCTTCGCGGCACCCg > 2:222144/1‑150 (MQ=255) tctGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGa > 2:1985122/1‑150 (MQ=255) ttCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTg > 2:4094132/1‑150 (MQ=255) ttCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTg > 2:3483021/1‑150 (MQ=255) tCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTgg > 2:3244124/1‑150 (MQ=255) cAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTggg < 2:554384/150‑1 (MQ=255) aaGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGc > 1:4576292/1‑150 (MQ=255) aCCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGt > 1:3609988/1‑150 (MQ=255) gCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCat < 1:1206608/150‑1 (MQ=255) cAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCata > 2:3409098/1‑150 (MQ=255) aTAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCAtata > 2:3066948/1‑150 (MQ=255) aaCCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACt > 2:2569713/1‑150 (MQ=255) aaCCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACt < 1:1993673/150‑1 (MQ=255) aCCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTc > 1:3472886/1‑150 (MQ=255) cccTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCg > 2:4235255/1‑150 (MQ=255) cTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGaa > 1:2962347/1‑150 (MQ=255) ttAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGtt < 2:4203369/150‑1 (MQ=255) tAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATAATCGAAGTtg > 1:3882957/1‑150 (MQ=255) aaaCCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGa < 1:3851684/150‑1 (MQ=255) aaCCTGGCTCGACTTCACGCATATCGGGCAGCTAGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGAc < 2:3840778/150‑1 (MQ=255) aCCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACa > 1:2456089/1‑150 (MQ=255) ccTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAg > 2:823191/1‑150 (MQ=255) ccTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAg < 1:2693728/150‑1 (MQ=255) tGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCAGGTCATGCATCTTAGCGGCAACCGATTTCTGGGCGGTTGTATCCATAAACTCGAAGTTGTGACAGtt > 1:1317448/1‑150 (MQ=255) ggCTCGACTTCACGCATATCGTGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTa < 2:442565/150‑1 (MQ=255) ggCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTa < 2:3745849/150‑1 (MQ=255) ggCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTa < 2:577899/150‑1 (MQ=255) cTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACg > 1:2738478/1‑150 (MQ=255) cGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGc > 1:2819980/1‑150 (MQ=255) cGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGc > 2:350730/1‑150 (MQ=255) gACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCa > 1:167589/1‑150 (MQ=255) gACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCa > 1:4048657/1‑150 (MQ=255) ttCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTc < 1:1415437/150‑1 (MQ=255) cACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCt < 1:3121065/150‑1 (MQ=255) cACGCATATCGGGCAGCTTGTGCGCTATCCCTTNATGGAAATCNATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCt < 1:1898178/150‑1 (MQ=255) cGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGc < 1:3395624/150‑1 (MQ=255) gCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCg < 1:332972/150‑1 (MQ=255) cATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGa < 1:2311216/150‑1 (MQ=255) tatCGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGt < 2:2834083/150‑1 (MQ=255) tCGGGCAGCTTGTGCGCTATCACTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTa < 2:2119121/150‑1 (MQ=255) cGGGCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTAt > 1:1648835/1‑150 (MQ=255) gCAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGt < 1:4336781/150‑1 (MQ=255) cAGCTTGTGCGCTATCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTc > 1:825027/1‑150 (MQ=255) gCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCt < 2:1278166/150‑1 (MQ=255) gtgCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCAt > 1:3507543/1‑150 (MQ=255) tgCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATg < 2:3017253/150‑1 (MQ=255) gcgcTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATgc > 1:4563422/1‑150 (MQ=255) gcgcTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATgc > 1:983637/1‑150 (MQ=255) cgcTATCCCTTTCTGGCACTCCATACAGGTTGGCCCATCTTTCACCGCCTGGTCATGCATCGTCGCGGCAACCGATTTCTGGGCGGTTGGATCCATATACTCGAAGTTGTGACTGTTACGGCACGCCTGCGTGTTATTGTCCTTCATgcg < 2:3345359/150‑1 (MQ=255) cTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATGcgcc > 2:2694495/1‑150 (MQ=255) aTCCCTTTATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATGcgccgc > 1:1016810/1‑150 (MQ=255) ccTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATGCGCCGCCAc > 2:2696493/1‑150 (MQ=255) ttATGGAAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATGCGCCGCCACTCa > 1:809620/1‑150 (MQ=255) aTGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATGCGCCGCCACTCAtt > 1:694310/1‑150 (MQ=255) tGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATGCGCCGCCACTCATTc > 1:2369788/1‑150 (MQ=255) | AGCGTAAATGACAAGCCACTAAATAAGGTTCGTTCATCCCGCTCACAAAGTAACTCTCTGGCTTCAAGCATACCCACGCAATAACCCTGTTAAAAACCTGGCTCGACTTCACGCATATCGGGCAGCTTGTGCGCTATCCCTTTATGGCAATCAATACAGGTTTGCCCATCTTTCACCGCCTGGTCATGCATCTTCGCGGCAACCGATTTCTGGGCGGTTGTATCCATATACTCGAAGTTGTGACAGTTACGGCACTCCTGCGAGTTATTGTCCTTCATGCGCCGCCACTCATTCT > CP009273/2291047‑2291341 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |