| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,552,999 | A→T | 10.1% | A261A (GCA→GCT) | intZ → | CPZ‑55 prophage; putative phage integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,552,999 | 0 | A | T | 10.1% | 856.5 / 68.2 | 268 | A261A (GCA→GCT) | intZ | CPZ‑55 prophage; putative phage integrase |
| Reads supporting (aligned to +/- strand): ref base A (132/109); new base T (11/16); total (143/125) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.22e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 | |||||||||||
Only 100 of 278 total aligned reads displayed.
CGATTAGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGATTCATGGATAAACCCTT > CP009273/2552851‑2553148 | gATTAGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGcaac > 1:1676480/1‑150 (MQ=255) tAGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAAt > 2:1007576/1‑150 (MQ=255) aGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATc < 2:1379530/150‑1 (MQ=255) gTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATca > 1:4239882/1‑150 (MQ=255) aaaTTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACAt > 2:3516920/1‑150 (MQ=255) aaaTTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACAt > 2:692907/1‑150 (MQ=255) cGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCg < 2:2264803/150‑1 (MQ=255) gCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTACAGATTCAGACGGCAATACGTTTGCTTATATTAACGTCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCt < 1:3148570/150‑1 (MQ=255) ccTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTg < 1:1151611/150‑1 (MQ=255) ccTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTg < 1:2532271/150‑1 (MQ=255) tCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAg < 1:3282980/150‑1 (MQ=255) tCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAg < 1:1734516/150‑1 (MQ=255) tACAAAGCCCTTGAGAGGGCCAGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTc > 2:4457518/1‑150 (MQ=255) cAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCAt < 2:1918171/150‑1 (MQ=255) aaaGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATg > 1:507328/1‑150 (MQ=255) aaaGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATg > 2:2797431/1‑150 (MQ=255) aGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATGaa < 2:3662383/150‑1 (MQ=255) aGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGaa < 2:3578503/150‑1 (MQ=255) gCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAg < 1:880480/150‑1 (MQ=255) ttGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGccc > 1:661604/1‑150 (MQ=255) agagGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCccgcc > 1:1326352/1‑150 (MQ=255) agagGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCccgcc > 2:1670680/1‑150 (MQ=255) ggCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGccgccc > 1:1011199/1‑150 (MQ=255) gCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGccgcccg < 1:2186570/150‑1 (MQ=255) gCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGccgcccg < 2:551580/150‑1 (MQ=255) cGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCa > 2:4337337/1‑150 (MQ=255) cGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGAAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCa > 2:1573639/1‑150 (MQ=255) gggAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCAt < 2:2176678/150‑1 (MQ=255) gggAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCAt < 2:3924250/150‑1 (MQ=255) ggAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCAtg > 2:3005176/1‑150 (MQ=255) ggAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCAtg > 2:3375464/1‑150 (MQ=255) aGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCAtgtg > 1:2429211/1‑150 (MQ=255) gTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTc > 2:233301/1‑150 (MQ=255) gTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACACTCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTc < 2:881560/150‑1 (MQ=255) ccAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTccc < 1:307820/150‑1 (MQ=255) ccAGATTCAGACGGCAATACGTGTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTccc < 1:2083041/150‑1 (MQ=255) ttCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTAt < 2:4092320/150‑1 (MQ=255) ttCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTAt < 2:806337/150‑1 (MQ=255) ttCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAAGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTAt > 1:3388553/1‑150 (MQ=255) gACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACg < 1:4604973/150‑1 (MQ=255) cGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGc > 1:3640399/1‑150 (MQ=255) ggCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCa > 2:4491454/1‑150 (MQ=255) ggCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCa < 1:3705646/150‑1 (MQ=255) cAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAgg > 2:3063696/1‑150 (MQ=255) tACGTTTGCTTATATTAACGTCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCgg < 2:2062410/150‑1 (MQ=255) tACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCgg > 2:716263/1‑150 (MQ=255) aCGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGt > 1:2792824/1‑150 (MQ=255) cGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTc > 2:234413/1‑150 (MQ=255) cGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTc > 1:1046517/1‑150 (MQ=255) cGTTTGCTTATATTAACGGCAGTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTc > 1:4544656/1‑150 (MQ=255) gTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCg < 1:1756452/150‑1 (MQ=255) tttGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGa < 1:1896483/150‑1 (MQ=255) ttATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGACTGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTAt > 2:2879202/1‑150 (MQ=255) tataTTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTAtt < 1:3348749/150‑1 (MQ=255) tataTTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTAtt > 2:3255529/1‑150 (MQ=255) atatTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACACTCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTg < 2:1203956/150‑1 (MQ=255) aCGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGAc > 1:4451536/1‑150 (MQ=255) cGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGAcc > 2:934599/1‑150 (MQ=255) cGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGAcc < 2:4300118/150‑1 (MQ=255) ggCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCa > 1:4166790/1‑150 (MQ=255) ggCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCa > 1:2374571/1‑150 (MQ=255) cATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGt > 2:2615746/1‑150 (MQ=255) tAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTca > 2:90663/1‑150 (MQ=255) tAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTca < 1:1447636/150‑1 (MQ=255) aaGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTcac > 2:3314157/1‑150 (MQ=255) aaGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTcac > 1:1006661/1‑150 (MQ=255) ggACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCacac > 1:4413649/1‑150 (MQ=255) gACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACg > 2:3655399/1‑150 (MQ=255) gACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACg > 1:2640048/1‑150 (MQ=255) aCCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGc > 2:1695786/1‑150 (MQ=255) aCCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGc > 2:1976929/1‑150 (MQ=255) cGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAg > 1:1468397/1‑150 (MQ=255) cGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAg > 2:2923235/1‑150 (MQ=255) cGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAg > 2:2175310/1‑150 (MQ=255) aaCTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCGGGACCAGTTCACACGCAGCGGAt < 1:1118349/150‑1 (MQ=255) tGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACa < 2:1802640/150‑1 (MQ=255) gCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAg > 2:2665675/1‑150 (MQ=255) tgtgCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCtt > 1:658252/1‑150 (MQ=255) gtgCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCttt < 1:3808217/150‑1 (MQ=255) gtgCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCttt < 2:2421739/150‑1 (MQ=255) tgCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTc < 2:1452260/150‑1 (MQ=255) gTTGGGAATGGATAAACCTGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCt < 1:1337694/150‑1 (MQ=255) ttGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCtt < 2:2752562/150‑1 (MQ=255) ttGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCtt < 1:954358/150‑1 (MQ=255) ggAATGGATAAACCTGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTcc < 2:3724135/150‑1 (MQ=255) ggAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTcc < 2:4215096/150‑1 (MQ=255) tGGATAAACCTGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGc < 2:3885822/150‑1 (MQ=255) tGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGc < 2:4005184/150‑1 (MQ=255) ggATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGcc < 1:3853855/150‑1 (MQ=255) gATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCg < 1:3516920/150‑1 (MQ=255) tAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGAt < 1:4307172/150‑1 (MQ=255) tAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGAt > 1:233063/1‑150 (MQ=255) aaaCCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGAtt < 1:4133816/150‑1 (MQ=255) aaaCCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGAtt < 1:1382601/150‑1 (MQ=255) ccTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGATTCAt > 1:1982103/1‑150 (MQ=255) cTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGATTCATg < 2:1676632/150‑1 (MQ=255) tGGAGGACGCTACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGATTCATgg > 1:1101243/1‑150 (MQ=255) aggaCGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGATTCATGGATa > 1:1548193/1‑150 (MQ=255) ggaCGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGATTCATGGATaa < 2:4440446/150‑1 (MQ=255) caacaaTCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGATTCATGGATAAACCCt > 1:2850838/1‑150 (MQ=255) | CGATTAGTGAAATTCCGGCCTTCTACAAAGCCCTTGAGAGGGCCGGGAGCGTCCAGATTCAGACGGCAATACGTTTGCTTATATTAACGGCATTAAGGACCGCAGAACTGCGTTTGTGCCGTTGGGAATGGATAAACCTGGAGGACGCAACAATCACATTGCCCGCTGAAGTCATGAAGGCCCGCCGCCCGCATGTGGTCCCGCTATCACGGCAGGCGGTCGAGCTATTGCAGGACCAGTTCACACGCAGCGGATACAGTGCTTTCGTCTTTCCAGGCCGATTCATGGATAAACCCTT > CP009273/2552851‑2553148 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |